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<h3>
Aaron M. Ucko pushed to branch master
at <a href="https://salsa.debian.org/med-team/ncbi-vdb">Debian Med / ncbi-vdb</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/ncbi-vdb/-/commit/55abd1668f69409c4acb33d1a213c0eb92ecc399">55abd166</a></strong>
<div>
<span>by Aaron M. Ucko</span>
<i>at 2020-05-26T10:25:17-04:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Start ncbi-vdb 2.10.6+dfsg-5 changelog entry for more fixups.
</pre>
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<strong><a href="https://salsa.debian.org/med-team/ncbi-vdb/-/commit/aa5461fd53fcf4658b5ac5217f8a555954340eae">aa5461fd</a></strong>
<div>
<span>by Aaron M. Ucko</span>
<i>at 2020-05-26T10:27:48-04:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Avoid gratuitous rebuild altogether by overriding dh_prep.
Comment out fix_parallel_build.patch (evidently insufficient) in favor
of overriding dh_prep to spare(!) debian/tmp.
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/ncbi-vdb/-/commit/606c3c0166cae6e3c2cca2ed7a223734caa379d5">606c3c01</a></strong>
<div>
<span>by Aaron M. Ucko</span>
<i>at 2020-05-26T10:31:31-04:00</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">optionally_reinstate_default_schema.patch: Fix for GCC 10.
Use plain extern rather than SRA_EXTERN to avoid likely multiple
definitions under GCC 10.
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/ncbi-vdb/-/commit/ff5896739e2acba4c03dd6f0985af799271872ee">ff589673</a></strong>
<div>
<span>by Aaron M. Ucko</span>
<i>at 2020-05-26T10:32:22-04:00</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Finalize ncbi-vdb 2.10.6+dfsg-5 for unstable.
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<h4>4 changed files:</h4>
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<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
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<li class="file-stats">
<a href="#590b5c56763164af84a65f2cf9a50767d47e0dcd">
debian/patches/optionally_reinstate_default_schema.patch
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<li class="file-stats">
<a href="#bc34014ab4b9a49dd7a27bdd8d352912607c3a96">
debian/patches/series
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<li class="file-stats">
<a href="#8756c63497c8dc39f7773438edf53b220c773f67">
debian/rules
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<h4>Changes:</h4>
<li id="9c96da0e9f91d7d8937b69b524702c106258f0d1">
<a href="https://salsa.debian.org/med-team/ncbi-vdb/-/compare/d83e5eb9bc4c6207ec9058f6e451f58a8855631e...ff5896739e2acba4c03dd6f0985af799271872ee#9c96da0e9f91d7d8937b69b524702c106258f0d1"><strong>debian/changelog</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">ncbi-vdb (2.10.6+dfsg-5) unstable; urgency=medium</span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext"> * Comment out fix_parallel_build.patch (evidently insufficient) in favor</span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="plaintext"> of overriding dh_prep to spare(!) debian/tmp.</span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext"> * optionally_reinstate_default_schema.patch: Use plain extern rather</span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext"> than SRA_EXTERN to avoid likely multiple definitions under GCC 10.</span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext"> </span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext"> -- Aaron M. Ucko <ucko@debian.org> Tue, 26 May 2020 10:32:22 -0400</span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="plaintext">ncbi-vdb (2.10.6+dfsg-4) unstable; urgency=medium</span>
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC12" class="line" lang="plaintext"> * debian/patches/fix_parallel_build.patch (new): Use unique temporary</span>
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<li id="590b5c56763164af84a65f2cf9a50767d47e0dcd">
<a href="https://salsa.debian.org/med-team/ncbi-vdb/-/compare/d83e5eb9bc4c6207ec9058f6e451f58a8855631e...ff5896739e2acba4c03dd6f0985af799271872ee#590b5c56763164af84a65f2cf9a50767d47e0dcd"><strong>debian/patches/optionally_reinstate_default_schema.patch</strong></a>
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<td class="diff-line-num unfold js-unfold new_line" data-linenumber="26" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -26,7 +26,7 @@</td>
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<pre style="margin: 0;"> <span id="LC26" class="line" lang="diff"> */</span>
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<pre style="margin: 0;"> <span id="LC27" class="line" lang="diff"> SRA_EXTERN rc_t CC SRAMgrMakeSRASchema ( struct SRAMgr const *self, struct VSchema **schema );</span>
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<pre style="margin: 0;"> <span id="LC28" class="line" lang="diff"> SRA_EXTERN rc_t CC VDBManagerMakeSRASchema ( struct VDBManager const *self, struct VSchema **schema );</span>
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<pre style="margin: 0;">-<span id="LC29" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+<span class="idiff left right">SRA_EXTERN</span> bool SRAUseLegacyDefaultSchema;</span></span>
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<pre style="margin: 0;">+<span id="LC29" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+<span class="idiff left right">extern</span> bool SRAUseLegacyDefaultSchema;</span></span>
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<pre style="margin: 0;"> <span id="LC30" class="line" lang="diff"> </span>
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<pre style="margin: 0;"> <span id="LC31" class="line" lang="diff"> </span>
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<pre style="margin: 0;"> <span id="LC32" class="line" lang="diff"> #ifdef __cplusplus</span></pre>
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<li id="bc34014ab4b9a49dd7a27bdd8d352912607c3a96">
<a href="https://salsa.debian.org/med-team/ncbi-vdb/-/compare/d83e5eb9bc4c6207ec9058f6e451f58a8855631e...ff5896739e2acba4c03dd6f0985af799271872ee#bc34014ab4b9a49dd7a27bdd8d352912607c3a96"><strong>debian/patches/series</strong></a>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="14" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="14" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -14,4 +14,4 @@ i386-uint64_msbit.patch</td>
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14
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14
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<pre style="margin: 0;"> <span id="LC14" class="line" lang="plaintext">fix_path_mbedtls.patch</span>
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15
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15
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<pre style="margin: 0;"> <span id="LC15" class="line" lang="plaintext">redefine_CALL_MBEDTLS.patch</span>
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16
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<pre style="margin: 0;"> <span id="LC16" class="line" lang="plaintext">optionally_reinstate_default_schema.patch</span>
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17
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<pre style="margin: 0;">-<span id="LC17" class="line" lang="plaintext">fix_parallel_build.patch</span></pre>
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="plaintext"><span class="idiff left right"># </span>fix_parallel_build.patch</span></pre>
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<li id="8756c63497c8dc39f7773438edf53b220c773f67">
<a href="https://salsa.debian.org/med-team/ncbi-vdb/-/compare/d83e5eb9bc4c6207ec9058f6e451f58a8855631e...ff5896739e2acba4c03dd6f0985af799271872ee#8756c63497c8dc39f7773438edf53b220c773f67"><strong>debian/rules</strong></a>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="65" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -65,6 +65,9 @@ else</td>
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<pre style="margin: 0;"> <span id="LC65" class="line" lang="plaintext"> echo "Skip testing which takes a long time"</span>
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<pre style="margin: 0;"> <span id="LC66" class="line" lang="plaintext">endif</span>
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<pre style="margin: 0;"> <span id="LC67" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC68" class="line" lang="plaintext">override_dh_prep:</span>
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<pre style="margin: 0;">+<span id="LC69" class="line" lang="plaintext"> dh_prep -Xdebian/tmp</span>
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<pre style="margin: 0;">+<span id="LC70" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC71" class="line" lang="plaintext">override_dh_auto_install:</span>
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<pre style="margin: 0;"> <span id="LC72" class="line" lang="plaintext"> dh_auto_install</span>
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<pre style="margin: 0;"> <span id="LC73" class="line" lang="plaintext"> find $(LIBINSTALLDIR) -name "*-static.a" -delete</span>
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