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<h3>
Dylan Aïssi pushed to branch upstream
at <a href="https://salsa.debian.org/med-team/plink2">Debian Med / plink2</a>
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<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/plink2/-/commit/b5c5ffd9aa7fc65c0c8761c1630f4c5223910016">b5c5ffd9</a></strong>
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<span>by Dylan Aïssi</span>
<i>at 2020-05-29T11:49:00+02:00</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 2.00~a3-200511+dfsg</pre>
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<h4>6 changed files:</h4>
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<li class="file-stats">
<a href="#836efb6e25a091dcb4ff8e1dbb2f0be6a5cbf14c">
Makefile
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<li class="file-stats">
<a href="#f00a96fdb9f82e44f644dd8d17721446f31a8c50">
build_dynamic/Makefile
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<li class="file-stats">
<a href="#e828d66bb2fc597bda91bc643d9d9d5df9c3de2f">
plink2.cc
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<li class="file-stats">
<a href="#82c8c0946825d16815c68e845955a90079d70b6b">
plink2_glm.cc
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<li class="file-stats">
<a href="#4f7d6e6ad86d6d2bcf897c56a687683436e96b49">
plink2_matrix.cc
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<li class="file-stats">
<a href="#f5d85292088358ebd24c2a15cd3a9b7759ba61c9">
plink2_matrix.h
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<h4>Changes:</h4>
<li id="836efb6e25a091dcb4ff8e1dbb2f0be6a5cbf14c">
<a href="https://salsa.debian.org/med-team/plink2/-/commit/b5c5ffd9aa7fc65c0c8761c1630f4c5223910016#836efb6e25a091dcb4ff8e1dbb2f0be6a5cbf14c"><strong>Makefile</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -36,9 +36,12 @@ DESTDIR ?= .</td>
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<pre style="margin: 0;"> <span id="LC36" class="line" lang="make"></span>
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<td class="diff-line-num old_line" data-linenumber="37" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC37" class="line" lang="make"><span class="nv" style="color: #008080;">UNAME</span> <span class="o" style="font-weight: 600;">:=</span> <span class="nf" style="color: #900; font-weight: 600;">$(</span><span class="nb" style="color: #0086b3;">shell</span> <span class="nb" style="color: #0086b3;">uname</span><span class="nf" style="color: #900; font-weight: 600;">)</span></span>
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<pre style="margin: 0;"> <span id="LC38" class="line" lang="make"><span class="k" style="font-weight: 600;">ifeq</span> <span class="nv" style="color: #008080;">($(UNAME), Darwin)</span></span>
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<pre style="margin: 0;">+<span id="LC39" class="line" lang="make"> <span class="c" style="color: #998; font-style: italic;"># argh</span></span>
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<pre style="margin: 0;">+<span id="LC40" class="line" lang="make"> <span class="nv" style="color: #008080;">CFLAGS</span> <span class="o" style="font-weight: 600;">+=</span> <span class="nt" style="color: #000080;">-I</span>/usr/local/include</span>
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<pre style="margin: 0;">+<span id="LC41" class="line" lang="make"> <span class="nv" style="color: #008080;">CXXFLAGS</span> <span class="o" style="font-weight: 600;">+=</span> <span class="nt" style="color: #000080;">-I</span>/usr/local/include</span>
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<pre style="margin: 0;"> <span id="LC42" class="line" lang="make"> <span class="nv" style="color: #008080;">BLASFLAGS</span><span class="o" style="font-weight: 600;">=</span><span class="nt" style="color: #000080;">-framework</span> Accelerate</span>
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<pre style="margin: 0;"> <span id="LC43" class="line" lang="make"> <span class="nv" style="color: #008080;">BLASFLAGS64</span><span class="o" style="font-weight: 600;">=</span><span class="nt" style="color: #000080;">-framework</span> Accelerate</span>
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<pre style="margin: 0;">-<span id="LC41" class="line" lang="make"> <span class="nv" style="color: #008080;">LDFLAGS</span><span class="o" style="font-weight: 600;">=</span><span class="nt" style="color: #000080;">-ldl</span> <span class="nt" style="color: #000080;">-lpthread</span> <span class="nt" style="color: #000080;">-lz</span> <span class="nt" style="color: #000080;">-lzstd</span></span>
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<pre style="margin: 0;">+<span id="LC44" class="line" lang="make"> <span class="nv" style="color: #008080;">LDFLAGS</span><span class="o" style="font-weight: 600;">=</span><span class="nt" style="color: #000080;">-ldl</span> <span class="nt" style="color: #000080;">-lpthread</span> <span class="nt" style="color: #000080;">-lz</span> <span class="nt" style="color: #000080;">-lzstd</span><span class="idiff left"> </span><span class="nt" style="color: #000080;"><span class="idiff">-L</span></span><span class="idiff right">/usr/local/lib</span></span>
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<pre style="margin: 0;"> <span id="LC45" class="line" lang="make"><span class="k" style="font-weight: 600;">endif</span></span>
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<pre style="margin: 0;"> <span id="LC46" class="line" lang="make"></span>
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<pre style="margin: 0;"> <span id="LC47" class="line" lang="make"><span class="nl">%.o</span><span class="o" style="font-weight: 600;">:</span> <span class="nf" style="color: #900; font-weight: 600;">%.c</span></span>
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<li id="f00a96fdb9f82e44f644dd8d17721446f31a8c50">
<a href="https://salsa.debian.org/med-team/plink2/-/commit/b5c5ffd9aa7fc65c0c8761c1630f4c5223910016#f00a96fdb9f82e44f644dd8d17721446f31a8c50"><strong>build_dynamic/Makefile</strong></a>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="113" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="113" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -113,7 +113,9 @@ ifeq ($(UNAME), Darwin)</td>
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<pre style="margin: 0;"> <span id="LC113" class="line" lang="make"> <span class="err" style="color: #a61717; background-color: #e3d2d2;">$(error</span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">MKL</span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">is</span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">not</span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">currently</span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">supported</span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">on</span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">OS</span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">X)</span></span>
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<pre style="margin: 0;"> <span id="LC114" class="line" lang="make"> <span class="k" style="font-weight: 600;">endif</span></span>
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<pre style="margin: 0;"> <span id="LC115" class="line" lang="make"> <span class="nv" style="color: #008080;">BLASFLAGS</span><span class="o" style="font-weight: 600;">=</span><span class="nt" style="color: #000080;">-framework</span> Accelerate</span>
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<pre style="margin: 0;">-<span id="LC116" class="line" lang="make"> <span class="nv" style="color: #008080;">CXXFLAGS</span> <span class="o" style="font-weight: 600;">+=</span> <span class="nt" style="color: #000080;">-stdlib</span><span class="o" style="font-weight: 600;">=</span>libc++</span>
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<pre style="margin: 0;">+<span id="LC116" class="line" lang="make"> <span class="nv" style="color: #008080;">CFLAGS</span> <span class="o" style="font-weight: 600;">+=</span> <span class="nt" style="color: #000080;">-I</span>/usr/local/include</span>
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<pre style="margin: 0;">+<span id="LC117" class="line" lang="make"> <span class="nv" style="color: #008080;">CXXFLAGS</span> <span class="o" style="font-weight: 600;">+=</span> <span class="nt" style="color: #000080;">-I</span>/usr/local/include <span class="nt" style="color: #000080;">-stdlib</span><span class="o" style="font-weight: 600;">=</span>libc++</span>
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<pre style="margin: 0;">+<span id="LC118" class="line" lang="make"> <span class="nv" style="color: #008080;">LINKFLAGS</span> <span class="o" style="font-weight: 600;">+=</span> <span class="nt" style="color: #000080;">-L</span>/usr/local/lib</span>
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<pre style="margin: 0;"> <span id="LC119" class="line" lang="make"><span class="k" style="font-weight: 600;">else</span></span>
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120
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<pre style="margin: 0;"> <span id="LC120" class="line" lang="make"> <span class="k" style="font-weight: 600;">ifdef</span> <span class="nv" style="color: #008080;">DYNAMIC_MKL</span></span>
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121
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<pre style="margin: 0;"> <span id="LC121" class="line" lang="make"> <span class="k" style="font-weight: 600;">ifdef</span> <span class="nv" style="color: #008080;">NO_LAPACK</span></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -66,10 +66,10 @@ static const char ver_str[] = "PLINK v2.00a3"</td>
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<pre style="margin: 0;"> <span id="LC66" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#ifdef USE_MKL</span></span>
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<pre style="margin: 0;"> <span id="LC67" class="line" lang="cpp"> <span class="s" style="color: #d14;">" Intel"</span></span>
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<pre style="margin: 0;"> <span id="LC68" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#endif</span></span>
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<pre style="margin: 0;">-<span id="LC69" class="line" lang="cpp"> <span class="s" style="color: #d14;">" (<span class="idiff left right">9 Apr</span> 2020)"</span><span class="p">;</span></span>
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<pre style="margin: 0;">+<span id="LC69" class="line" lang="cpp"> <span class="s" style="color: #d14;">" (<span class="idiff left right">11 May</span> 2020)"</span><span class="p">;</span></span>
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<pre style="margin: 0;"> <span id="LC70" class="line" lang="cpp"><span class="k" style="font-weight: 600;">static</span> <span class="k" style="font-weight: 600;">const</span> <span class="kt" style="color: #458; font-weight: 600;">char</span> <span class="n" style="color: #333;">ver_str2</span><span class="p">[]</span> <span class="o" style="font-weight: 600;">=</span></span>
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<pre style="margin: 0;"> <span id="LC71" class="line" lang="cpp"> <span class="c1" style="color: #998; font-style: italic;">// include leading space if day < 10, so character length stays the same</span></span>
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<pre style="margin: 0;">-<span id="LC72" class="line" lang="cpp"> <span class="s" style="color: #d14;">"<span class="idiff left right"> </span>"</span></span>
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<pre style="margin: 0;">+<span id="LC72" class="line" lang="cpp"> <span class="s" style="color: #d14;">""</span></span>
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<pre style="margin: 0;"> <span id="LC73" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#ifndef LAPACK_ILP64</span></span>
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<pre style="margin: 0;"> <span id="LC74" class="line" lang="cpp"> <span class="s" style="color: #d14;">" "</span></span>
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<pre style="margin: 0;"> <span id="LC75" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#endif</span></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -1521,12 +1521,13 @@ PglErr GlmFillAndTestCovars(const uintptr_t* sample_include, const uintptr_t* co</td>
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<pre style="margin: 0;"> <span id="LC1521" class="line" lang="cpp"> <span class="n" style="color: #333;">bigstack_alloc_d</span><span class="p">(</span><span class="n" style="color: #333;">new_nonlocal_covar_ct</span> <span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333;">new_nonlocal_covar_ct</span><span class="p">,</span> <span class="o" style="font-weight: 600;">&</span><span class="n" style="color: #333;">dbl_2d_buf</span><span class="p">)))</span> <span class="p">{</span></span>
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<pre style="margin: 0;"> <span id="LC1522" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">return</span> <span class="n" style="color: #333;">kPglRetNomem</span><span class="p">;</span></span>
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1523
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<pre style="margin: 0;"> <span id="LC1523" class="line" lang="cpp"> <span class="p">}</span></span>
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<pre style="margin: 0;">-<span id="LC1524" class="line" lang="cpp"> <span class="kt" style="color: #458; font-weight: 600;">uint32_t</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333;">cat_obs_buf</span> <span class="o" style="font-weight: 600;">=</span> <span class="nb" style="color: #0086b3;">nullptr</span><span class="p">;</span></span>
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<pre style="margin: 0;">-<span id="LC1525" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span><span class="n" style="color: #333;">extra_cat_ct</span><span class="p">)</span> <span class="p">{</span></span>
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<pre style="margin: 0;">-<span id="LC1526" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span><span class="n" style="color: #333;">unlikely</span><span class="p">(</span></span>
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<pre style="margin: 0;">-<span id="LC1527" class="line" lang="cpp"> <span class="n" style="color: #333;">bigstack_alloc_u32</span><span class="p">(</span><span class="n" style="color: #333;">covar_max_nonnull_cat_ct</span> <span class="o" style="font-weight: 600;">+</span> <span class="mi" style="color: #099;">1</span><span class="p">,</span> <span class="o" style="font-weight: 600;">&</span><span class="n" style="color: #333;">cat_obs_buf</span><span class="p">)))</span> <span class="p">{</span></span>
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1528
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<pre style="margin: 0;">-<span id="LC1528" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">return</span> <span class="n" style="color: #333;">kPglRetNomem</span><span class="p">;</span></span>
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<pre style="margin: 0;">-<span id="LC1529" class="line" lang="cpp"> <span class="p">}</span></span>
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<pre style="margin: 0;">+<span id="LC1524" class="line" lang="cpp"> <span class="kt" style="color: #458; font-weight: 600;">uint32_t</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333;">cat_obs_buf</span><span class="p">;</span></span>
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<pre style="margin: 0;">+<span id="LC1525" class="line" lang="cpp"> <span class="c1" style="color: #998; font-style: italic;">// bugfix (11 May 2020): we were previously only initializing cat_obs_buf</span></span>
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<pre style="margin: 0;">+<span id="LC1526" class="line" lang="cpp"> <span class="c1" style="color: #998; font-style: italic;">// when extra_cat_ct > 0; this resulted in segfaults when every categorical</span></span>
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<pre style="margin: 0;">+<span id="LC1527" class="line" lang="cpp"> <span class="c1" style="color: #998; font-style: italic;">// covariate had only two categories.</span></span>
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<pre style="margin: 0;">+<span id="LC1528" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span><span class="n" style="color: #333;">unlikely</span><span class="p">(</span></span>
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<pre style="margin: 0;">+<span id="LC1529" class="line" lang="cpp"> <span class="n" style="color: #333;">bigstack_alloc_u32</span><span class="p">(</span><span class="n" style="color: #333;">covar_max_nonnull_cat_ct</span> <span class="o" style="font-weight: 600;">+</span> <span class="mi" style="color: #099;">1</span><span class="p">,</span> <span class="o" style="font-weight: 600;">&</span><span class="n" style="color: #333;">cat_obs_buf</span><span class="p">)))</span> <span class="p">{</span></span>
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<pre style="margin: 0;">+<span id="LC1530" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">return</span> <span class="n" style="color: #333;">kPglRetNomem</span><span class="p">;</span></span>
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<pre style="margin: 0;"> <span id="LC1531" class="line" lang="cpp"> <span class="p">}</span></span>
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1532
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<pre style="margin: 0;"> <span id="LC1532" class="line" lang="cpp"> <span class="kt" style="color: #458; font-weight: 600;">unsigned</span> <span class="kt" style="color: #458; font-weight: 600;">char</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333;">alloc_base</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">g_bigstack_base</span><span class="p">;</span></span>
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1533
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<pre style="margin: 0;"> <span id="LC1533" class="line" lang="cpp"> <span class="kt" style="color: #458; font-weight: 600;">unsigned</span> <span class="kt" style="color: #458; font-weight: 600;">char</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333;">new_covar_name_alloc</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">g_bigstack_end</span><span class="p">;</span></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -869,6 +869,8 @@ void ColMajorFvectorMatrixMultiplyStrided(const float* in_fvec1, const float* in</td>
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<pre style="margin: 0;"> <span id="LC869" class="line" lang="cpp"><span class="p">}</span></span>
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<pre style="margin: 0;"> <span id="LC870" class="line" lang="cpp"></span>
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<pre style="margin: 0;"> <span id="LC871" class="line" lang="cpp"><span class="c1" style="color: #998; font-style: italic;">// Briefly experimented with trying to speed this up, didn't make any progress.</span></span>
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<pre style="margin: 0;">+<span id="LC872" class="line" lang="cpp"><span class="c1" style="color: #998; font-style: italic;">// Tried vDSP_mtransD() on macOS and mkl_domatcopy() on Linux, neither of those</span></span>
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873
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<pre style="margin: 0;">+<span id="LC873" class="line" lang="cpp"><span class="c1" style="color: #998; font-style: italic;">// helped, so it's likely there's no progress to be made.</span></span>
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<pre style="margin: 0;"> <span id="LC874" class="line" lang="cpp"><span class="kt" style="color: #458; font-weight: 600;">void</span> <span class="n" style="color: #333;">MatrixTransposeCopy</span><span class="p">(</span><span class="k" style="font-weight: 600;">const</span> <span class="kt" style="color: #458; font-weight: 600;">double</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333;">old_matrix</span><span class="p">,</span> <span class="kt" style="color: #458; font-weight: 600;">uint32_t</span> <span class="n" style="color: #333;">old_maj</span><span class="p">,</span> <span class="kt" style="color: #458; font-weight: 600;">uint32_t</span> <span class="n" style="color: #333;">new_maj</span><span class="p">,</span> <span class="kt" style="color: #458; font-weight: 600;">double</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333;">new_matrix_iter</span><span class="p">)</span> <span class="p">{</span></span>
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873
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875
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<pre style="margin: 0;"> <span id="LC875" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">for</span> <span class="p">(</span><span class="kt" style="color: #458; font-weight: 600;">uint32_t</span> <span class="n" style="color: #333;">new_maj_idx</span> <span class="o" style="font-weight: 600;">=</span> <span class="mi" style="color: #099;">0</span><span class="p">;</span> <span class="n" style="color: #333;">new_maj_idx</span> <span class="o" style="font-weight: 600;">!=</span> <span class="n" style="color: #333;">new_maj</span><span class="p">;</span> <span class="o" style="font-weight: 600;">++</span><span class="n" style="color: #333;">new_maj_idx</span><span class="p">)</span> <span class="p">{</span></span>
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874
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876
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<pre style="margin: 0;"> <span id="LC876" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">const</span> <span class="kt" style="color: #458; font-weight: 600;">double</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333;">old_matrix_col_iter</span> <span class="o" style="font-weight: 600;">=</span> <span class="o" style="font-weight: 600;">&</span><span class="p">(</span><span class="n" style="color: #333;">old_matrix</span><span class="p">[</span><span class="n" style="color: #333;">new_maj_idx</span><span class="p">]);</span></span>
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<a href="https://salsa.debian.org/med-team/plink2/-/commit/b5c5ffd9aa7fc65c0c8761c1630f4c5223910016#f5d85292088358ebd24c2a15cd3a9b7759ba61c9"><strong>plink2_matrix.h</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -95,9 +95,9 @@ extern "C" {</td>
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95
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95
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<pre style="margin: 0;"> <span id="LC95" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;"># endif</span></span>
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96
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<pre style="margin: 0;"> <span id="LC96" class="line" lang="cpp"><span class="k" style="font-weight: 600;">static_assert</span><span class="p">(</span><span class="k" style="font-weight: 600;">sizeof</span><span class="p">(</span><span class="n" style="color: #333;">MKL_INT</span><span class="p">)</span> <span class="o" style="font-weight: 600;">==</span> <span class="mi" style="color: #099;">8</span><span class="p">,</span> <span class="s" style="color: #d14;">"Unexpected MKL_INT size."</span><span class="p">);</span></span>
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97
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97
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<pre style="margin: 0;"> <span id="LC97" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;"># else</span></span>
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98
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<pre style="margin: 0;">-<span id="LC98" class="line" lang="cpp"><span class="idiff left right"> </span><span class="c1" style="color: #998; font-style: italic;">// If you want 64-bit index support, but not MKL (e.g. you're targeting an</span></span>
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99
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<pre style="margin: 0;">-<span id="LC99" class="line" lang="cpp"><span class="idiff left right"> </span><span class="c1" style="color: #998; font-style: italic;">// AMD processor), modify the Makefile to link to a LAPACK library recompiled</span></span>
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100
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<pre style="margin: 0;">-<span id="LC100" class="line" lang="cpp"><span class="idiff left right"> </span><span class="c1" style="color: #998; font-style: italic;">// with -fdefault-integer-8.</span></span>
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<pre style="margin: 0;">+<span id="LC98" class="line" lang="cpp"><span class="c1" style="color: #998; font-style: italic;">// If you want 64-bit index support, but not MKL (e.g. you're targeting an</span></span>
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<pre style="margin: 0;">+<span id="LC99" class="line" lang="cpp"><span class="c1" style="color: #998; font-style: italic;">// AMD processor), modify the Makefile to link to a LAPACK library recompiled</span></span>
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<pre style="margin: 0;">+<span id="LC100" class="line" lang="cpp"><span class="c1" style="color: #998; font-style: italic;">// with -fdefault-integer-8.</span></span>
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101
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<pre style="margin: 0;"> <span id="LC101" class="line" lang="cpp"></span>
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102
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102
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<pre style="margin: 0;"> <span id="LC102" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;"># ifdef USE_CBLAS_XGEMM</span></span>
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103
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103
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<pre style="margin: 0;"> <span id="LC103" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;"># include <cblas.h></span></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -133,6 +133,9 @@ static_assert(sizeof(MKL_INT) == 8, "Unexpected MKL_INT size.");</td>
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133
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<pre style="margin: 0;"> <span id="LC133" class="line" lang="cpp"> <span class="kt" style="color: #458; font-weight: 600;">float</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333;">sy</span><span class="p">,</span> <span class="n" style="color: #333;">__CLPK_integer</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333;">incy</span><span class="p">);</span></span>
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134
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<pre style="margin: 0;"> <span id="LC134" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;"># endif</span></span>
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<pre style="margin: 0;"> <span id="LC135" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;"># endif // !USE_MKL</span></span>
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<pre style="margin: 0;">+<span id="LC136" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;"># ifdef USE_CUDA</span></span>
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<pre style="margin: 0;">+<span id="LC137" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;"># include "cuda/plink2_matrix_cuda.h"</span></span>
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138
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<pre style="margin: 0;">+<span id="LC138" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;"># endif</span></span>
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136
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139
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<pre style="margin: 0;"> <span id="LC139" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;"># endif</span></span>
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137
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140
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<pre style="margin: 0;"> <span id="LC140" class="line" lang="cpp"></span>
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138
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141
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<pre style="margin: 0;"> <span id="LC141" class="line" lang="cpp"> <span class="kt" style="color: #458; font-weight: 600;">void</span> <span class="n" style="color: #333;">xerbla_</span><span class="p">(</span><span class="kt" style="color: #458; font-weight: 600;">void</span><span class="p">);</span></span>
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