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<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/med-team/bamtools">Debian Med / bamtools</a>
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<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/bamtools/-/commit/944c52f4aeefa1e938d811257524288bda10faaf">944c52f4</a></strong>
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<span>by Andreas Tille</span>
<i>at 2020-05-29T13:00:17+02:00</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Override dh_auto_install-indep
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<strong><a href="https://salsa.debian.org/med-team/bamtools/-/commit/35205d6732d0e629e944bf6a368e6fce866101c5">35205d67</a></strong>
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<span>by Andreas Tille</span>
<i>at 2020-05-29T13:03:50+02:00</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Upload to unstable
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<h4>2 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
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<li class="file-stats">
<a href="#8756c63497c8dc39f7773438edf53b220c773f67">
debian/rules
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<h4>Changes:</h4>
<li id="9c96da0e9f91d7d8937b69b524702c106258f0d1">
<a href="https://salsa.debian.org/med-team/bamtools/-/compare/02a1aa379c7b8378e13d5dea928d2394042a4a4d...35205d6732d0e629e944bf6a368e6fce866101c5#9c96da0e9f91d7d8937b69b524702c106258f0d1"><strong>debian/changelog</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">bamtools (2.5.1+dfsg-7) unstable; urgency=medium</span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext"> * Override dh_auto_install-indep</span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="plaintext"> Closes: #961777</span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext"> -- Andreas Tille <tille@debian.org> Fri, 29 May 2020 13:00:25 +0200</span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC8" class="line" lang="plaintext">bamtools (2.5.1+dfsg-6) unstable; urgency=medium</span>
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="plaintext"> * Add IsSupplementaryAlignment() patch from bamtools code copy shipped</span>
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<li id="8756c63497c8dc39f7773438edf53b220c773f67">
<a href="https://salsa.debian.org/med-team/bamtools/-/compare/02a1aa379c7b8378e13d5dea928d2394042a4a4d...35205d6732d0e629e944bf6a368e6fce866101c5#8756c63497c8dc39f7773438edf53b220c773f67"><strong>debian/rules</strong></a>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="22" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="22" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -22,6 +22,8 @@ override_dh_auto_build-indep:</td>
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<pre style="margin: 0;"> <span id="LC22" class="line" lang="make"> doxygen docs/Doxyfile</span>
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<pre style="margin: 0;"> <span id="LC23" class="line" lang="make"> <span class="nb" style="color: #0086b3;">mv </span>docs/Doxyfile.bak docs/Doxyfile</span>
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<pre style="margin: 0;"> <span id="LC24" class="line" lang="make"></span>
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<pre style="margin: 0;">+<span id="LC25" class="line" lang="make"><span class="nl">override_dh_auto_install-indep</span><span class="o" style="font-weight: 600;">:</span></span>
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<td class="diff-line-num new new_line" data-linenumber="26" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC26" class="line" lang="make"></span>
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<td class="diff-line-num new_line" data-linenumber="27" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC27" class="line" lang="make"><span class="nl">override_dh_install-arch</span><span class="o" style="font-weight: 600;">:</span></span>
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<td class="diff-line-num old_line" data-linenumber="26" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC28" class="line" lang="make"> dh_install <span class="nt" style="color: #000080;">--arch</span></span>
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<pre style="margin: 0;"> <span id="LC29" class="line" lang="make"> d-shlibmove <span class="nt" style="color: #000080;">--commit</span> <span class="se" style="color: #d14;">\</span></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="37" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="39" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -37,8 +39,5 @@ override_dh_install-indep:</td>
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<pre style="margin: 0;"> <span id="LC39" class="line" lang="make"> <span class="nb" style="color: #0086b3;">rm</span> <span class="nt" style="color: #000080;">-f</span> debian/libbamtools-doc/usr/share/doc/libbamtools-dev/html/jquery.js</span>
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<pre style="margin: 0;"> <span id="LC40" class="line" lang="make"> <span class="nb" style="color: #0086b3;">ln</span> <span class="nt" style="color: #000080;">-s</span> /usr/share/javascript/jquery/jquery.js debian/libbamtools-doc/usr/share/doc/libbamtools-dev/html/jquery.js</span>
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<pre style="margin: 0;"> <span id="LC41" class="line" lang="make"></span>
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<pre style="margin: 0;">-<span id="LC40" class="line" lang="make"><span class="c" style="color: #998; font-style: italic;">#override_dh_installman:</span></span>
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<pre style="margin: 0;">-<span id="LC41" class="line" lang="make"><span class="c" style="color: #998; font-style: italic;"># LD_LIBRARY_PATH=debian/tmp/usr/lib:${LD_LIBRARY_PATH} help2man --name "a command-line toolkit for reading, writing, and manipulating BAM (genome alignment) files" --no-info --no-discard-stderr debian/tmp/usr/bin/bamtools > debian/bamtools.1</span></span>
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<pre style="margin: 0;">-<span id="LC42" class="line" lang="make"></span>
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<pre style="margin: 0;"> <span id="LC42" class="line" lang="make"><span class="nl">describe-current-version</span><span class="o" style="font-weight: 600;">:</span></span>
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<pre style="margin: 0;"> <span id="LC43" class="line" lang="make"> git describe <span class="nt" style="color: #000080;">--tags</span> upstream | <span class="nb" style="color: #0086b3;">sed</span> <span class="s1" style="color: #d14;">'s,^release-,,;s,-,+,;s,-,~,;'</span></span></pre>
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