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<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/med-team/metabat">Debian Med / metabat</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/metabat/-/commit/17b7c562fcfbaa05a19ff9c77bebfb881473ad8b">17b7c562</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-05-29T12:17:43+02:00</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Really fix cmake config
</pre>
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<h4>1 changed file:</h4>
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<li class="file-stats">
<a href="#ee54dc79014b3def963898e50c98877d46c6b27e">
debian/patches/use_debian_packaged_libs.patch
</a>
</li>
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<h4>Changes:</h4>
<li id="ee54dc79014b3def963898e50c98877d46c6b27e">
<a href="https://salsa.debian.org/med-team/metabat/-/commit/17b7c562fcfbaa05a19ff9c77bebfb881473ad8b#ee54dc79014b3def963898e50c98877d46c6b27e"><strong>debian/patches/use_debian_packaged_libs.patch</strong></a>
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<td class="diff-line-num unfold js-unfold new_line" data-linenumber="49" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -49,24 +49,22 @@ Last-Update: Thu, 28 May 2020 17:21:42 +0200</td>
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<pre style="margin: 0;"> <span id="LC49" class="line" lang="diff"> # find and use OpenMP</span>
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<pre style="margin: 0;"> <span id="LC50" class="line" lang="diff"> find_package(OpenMP)</span>
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<pre style="margin: 0;"> <span id="LC51" class="line" lang="diff"> </span>
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<pre style="margin: 0;">-<span id="LC52" class="line" lang="diff"><span class="p">@@ -36,8 +38,<span class="idiff left right">8</span> @@</span> set(targets metabat1 metabat2)</span>
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<pre style="margin: 0;">+<span id="LC52" class="line" lang="diff"><span class="p">@@ -36,8 +38,<span class="idiff left right">7</span> @@</span> set(targets metabat1 metabat2)</span>
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<pre style="margin: 0;"> <span id="LC53" class="line" lang="diff"> foreach(target ${targets})</span>
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<pre style="margin: 0;"> <span id="LC54" class="line" lang="diff"> </span>
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<pre style="margin: 0;"> <span id="LC55" class="line" lang="diff"> add_executable(${target} ${target}.cpp)</span>
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<td class="diff-line-num old_line" data-linenumber="56" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC56" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- add_dependencies(${target} htslib zlib check_git_repository)</span></span>
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<td class="diff-line-num old_line" data-linenumber="57" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC57" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- target_link_libraries(${target} ${zlib_LIB} ${Boost_LIBRARIES} ${EXTRALIBS} ) </span></span>
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<pre style="margin: 0;">-<span id="LC58" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ add_dependencies(${target} htslib zlib)</span></span>
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<pre style="margin: 0;"> <span id="LC58" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ target_link_libraries(${target} ${HTSlib_LIBRARIES} ZLIB::ZLIB ${Boost_LIBRARIES} ${EXTRALIBS} )</span></span>
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<pre style="margin: 0;"> <span id="LC59" class="line" lang="diff"> </span>
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<pre style="margin: 0;"> <span id="LC60" class="line" lang="diff"> endforeach()</span>
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<pre style="margin: 0;"> <span id="LC61" class="line" lang="diff"> </span>
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<pre style="margin: 0;">-<span id="LC63" class="line" lang="diff"><span class="p">@@ -48,8 +<span class="idiff left right">50,8</span> @@</span> install(TARGETS ${targets}</span>
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<pre style="margin: 0;">+<span id="LC62" class="line" lang="diff"><span class="p">@@ -48,8 +<span class="idiff left right">49,7</span> @@</span> install(TARGETS ${targets}</span>
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<pre style="margin: 0;"> <span id="LC63" class="line" lang="diff"> set(targets jgi_summarize_bam_contig_depths contigOverlaps)</span>
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<pre style="margin: 0;"> <span id="LC64" class="line" lang="diff"> foreach(target ${targets})</span>
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<pre style="margin: 0;"> <span id="LC65" class="line" lang="diff"> add_executable(${target} ${target}.cpp)</span>
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<pre style="margin: 0;"> <span id="LC66" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- add_dependencies(${target} htslib zlib check_git_repository)</span></span>
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<pre style="margin: 0;"> <span id="LC67" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- target_link_libraries(${target} ${htslib_LIB} ${zlib_LIB} ${Boost_LIBRARIES} ) </span></span>
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<pre style="margin: 0;">-<span id="LC69" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ add_dependencies(${target} htslib zlib)</span></span>
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<pre style="margin: 0;"> <span id="LC68" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ target_link_libraries(${target} ${HTSlib_LIBRARIES} ZLIB::ZLIB ${Boost_LIBRARIES} )</span></span>
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<pre style="margin: 0;"> <span id="LC69" class="line" lang="diff"> endforeach()</span>
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<pre style="margin: 0;"> <span id="LC70" class="line" lang="diff"> </span>
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