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<h3>
Olivier Sallou pushed to branch master
at <a href="https://salsa.debian.org/med-team/picard-tools">Debian Med / picard-tools</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/picard-tools/-/commit/531b908b01dce73318e14e85c6cf817c0b7040c1">531b908b</a></strong>
<div>
<span>by Olivier Sallou</span>
<i>at 2020-05-29T07:13:20+00:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">remove libguava-java-doc dependency #961700
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/picard-tools/-/commit/bf240e7abe1197ad4a069c17694fbff6093df044">bf240e7a</a></strong>
<div>
<span>by Olivier Sallou</span>
<i>at 2020-05-29T07:29:39+00:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">remove test needing network for hostname resolution for debian CI/reproducibility
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/picard-tools/-/commit/0d53af3870401aae9e066d7056833c95c65975e1">0d53af38</a></strong>
<div>
<span>by Olivier Sallou</span>
<i>at 2020-05-29T07:31:15+00:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">remove dep libguava-java-doc
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/picard-tools/-/commit/f61f858d4d6475b701ac5d2720dae5f32246840c">f61f858d</a></strong>
<div>
<span>by Olivier Sallou</span>
<i>at 2020-05-29T08:23:50+00:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 2.22.8+dfsg</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/picard-tools/-/commit/b054253509cb34ea0428deae2bda475bcab87519">b0542535</a></strong>
<div>
<span>by Olivier Sallou</span>
<i>at 2020-05-29T08:24:32+00:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Update upstream source from tag 'upstream/2.22.8+dfsg'
Update to upstream version '2.22.8+dfsg'
with Debian dir f38ce27cc3c7fd2792176ac656bfde4a758e3afe</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/picard-tools/-/commit/528b54402a852ebb67f4670813403e1de80840f2">528b5440</a></strong>
<div>
<span>by Olivier Sallou</span>
<i>at 2020-05-29T08:28:05+00:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">nw upstream release 2.22.8
</pre>
</li>
</ul>
<h4>30 changed files:</h4>
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<li class="file-stats">
<a href="#1d2890ccc6f31c6d4f30a94a677ef21cf214f0f4">
<span class="deleted-file">
−
.pullapprove.yml
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<li class="file-stats">
<a href="#dea01dd89a3b602828e630677fde5d77c06441c8">
.travis.yml
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</li>
<li class="file-stats">
<a href="#6651ddff6eb82c840ced7c1dddee15c6e1913dd4">
Dockerfile
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<li class="file-stats">
<a href="#8ec9a00bfd09b3190ac6b22251dbb1aa95a0579d">
README.md
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<li class="file-stats">
<a href="#f07866736216be0ee2aba49e392191aeae700a35">
build.gradle
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<li class="file-stats">
<a href="#6909ff640be7be2de90d276c91938e5bcd21a003">
build_push_docker.sh
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<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
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<li class="file-stats">
<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
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<li class="file-stats">
<a href="#267b223587f808a65b35e2693e029c59fb4476cf">
<span class="new-file">
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debian/patches/60-tests-exclude-network.patch
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<li class="file-stats">
<a href="#bc34014ab4b9a49dd7a27bdd8d352912607c3a96">
debian/patches/series
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<li class="file-stats">
<a href="#942563da7cb523c2bb5a9f9775c308dc494be020">
<span class="new-file">
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docs/fingerprinting/main.pdf
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<li class="file-stats">
<a href="#83bb341687f69cd2d1a1f1a92ae95637abfec563">
<span class="new-file">
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docs/fingerprinting/main.tex
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<li class="file-stats">
<a href="#fbe448ebfc3eb2d4e308f6b8b043666f5b57235e">
gradle/wrapper/gradle-wrapper.properties
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<a href="#5bbfa66edb4db3c7c33c5181f43510990d3307f9">
gradlew
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<li class="file-stats">
<a href="#05efc8b1657769a27696d478ded1e95f38737233">
settings.gradle
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<li class="file-stats">
<a href="#025d792d6ca480e8aa317c5d5200191baa96e8b1">
src/main/java/picard/analysis/AbstractWgsMetricsCollector.java
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<li class="file-stats">
<a href="#10284f98e3a45a167c5b04c8a3146b4155a62932">
src/main/java/picard/analysis/AdapterUtility.java
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<li class="file-stats">
<a href="#bac4c9ac8d5063b8b48c84e1a30915ee1d4b4523">
src/main/java/picard/analysis/AlignmentSummaryMetrics.java
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<li class="file-stats">
<a href="#39ad2a42470243aa1402488d16e8309995fc1180">
src/main/java/picard/analysis/AlignmentSummaryMetricsCollector.java
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<li class="file-stats">
<a href="#3a02115cc24686ccecd94ec7f340c5890a553d38">
src/main/java/picard/analysis/CollectAlignmentSummaryMetrics.java
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<li class="file-stats">
<a href="#8d7507e76526876f60daef574438762bd6f57ab0">
src/main/java/picard/analysis/CollectBaseDistributionByCycle.java
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</li>
<li class="file-stats">
<a href="#39018791387cf476a9ea4511dd7a82d4982e3c05">
src/main/java/picard/analysis/CollectGcBiasMetrics.java
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<li class="file-stats">
<a href="#a8427986ca1c000c6402307f4ef77043d503630e">
src/main/java/picard/analysis/CollectInsertSizeMetrics.java
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<li class="file-stats">
<a href="#5a50cf7890c2934c93d21101ade49bf5551587ea">
src/main/java/picard/analysis/CollectJumpingLibraryMetrics.java
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<li class="file-stats">
<a href="#2269f0b41b877093e5ef84c96198be511137ddbc">
src/main/java/picard/analysis/CollectMultipleMetrics.java
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<li class="file-stats">
<a href="#bd1790f1783da7252384ebb46fb793aebd94697f">
src/main/java/picard/analysis/CollectRawWgsMetrics.java
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</li>
<li class="file-stats">
<a href="#ef73529293175de94b68d4817a681e5643b34dd8">
src/main/java/picard/analysis/CollectRnaSeqMetrics.java
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</li>
<li class="file-stats">
<a href="#13f54df4e2b29414eecb5c0cbc1da4d3e02dc14e">
src/main/java/picard/analysis/CollectRrbsMetrics.java
</a>
</li>
<li class="file-stats">
<a href="#ef17ffbbef833877458003eb2f12fc07610dfc1e">
src/main/java/picard/analysis/CollectWgsMetrics.java
</a>
</li>
<li class="file-stats">
<a href="#9a97429e0fb33ada2f86ffefa4c68b6a1554dab7">
src/main/java/picard/analysis/CollectWgsMetricsWithNonZeroCoverage.java
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</li>
</ul>
<h5>The diff was not included because it is too large.</h5>
</div>
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