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<h3>
Michael R. Crusoe pushed to branch master
at <a href="https://salsa.debian.org/med-team/cnvkit">Debian Med / cnvkit</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/cnvkit/-/commit/db6f593ba1151efdaa4fb57ecd02c43f63264c5c">db6f593b</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2020-06-01T15:47:52+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: New upstream version
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/cnvkit/-/commit/ce1f31f40ae0f1e429bc8b92a4688335915eaaef">ce1f31f4</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2020-06-01T15:47:53+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 0.9.7</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/cnvkit/-/commit/90e0107fbafb967c85aed84ba5af852aeaa71f63">90e0107f</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2020-06-01T15:48:59+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Update upstream source from tag 'upstream/0.9.7'
Update to upstream version '0.9.7'
with Debian dir 119af8b8d63b91351a516c09daae24f6a7a6eab1</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/cnvkit/-/commit/e72c89c7157a97d0306e8228daf4383910ecf6e0">e72c89c7</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2020-06-01T15:48:59+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: Standards-Version: 4.5.0
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/cnvkit/-/commit/9c6e7bf1736453b4793081d327f9a6f201057e1f">9c6e7bf1</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2020-06-01T16:05:48+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Refreshed the patches
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/cnvkit/-/commit/58bacf712db7598dec505f040f00e31c0efad3de">58bacf71</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2020-06-01T16:06:07+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: Add salsa-ci file
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/cnvkit/-/commit/719c886e88c626e7134d89daa3b9525ebbf181bc">719c886e</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2020-06-01T16:06:07+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: Rules-Requires-Root: no
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/cnvkit/-/commit/5b12bd07ba2c1c44642573cf76f782b72ae3949c">5b12bd07</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2020-06-01T16:06:18+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Set upstream metadata fields: Bug-Database, Bug-Submit, Repository, Repository-Browse.
Fixes: lintian: upstream-metadata-missing-bug-tracking
See-also: https://lintian.debian.org/tags/upstream-metadata-missing-bug-tracking.html
Fixes: lintian: upstream-metadata-missing-repository
See-also: https://lintian.debian.org/tags/upstream-metadata-missing-repository.html
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/cnvkit/-/commit/04f85713250909d6d30f6661b6ebe9aff1c6ff40">04f85713</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2020-06-01T16:20:02+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">release 0.9.7-1 to unstable
</pre>
</li>
</ul>
<h4>30 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#dea01dd89a3b602828e630677fde5d77c06441c8">
.travis.yml
</a>
</li>
<li class="file-stats">
<a href="#561b88e19de321ca62c7590bbb350765fb110905">
README.rst
</a>
</li>
<li class="file-stats">
<a href="#52c9d153f719ba85e9b82e70be557ec9d3275a1e">
cnvkit.py
</a>
</li>
<li class="file-stats">
<a href="#42d036b285f793fa4706218270f28c4e0af74569">
cnvlib/_version.py
</a>
</li>
<li class="file-stats">
<a href="#0bb9fa1a6130cb3bdc4393b8b2032ae11d3c9f16">
cnvlib/access.py
</a>
</li>
<li class="file-stats">
<a href="#023ef3cf31e96bcfb114b17e9eeee40b3559216c">
cnvlib/antitarget.py
</a>
</li>
<li class="file-stats">
<a href="#0dd6dacf3a32d43e909fde3613a86d002941bcc6">
cnvlib/autobin.py
</a>
</li>
<li class="file-stats">
<a href="#15480036fba0b7dad855fda6856199d0684fa1c9">
cnvlib/batch.py
</a>
</li>
<li class="file-stats">
<a href="#bdde3f61ae7f7287d446832829cfd862bd0c5b6e">
cnvlib/ztest.py
→
cnvlib/bintest.py
</a>
</li>
<li class="file-stats">
<a href="#5650a2db29370ab5ab223eb5e22f2cda64ad6185">
cnvlib/call.py
</a>
</li>
<li class="file-stats">
<a href="#6954ca2a176e46a2c2f6da9790b0d7ab39e466e8">
<span class="new-file">
+
cnvlib/cluster.py
</span>
</a>
</li>
<li class="file-stats">
<a href="#9c039cbe0d6f382867ffe4356a402c3d571fcb89">
cnvlib/cmdutil.py
</a>
</li>
<li class="file-stats">
<a href="#3c97ce14774c9dcaaf77c07a55b41a9bb29613dd">
cnvlib/cnary.py
</a>
</li>
<li class="file-stats">
<a href="#37071ebf7e39e57e21ff893de63e92a9b7f6fcba">
cnvlib/commands.py
</a>
</li>
<li class="file-stats">
<a href="#2d80ee87fcbf5798dce3684c444d415a6d37bf35">
cnvlib/core.py
</a>
</li>
<li class="file-stats">
<a href="#b1c2e997cbcbc150dfbb18cabfe5fbefc6fe41ce">
cnvlib/coverage.py
</a>
</li>
<li class="file-stats">
<a href="#688889bacd2109480ea9a077eba5f2cd9944b61f">
cnvlib/descriptives.py
</a>
</li>
<li class="file-stats">
<a href="#62d353493b66e1cacfcb64b472183da221ff7045">
cnvlib/diagram.py
</a>
</li>
<li class="file-stats">
<a href="#e0b9b6c135ef19da5b4d4718f3f11edff2251b58">
cnvlib/export.py
</a>
</li>
<li class="file-stats">
<a href="#6a9840d2eac663f8ebd4f5d048ee6f9ee950255b">
cnvlib/fix.py
</a>
</li>
<li class="file-stats">
<a href="#37aed3c7907262a902915aecc793c52c3a48002f">
cnvlib/heatmap.py
</a>
</li>
<li class="file-stats">
<a href="#d5de4c64ce69f26a9edcef51de9217f0782e4cd5">
cnvlib/import_rna.py
</a>
</li>
<li class="file-stats">
<a href="#162e6c638a543a28f67daa161a17301fb9299add">
cnvlib/importers.py
</a>
</li>
<li class="file-stats">
<a href="#cfa99f9009249da7977281377b21f130af68fe64">
cnvlib/metrics.py
</a>
</li>
<li class="file-stats">
<a href="#81740ab84365142008e8644f92e0c284ffa5fbc8">
cnvlib/parallel.py
</a>
</li>
<li class="file-stats">
<a href="#c4b161fc9507aa8cc3c8f268ddd0dcc32a9bb9e3">
cnvlib/plots.py
</a>
</li>
<li class="file-stats">
<a href="#e302820aded8fa24cbe10b7982e8c81159ed4875">
cnvlib/reference.py
</a>
</li>
<li class="file-stats">
<a href="#7b2b1c44e1461bc889009b1993bafbdf3768bc70">
cnvlib/reports.py
</a>
</li>
<li class="file-stats">
<a href="#53cf62a516f30d088c59651d6a2d958620dd5fbc">
cnvlib/rna.py
</a>
</li>
<li class="file-stats">
<a href="#042ad1cb073aba7f730f360c07cf2df6491e983a">
cnvlib/samutil.py
</a>
</li>
</ul>
<h5>The diff was not included because it is too large.</h5>
</div>
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<a href="https://salsa.debian.org/med-team/cnvkit/-/compare/a07cec43aca455206d07305d27254edc282d08ba...04f85713250909d6d30f6661b6ebe9aff1c6ff40">View it on GitLab</a>.
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