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<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/med-team/bamtools">Debian Med / bamtools</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/bamtools/-/commit/c60460a98caf741625b0dcba041b4b5c80eab254">c60460a9</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-05-27T11:10:07+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: Standards-Version: 4.5.0
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/bamtools/-/commit/fc4d0df282c1ab90357e9039f7c9eae15149f9d6">fc4d0df2</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-05-27T11:10:07+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: debhelper-compat 13
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/bamtools/-/commit/652db08ee46903b2bb800fa613c8e7e4255e8230">652db08e</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-05-27T11:10:13+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: Add salsa-ci file
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/bamtools/-/commit/eddb42431d7c26c85bf7d9d53e20e72b7b258e6e">eddb4243</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-05-27T11:10:13+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: Rules-Requires-Root: no
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/bamtools/-/commit/48ace284d7ef1b5fcd748732ea98868427560741">48ace284</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-05-27T11:10:15+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Set upstream metadata fields: Bug-Submit.
Fixes: lintian: upstream-metadata-missing-bug-tracking
See-also: https://lintian.debian.org/tags/upstream-metadata-missing-bug-tracking.html
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/bamtools/-/commit/ef1282ded582bb30d905380efa2e208f3b5c9920">ef1282de</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-05-27T11:20:47+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Use d-shlibs
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/bamtools/-/commit/3cccbac25b1e63d9d6fa506d8161c205b6efd43c">3cccbac2</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-05-27T12:14:40+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Build additional static lib
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/bamtools/-/commit/02a1aa379c7b8378e13d5dea928d2394042a4a4d">02a1aa37</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-05-27T12:17:31+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Upload to unstable
</pre>
</li>
</ul>
<h4>9 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
</a>
</li>
<li class="file-stats">
<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
</a>
</li>
<li class="file-stats">
<a href="#ea41d1dc1607334eab02f3c0775b7ef37a071e8d">
debian/libbamtools-dev.install
</a>
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<li class="file-stats">
<a href="#5123801a967c17200115c5452426253a25bd9f36">
<span class="deleted-file">
−
debian/libbamtools2.5.1.install
</span>
</a>
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<li class="file-stats">
<a href="#bc34014ab4b9a49dd7a27bdd8d352912607c3a96">
debian/patches/series
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<li class="file-stats">
<a href="#295815bc81b7664bf5f47a7f64db6af47ad53941">
<span class="new-file">
+
debian/patches/shared_and_static.patch
</span>
</a>
</li>
<li class="file-stats">
<a href="#8756c63497c8dc39f7773438edf53b220c773f67">
debian/rules
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</li>
<li class="file-stats">
<a href="#b1dbf22e88351ec0d5d1d1a7f53295504b480e61">
<span class="new-file">
+
debian/salsa-ci.yml
</span>
</a>
</li>
<li class="file-stats">
<a href="#f5606a935d95a2f20059a7ac1136f47b2edadbf6">
debian/upstream/metadata
</a>
</li>
</ul>
<h4>Changes:</h4>
<li id="9c96da0e9f91d7d8937b69b524702c106258f0d1">
<a href="https://salsa.debian.org/med-team/bamtools/-/compare/130504f9b81c0bfe865a9da2a3feb30e62052463...02a1aa379c7b8378e13d5dea928d2394042a4a4d#9c96da0e9f91d7d8937b69b524702c106258f0d1"><strong>debian/changelog</strong></a>
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="plaintext">bamtools (2.5.1+dfsg-6) <span class="idiff left right">UNRELEASED</span>; urgency=medium</span>
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<td class="diff-line-num new new_line" data-linenumber="1" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">bamtools (2.5.1+dfsg-6) <span class="idiff left right">unstable</span>; urgency=medium</span>
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="plaintext"></span>
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<td class="diff-line-num new_line" data-linenumber="3" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext"> * Add IsSupplementaryAlignment() patch from bamtools code copy shipped</span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext"> with tiddit</span>
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<pre style="margin: 0;">-<span id="LC5" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">-<span id="LC6" class="line" lang="plaintext"> -- Andreas Tille <tille@debian.org> Wed, 27 May 2020 09:59:29 +0200</span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext"> * Standards-Version: 4.5.0 (routine-update)</span>
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<td class="diff-line-num new new_line" data-linenumber="6" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext"> * debhelper-compat 13 (routine-update)</span>
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<td class="diff-line-num new old_line" data-linenumber="7" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="7" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext"> * Add salsa-ci file (routine-update)</span>
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<td class="diff-line-num new new_line" data-linenumber="8" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext"> * Rules-Requires-Root: no (routine-update)</span>
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<td class="diff-line-num new new_line" data-linenumber="9" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="plaintext"> * Set upstream metadata fields: Bug-Submit.</span>
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<td class="diff-line-num new new_line" data-linenumber="10" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="plaintext"> * Use d-shlibs</span>
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<td class="diff-line-num new new_line" data-linenumber="11" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="plaintext"> * Build additional static lib</span>
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<td class="diff-line-num new new_line" data-linenumber="12" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="plaintext"></span>
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<td class="diff-line-num new new_line" data-linenumber="13" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="plaintext"> -- Andreas Tille <tille@debian.org> Wed, 27 May 2020 12:14:50 +0200</span>
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<pre style="margin: 0;"> <span id="LC14" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC15" class="line" lang="plaintext">bamtools (2.5.1+dfsg-5) unstable; urgency=medium</span>
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<pre style="margin: 0;"> <span id="LC16" class="line" lang="plaintext"></span>
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<a href="https://salsa.debian.org/med-team/bamtools/-/compare/130504f9b81c0bfe865a9da2a3feb30e62052463...02a1aa379c7b8378e13d5dea928d2394042a4a4d#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2"><strong>debian/control</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -6,17 +6,18 @@ Uploaders: Michael R. Crusoe <michael.crusoe@gmail.com>,</td>
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="plaintext"> Dominique Belhachemi <domibel@debian.org></span>
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="plaintext">Section: science</span>
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<pre style="margin: 0;"> <span id="LC8" class="line" lang="plaintext">Priority: optional</span>
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<pre style="margin: 0;">-<span id="LC9" class="line" lang="plaintext">Build-Depends: debhelper-compat (= 1<span class="idiff left right">2</span>),</span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="plaintext">Build-Depends: debhelper-compat (= 1<span class="idiff left right">3</span>),</span>
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="plaintext"> d-shlibs,</span>
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="plaintext"> cmake,</span>
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<pre style="margin: 0;"> <span id="LC12" class="line" lang="plaintext"> zlib1g-dev,</span>
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<pre style="margin: 0;"> <span id="LC13" class="line" lang="plaintext"> libjsoncpp-dev,</span>
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<pre style="margin: 0;"> <span id="LC14" class="line" lang="plaintext"> help2man,</span>
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<pre style="margin: 0;"> <span id="LC15" class="line" lang="plaintext"> doxygen</span>
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<pre style="margin: 0;">-<span id="LC16" class="line" lang="plaintext">Standards-Version: 4.<span class="idiff left right">4.1</span></span>
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="plaintext">Standards-Version: 4.<span class="idiff left right">5.0</span></span>
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<pre style="margin: 0;"> <span id="LC17" class="line" lang="plaintext">Vcs-Browser: https://salsa.debian.org/med-team/bamtools</span>
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<td class="diff-line-num old_line" data-linenumber="18" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC18" class="line" lang="plaintext">Vcs-Git: https://salsa.debian.org/med-team/bamtools.git</span>
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<td class="diff-line-num old_line" data-linenumber="19" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC19" class="line" lang="plaintext">Homepage: https://github.com/pezmaster31/bamtools/wiki</span>
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<pre style="margin: 0;">+<span id="LC20" class="line" lang="plaintext">Rules-Requires-Root: no</span>
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<pre style="margin: 0;"> <span id="LC21" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC22" class="line" lang="plaintext">Package: bamtools</span>
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<pre style="margin: 0;"> <span id="LC23" class="line" lang="plaintext">Architecture: any</span>
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<li id="ea41d1dc1607334eab02f3c0775b7ef37a071e8d">
<a href="https://salsa.debian.org/med-team/bamtools/-/compare/130504f9b81c0bfe865a9da2a3feb30e62052463...02a1aa379c7b8378e13d5dea928d2394042a4a4d#ea41d1dc1607334eab02f3c0775b7ef37a071e8d"><strong>debian/libbamtools-dev.install</strong></a>
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1
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="php"><span class="nx">debian</span><span class="o" style="font-weight: 600;">/</span><span class="nx">tmp</span><span class="o" style="font-weight: 600;">/</span><span class="nx">usr</span><span class="o" style="font-weight: 600;">/</span><span class="nx">lib</span><span class="o" style="font-weight: 600;">/*/*</span><span class="nx">so</span></span>
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2
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<pre style="margin: 0;"> <span id="LC1" class="line" lang="php"><span class="nx">debian</span><span class="o" style="font-weight: 600;">/</span><span class="nx">cmake</span> <span class="nx">usr</span><span class="o" style="font-weight: 600;">/</span><span class="nx">share</span></span></pre>
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3
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<pre style="margin: 0;">-<span id="LC3" class="line" lang="php"><span class="nx">debian</span><span class="o" style="font-weight: 600;">/</span><span class="nx">tmp</span><span class="o" style="font-weight: 600;">/</span><span class="nx">usr</span><span class="o" style="font-weight: 600;">/</span><span class="k" style="font-weight: 600;">include</span><span class="o" style="font-weight: 600;">/*</span> <span class="nx">usr</span><span class="o" style="font-weight: 600;">/</span><span class="k" style="font-weight: 600;">include</span><span class="o" style="font-weight: 600;">/</span></span></pre>
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<a href="https://salsa.debian.org/med-team/bamtools/-/compare/130504f9b81c0bfe865a9da2a3feb30e62052463...02a1aa379c7b8378e13d5dea928d2394042a4a4d#5123801a967c17200115c5452426253a25bd9f36"><strong>debian/libbamtools2.5.1.install</strong>
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="php"><span class="nx">debian</span><span class="o" style="font-weight: 600;">/</span><span class="nx">tmp</span><span class="o" style="font-weight: 600;">/</span><span class="nx">usr</span><span class="o" style="font-weight: 600;">/</span><span class="nx">lib</span><span class="o" style="font-weight: 600;">/*/</span><span class="nx">libbamtools</span><span class="o" style="font-weight: 600;">.</span><span class="nx">so</span><span class="o" style="font-weight: 600;">.</span><span class="mi" style="color: #099;">2</span><span class="o" style="font-weight: 600;">*</span></span></pre>
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<a href="https://salsa.debian.org/med-team/bamtools/-/compare/130504f9b81c0bfe865a9da2a3feb30e62052463...02a1aa379c7b8378e13d5dea928d2394042a4a4d#bc34014ab4b9a49dd7a27bdd8d352912607c3a96"><strong>debian/patches/series</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -5,3 +5,4 @@ doxygen-tweak</td>
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="plaintext">0008_Cmake_Test.patch</span>
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="plaintext">spelling</span>
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="plaintext">tiddit.patch</span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext">shared_and_static.patch</span></pre>
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<a href="https://salsa.debian.org/med-team/bamtools/-/compare/130504f9b81c0bfe865a9da2a3feb30e62052463...02a1aa379c7b8378e13d5dea928d2394042a4a4d#295815bc81b7664bf5f47a7f64db6af47ad53941"><strong>debian/patches/shared_and_static.patch</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="diff"><span class="p">Description: Build additional static lib</span></span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="diff"><span class="p">Author: Andreas Tille <tille@debian.org></span></span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="diff"><span class="p">Last-Update: Wed, 27 May 2020 09:59:29 +0200</span></span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="diff"></span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="diff">--- a/src/api/CMakeLists.txt</span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/src/api/CMakeLists.txt</span></span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="diff"><span class="p">@@ -38,18 +38,24 @@</span> if( WIN32 )</span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="diff"> endif()</span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="diff"> </span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="diff"> # create main BamTools API library</span>
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-add_library( BamTools ${BamToolsAPISources} )</span></span>
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+add_library( BamTools SHARED ${BamToolsAPISources} )</span></span>
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+add_library( BamTools_static STATIC ${BamToolsAPISources} )</span></span>
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="diff"> # The SONAME is bumped on every version increment</span>
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="diff"> # as Bamtools does not yet guarantee a stable ABI</span>
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="diff"> set_target_properties( BamTools PROPERTIES</span>
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="diff"> SOVERSION "${BamTools_VERSION}"</span>
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18
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<pre style="margin: 0;">+<span id="LC18" class="line" lang="diff"> OUTPUT_NAME "bamtools" )</span>
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19
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+set_target_properties( BamTools_static PROPERTIES</span></span>
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20
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<pre style="margin: 0;">+<span id="LC20" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ OUTPUT_NAME "bamtools" )</span></span>
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21
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<pre style="margin: 0;">+<span id="LC21" class="line" lang="diff"> target_include_directories( BamTools PRIVATE "${ZLIB_INCLUDE_DIRS}" )</span>
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22
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<pre style="margin: 0;">+<span id="LC22" class="line" lang="diff"> target_link_libraries( BamTools PRIVATE "${ZLIB_LIBRARIES}" "${WIN32_LIBRARIES}" )</span>
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23
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<pre style="margin: 0;">+<span id="LC23" class="line" lang="diff"> install( TARGETS BamTools</span>
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24
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<pre style="margin: 0;">+<span id="LC24" class="line" lang="diff"> ARCHIVE DESTINATION "${CMAKE_INSTALL_LIBDIR}"</span>
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25
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<pre style="margin: 0;">+<span id="LC25" class="line" lang="diff"> LIBRARY DESTINATION "${CMAKE_INSTALL_LIBDIR}"</span>
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26
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<pre style="margin: 0;">+<span id="LC26" class="line" lang="diff"> RUNTIME DESTINATION "${CMAKE_INSTALL_BINDIR}" )</span>
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27
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<pre style="margin: 0;">+<span id="LC27" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+install( TARGETS BamTools_static</span></span>
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28
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<pre style="margin: 0;">+<span id="LC28" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ ARCHIVE DESTINATION "${CMAKE_INSTALL_LIBDIR}"</span></span>
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29
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<pre style="margin: 0;">+<span id="LC29" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ LIBRARY DESTINATION "${CMAKE_INSTALL_LIBDIR}" )</span></span>
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30
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<pre style="margin: 0;">+<span id="LC30" class="line" lang="diff"> </span>
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<pre style="margin: 0;">+<span id="LC31" class="line" lang="diff"> install( FILES api_global.h DESTINATION "include/bamtools/api" COMPONENT Development )</span>
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<pre style="margin: 0;">+<span id="LC32" class="line" lang="diff"> install( FILES BamAlgorithms.h DESTINATION "include/bamtools/api" COMPONENT Development )</span></pre>
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<li id="8756c63497c8dc39f7773438edf53b220c773f67">
<a href="https://salsa.debian.org/med-team/bamtools/-/compare/130504f9b81c0bfe865a9da2a3feb30e62052463...02a1aa379c7b8378e13d5dea928d2394042a4a4d#8756c63497c8dc39f7773438edf53b220c773f67"><strong>debian/rules</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -9,11 +9,6 @@ export DEB_BUILD_MAINT_OPTIONS=hardening=+bindnow</td>
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9
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="make"><span class="nl">%</span><span class="o" style="font-weight: 600;">:</span></span>
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10
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="make"> dh <span class="nv" style="color: #008080;">$@</span></span>
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11
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11
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="make"></span>
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12
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<pre style="margin: 0;">-<span id="LC12" class="line" lang="make"><span class="nl">override_dh_auto_configure-arch</span><span class="o" style="font-weight: 600;">:</span></span>
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13
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<pre style="margin: 0;">-<span id="LC13" class="line" lang="make"> dh_auto_configure <span class="nt" style="color: #000080;">--arch</span> <span class="nt" style="color: #000080;">--</span> <span class="nt" style="color: #000080;">-DBUILD_SHARED_LIBS</span><span class="o" style="font-weight: 600;">=</span>on</span>
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14
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<pre style="margin: 0;">-<span id="LC14" class="line" lang="make"></span>
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15
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<pre style="margin: 0;">-<span id="LC15" class="line" lang="make"><span class="nl">override_dh_auto_configure-indep</span><span class="o" style="font-weight: 600;">:</span></span>
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<pre style="margin: 0;">-<span id="LC16" class="line" lang="make"></span>
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<pre style="margin: 0;"> <span id="LC12" class="line" lang="make"><span class="nl">override_dh_auto_test-indep</span><span class="o" style="font-weight: 600;">:</span></span>
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<pre style="margin: 0;"> <span id="LC13" class="line" lang="make"></span>
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<pre style="margin: 0;"> <span id="LC14" class="line" lang="make"><span class="nl">override_dh_auto_test-arch</span><span class="o" style="font-weight: 600;">:</span></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -27,6 +22,16 @@ override_dh_auto_build-indep:</td>
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<pre style="margin: 0;"> <span id="LC22" class="line" lang="make"> doxygen docs/Doxyfile</span>
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<pre style="margin: 0;"> <span id="LC23" class="line" lang="make"> <span class="nb" style="color: #0086b3;">mv </span>docs/Doxyfile.bak docs/Doxyfile</span>
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<pre style="margin: 0;"> <span id="LC24" class="line" lang="make"></span>
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<pre style="margin: 0;">+<span id="LC25" class="line" lang="make"><span class="nl">override_dh_install-arch</span><span class="o" style="font-weight: 600;">:</span></span>
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<pre style="margin: 0;">+<span id="LC26" class="line" lang="make"> dh_install <span class="nt" style="color: #000080;">--arch</span></span>
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<pre style="margin: 0;">+<span id="LC27" class="line" lang="make"> d-shlibmove <span class="nt" style="color: #000080;">--commit</span> <span class="se" style="color: #d14;">\</span></span>
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<pre style="margin: 0;">+<span id="LC28" class="line" lang="make"> <span class="nt" style="color: #000080;">--multiarch</span> <span class="se" style="color: #d14;">\</span></span>
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<pre style="margin: 0;">+<span id="LC29" class="line" lang="make"> <span class="nt" style="color: #000080;">--devunversioned</span> <span class="se" style="color: #d14;">\</span></span>
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<pre style="margin: 0;">+<span id="LC30" class="line" lang="make"> <span class="nt" style="color: #000080;">--exclude-la</span> <span class="se" style="color: #d14;">\</span></span>
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<pre style="margin: 0;">+<span id="LC31" class="line" lang="make"> <span class="nt" style="color: #000080;">--movedev</span> debian/tmp/usr/include/<span class="k" style="font-weight: 600;">*</span> usr/include <span class="se" style="color: #d14;">\</span></span>
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<pre style="margin: 0;">+<span id="LC32" class="line" lang="make"> <span class="nt" style="color: #000080;">--movedev</span> <span class="s2" style="color: #d14;">"debian/tmp/usr/lib/*/pkgconfig/*.pc"</span> usr/lib/<span class="nv" style="color: #008080;">$(DEB_HOST_MULTIARCH)</span>/pkgconfig <span class="se" style="color: #d14;">\</span></span>
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<pre style="margin: 0;">+<span id="LC33" class="line" lang="make"> debian/tmp/usr/lib/<span class="k" style="font-weight: 600;">*</span>/<span class="k" style="font-weight: 600;">*</span>.so</span>
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<pre style="margin: 0;">+<span id="LC34" class="line" lang="make"></span>
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<pre style="margin: 0;"> <span id="LC35" class="line" lang="make"><span class="nl">override_dh_install-indep</span><span class="o" style="font-weight: 600;">:</span></span>
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<pre style="margin: 0;"> <span id="LC36" class="line" lang="make"> dh_install <span class="nt" style="color: #000080;">--indep</span></span>
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<pre style="margin: 0;"> <span id="LC37" class="line" lang="make"> <span class="nb" style="color: #0086b3;">rm</span> <span class="nt" style="color: #000080;">-f</span> debian/libbamtools-doc/usr/share/doc/libbamtools-dev/html/jquery.js</span>
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<a href="https://salsa.debian.org/med-team/bamtools/-/compare/130504f9b81c0bfe865a9da2a3feb30e62052463...02a1aa379c7b8378e13d5dea928d2394042a4a4d#b1dbf22e88351ec0d5d1d1a7f53295504b480e61"><strong>debian/salsa-ci.yml</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="yaml"><span class="nn" style="color: #555;">---</span></span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="yaml"><span class="na" style="color: #008080;">include</span><span class="pi">:</span></span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="yaml"> <span class="pi">-</span> <span class="s" style="color: #d14;">https://salsa.debian.org/salsa-ci-team/pipeline/raw/master/salsa-ci.yml</span></span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="yaml"> <span class="pi">-</span> <span class="s" style="color: #d14;">https://salsa.debian.org/salsa-ci-team/pipeline/raw/master/pipeline-jobs.yml</span></span></pre>
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<a href="https://salsa.debian.org/med-team/bamtools/-/compare/130504f9b81c0bfe865a9da2a3feb30e62052463...02a1aa379c7b8378e13d5dea928d2394042a4a4d#f5606a935d95a2f20059a7ac1136f47b2edadbf6"><strong>debian/upstream/metadata</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">Bug-Submit: https://github.com/pezmaster31/bamtools/issues/new</span>
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="plaintext">Reference:</span>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext">- Author: ></span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext"> Derek W. Barnett and Erik K. Garrison and Aaron R. Quinlan and</span>
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