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<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/med-team/metabat">Debian Med / metabat</a>
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<h4>
Commits:
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<ul>
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<strong><a href="https://salsa.debian.org/med-team/metabat/-/commit/4172550eec48e807cd82b35997d55f67626210de">4172550e</a></strong>
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<span>by Andreas Tille</span>
<i>at 2020-05-28T20:08:52+02:00</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Use Debian packaged libraries
</pre>
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<h4>2 changed files:</h4>
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<li class="file-stats">
<a href="#9a2aa4db38d3115ed60da621e012c0efc0172aae">
CMakeLists.txt
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<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
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<h4>Changes:</h4>
<li id="9a2aa4db38d3115ed60da621e012c0efc0172aae">
<a href="https://salsa.debian.org/med-team/metabat/-/commit/4172550eec48e807cd82b35997d55f67626210de#9a2aa4db38d3115ed60da621e012c0efc0172aae"><strong>CMakeLists.txt</strong></a>
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<td class="diff-line-num unfold js-unfold new_line" data-linenumber="8" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -8,8 +8,10 @@ endif()</td>
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<pre style="margin: 0;"> <span id="LC8" class="line" lang="cmake"><span class="nb" style="color: #0086b3;">message</span><span class="p">(</span><span class="s2" style="color: #d14;">"Installing </span><span class="si" style="color: #d14;">${</span><span class="nv" style="color: #008080;">CMAKE_BUILD_TYPE</span><span class="si" style="color: #d14;">}</span><span class="s2" style="color: #d14;"> MetaBAT into </span><span class="si" style="color: #d14;">${</span><span class="nv" style="color: #008080;">CMAKE_INSTALL_PREFIX</span><span class="si" style="color: #d14;">}</span><span class="s2" style="color: #d14;">"</span><span class="p">)</span></span>
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<td class="diff-line-num old_line" data-linenumber="9" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="cmake"></span>
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="cmake"><span class="nb" style="color: #0086b3;">include</span><span class="p">(</span><span class="si" style="color: #d14;">${</span><span class="nv" style="color: #008080;">CMAKE_ROOT</span><span class="si" style="color: #d14;">}</span>/Modules/ExternalProject.cmake<span class="p">)</span></span>
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<td class="diff-line-num old old_line" data-linenumber="11" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC11" class="line" lang="cmake"><span class="nb" style="color: #0086b3;">include</span><span class="p">(</span>cmake/zlib.cmake<span class="p">)</span></span>
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<pre style="margin: 0;">-<span id="LC12" class="line" lang="cmake"><span class="nb" style="color: #0086b3;">include</span><span class="p">(</span>cmake/htslib.cmake<span class="p">)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="11" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="cmake"><span class="nb" style="color: #0086b3;">find_package</span><span class="p">(</span>ZLIB REQUIRED<span class="p">)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="12" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="cmake"><span class="c1" style="color: #998; font-style: italic;"># Find HTSlib. We find it with pkg-config, so it has static and dynamic libs by default.</span></span>
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="cmake"><span class="nb" style="color: #0086b3;">find_package</span><span class="p">(</span>PkgConfig REQUIRED<span class="p">)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="14" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="cmake"><span class="nf" style="color: #900; font-weight: 600;">pkg_check_modules</span><span class="p">(</span>HTSlib REQUIRED htslib<span class="p">)</span></span>
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<pre style="margin: 0;"> <span id="LC15" class="line" lang="cmake"></span>
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<pre style="margin: 0;"> <span id="LC16" class="line" lang="cmake"><span class="nb" style="color: #0086b3;">set</span><span class="p">(</span>CMAKE_CXX_STANDARD 11<span class="p">)</span></span>
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<pre style="margin: 0;"> <span id="LC17" class="line" lang="cmake"><span class="nb" style="color: #0086b3;">set</span><span class="p">(</span>CMAKE_CXX_STANDARD_REQUIRED ON<span class="p">)</span></span>
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<li id="58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
<a href="https://salsa.debian.org/med-team/metabat/-/commit/4172550eec48e807cd82b35997d55f67626210de#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2"><strong>debian/control</strong></a>
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<td class="diff-line-num unfold js-unfold new_line" data-linenumber="10" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -10,6 +10,8 @@ Build-Depends: debhelper-compat (= 13),</td>
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="plaintext"> libboost-filesystem-dev,</span>
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="plaintext"> libboost-serialization-dev,</span>
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<pre style="margin: 0;"> <span id="LC12" class="line" lang="plaintext"> zlib1g-dev,</span>
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="plaintext"> libhts-dev,</span>
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="plaintext"> pkg-config,</span>
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<pre style="margin: 0;"> <span id="LC15" class="line" lang="plaintext"> python3</span>
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<pre style="margin: 0;"> <span id="LC16" class="line" lang="plaintext">Standards-Version: 4.5.0</span>
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<pre style="margin: 0;"> <span id="LC17" class="line" lang="plaintext">Vcs-Browser: https://salsa.debian.org/med-team/metabat</span>
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