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<h3>
Rebecca N. Palmer pushed to branch master
at <a href="https://salsa.debian.org/med-team/snakemake">Debian Med / snakemake</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/snakemake/-/commit/b23c932d1ee6bf0a9458601b4ee019aa6d7951aa">b23c932d</a></strong>
<div>
<span>by Rebecca N. Palmer</span>
<i>at 2020-05-30T16:16:45+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 5.18.1</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/snakemake/-/commit/e5f7634aced018e6041caf5f7a4a628de052d0b5">e5f7634a</a></strong>
<div>
<span>by Rebecca N. Palmer</span>
<i>at 2020-05-30T16:17:03+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Update upstream source from tag 'upstream/5.18.1'
Update to upstream version '5.18.1'
with Debian dir 963c8334e09e09130a56419648eb20e144613667</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/snakemake/-/commit/266bd5898116b8f0113fc0d23c9b7323cf00b5a7">266bd589</a></strong>
<div>
<span>by Rebecca N. Palmer</span>
<i>at 2020-05-30T22:17:06+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Refresh patches
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/snakemake/-/commit/87508ef3c264f226389ca0ebf2932d65daaa7e80">87508ef3</a></strong>
<div>
<span>by Rebecca N. Palmer</span>
<i>at 2020-05-30T22:18:41+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Docs: work around Sphinx bug 7516.
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/snakemake/-/commit/a6d2828b5ae34e650a2c25da68b38078784574a6">a6d2828b</a></strong>
<div>
<span>by Rebecca N. Palmer</span>
<i>at 2020-05-31T10:25:11+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Skip more tests with not-in-Debian dependencies.
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/snakemake/-/commit/0cce8b561da77474c00903a853f7f7b056ec3bdd">0cce8b56</a></strong>
<div>
<span>by Rebecca N. Palmer</span>
<i>at 2020-05-31T10:34:44+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Update override path
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/snakemake/-/commit/e2d3591dc1947cd9e203373cdbb40178fdef4e10">e2d3591d</a></strong>
<div>
<span>by Rebecca N. Palmer</span>
<i>at 2020-05-31T10:54:04+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Delete unused patch
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/snakemake/-/commit/b187c1950783f14244f58cc4691eaa3c25f5c39c">b187c195</a></strong>
<div>
<span>by Rebecca N. Palmer</span>
<i>at 2020-05-31T11:03:45+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Bump dephelper compat to 13, remove now-builtin rules.
</pre>
</li>
</ul>
<h4>30 changed files:</h4>
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<li class="file-stats">
<a href="#5c5ee4afb3fab2334411b3025d137240676c72c3">
<span class="new-file">
+
.github/workflows/docker-publish.yml
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<li class="file-stats">
<a href="#c778226b6c4c0fb51cf7942c8ee1f3d9fc1249d0">
.github/workflows/main.yml
</a>
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<li class="file-stats">
<a href="#45267e3a9556cafa9cb7b61dab7a3b6659e73aad">
CHANGELOG.rst
</a>
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<li class="file-stats">
<a href="#6651ddff6eb82c840ced7c1dddee15c6e1913dd4">
Dockerfile
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<li class="file-stats">
<a href="#8ec9a00bfd09b3190ac6b22251dbb1aa95a0579d">
README.md
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<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
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<li class="file-stats">
<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
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<li class="file-stats">
<a href="#cf10603a1c12bbbc3e45d0711e954076cdb8820f">
debian/patches/0009-skip-test-without-google-cloud-sdk.patch
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</li>
<li class="file-stats">
<a href="#3a60a3d8ad77c5d7b9f50f6d9e07887ec385a803">
debian/patches/local_javascript.patch
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<li class="file-stats">
<a href="#e246f69e945a7c2e9a8e25cfacfcac7714c92b69">
debian/patches/python3.patch
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<a href="#aef4fc475d9c2698d0de9e80b3256895c791f41e">
debian/patches/remove_ccbysa_snippets.patch
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<li class="file-stats">
<a href="#6315071dfc30fef957f76845b1a74813e8ebadec">
<span class="deleted-file">
−
debian/patches/security.patch
</span>
</a>
</li>
<li class="file-stats">
<a href="#260fb267aa59c740952b443e87e306a192a8d82e">
debian/patches/workaround_sphinx_issue.patch
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<li class="file-stats">
<a href="#8756c63497c8dc39f7773438edf53b220c773f67">
debian/rules
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<li class="file-stats">
<a href="#17f221d39ad048d654ebe57de7c20c65deadaa4b">
debian/snakemake.lintian-overrides
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<li class="file-stats">
<a href="#8c77cc51b09ef1f7b294222180bcdb53ebb70e2f">
debian/tests/run-unit-test
</a>
</li>
<li class="file-stats">
<a href="#5026e4863ea12b5792ff52f548d70284c3c1a181">
docs/executing/cli.rst
</a>
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<li class="file-stats">
<a href="#7e143b2e3a88fc7b437114c03b2302f5afa981ec">
docs/executing/cluster-cloud.rst
→
docs/executing/cloud.rst
</a>
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<li class="file-stats">
<a href="#9e4177ae5c810ed5bbbf8563e9a91dfc95913981">
<span class="new-file">
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docs/executing/cluster.rst
</span>
</a>
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<li class="file-stats">
<a href="#a51db43db8671eca05cb09411a68924732699541">
<span class="new-file">
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docs/executor_tutorial/google_lifesciences.rst
</span>
</a>
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<li class="file-stats">
<a href="#cd3fd8615ae98556916b352d1dff137ff81c4027">
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docs/executor_tutorial/tutorial.rst
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<li class="file-stats">
<a href="#c2613fad0d5091ba2a5f7c837f3e32b3e0787079">
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docs/executor_tutorial/workflow/quals.svg
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<li class="file-stats">
<a href="#5ca757234e23fa6f6456527d7776a0656720a38b">
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docs/executor_tutorial/workflow/results-google-storage.png
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<li class="file-stats">
<a href="#80dcf984501bb75109f4bfd2f28fef8898204737">
<span class="new-file">
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docs/executor_tutorial/workflow/upload-google-storage.png
</span>
</a>
</li>
<li class="file-stats">
<a href="#d0153cac95479af9bfb99b746b633bc8255bb53a">
docs/index.rst
</a>
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<li class="file-stats">
<a href="#cc31921d407405d25ab3b66029cd6f032441fd24">
docs/project_info/contributing.rst
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<li class="file-stats">
<a href="#945ec74fc1c17902d98bca84b7a1f0dfd755c01b">
docs/snakefiles/deployment.rst
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<li class="file-stats">
<a href="#54c391de2500e0856c23737daf64f9d931569110">
<span class="deleted-file">
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environment.yml
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</a>
</li>
<li class="file-stats">
<a href="#8e2edce0d507e1297474f25c00cae94258db38d8">
setup.py
</a>
</li>
<li class="file-stats">
<a href="#d366205d7cd679ff6d4a61f70728e92537101763">
snakemake/__init__.py
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</ul>
<h5>The diff was not included because it is too large.</h5>
</div>
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<p style="font-size: small; color: #777;">
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