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<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/med-team/lumpy-sv">Debian Med / lumpy-sv</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/lumpy-sv/-/commit/ea35aff63187a9bd6ed827df45574cefb36c2e31">ea35aff6</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-06-01T15:10:50+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Its to hard to remove bedtools code copy since bedtools has no development library
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/lumpy-sv/-/commit/02abd546a1568e2ef8d14b43e5040023a908fccd">02abd546</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-06-01T15:11:22+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 0.3.0+dfsg</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/lumpy-sv/-/commit/38484fe2e5b9e66002395864cedca5740b8f31b3">38484fe2</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-06-01T15:11:48+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Update upstream source from tag 'upstream/0.3.0+dfsg'
Update to upstream version '0.3.0+dfsg'
with Debian dir cf23e95201bfb0739f6a0dabf129360ac56471ab</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/lumpy-sv/-/commit/e3e71922d785fbefb1c3c5f91d22812c133caa6e">e3e71922</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-06-01T15:14:42+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Add copyright for bedtools files
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/lumpy-sv/-/commit/b501ff253c69794a3d1113ce47b5feb78ae2cc99">b501ff25</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-06-01T16:03:49+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Attempt to build including bedtools code copy
</pre>
</li>
</ul>
<h4>29 changed files:</h4>
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<li class="file-stats">
<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
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<li class="file-stats">
<a href="#adb7f75f79e3bb85eb62912a2904c5d24af878fb">
debian/copyright
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<li class="file-stats">
<a href="#ee54dc79014b3def963898e50c98877d46c6b27e">
debian/patches/use_debian_packaged_libs.patch
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<li class="file-stats">
<a href="#d9086b0ff6fd375af6beb6003d00871b00053398">
<span class="new-file">
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src/utils/BamTools-Ancillary/BamAncillary.cpp
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<a href="#007d172058ba1352d25195e859b6b2f7c759be18">
<span class="new-file">
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src/utils/BamTools-Ancillary/BamAncillary.h
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<a href="#fa0b94cea1e8e79f14a3f54cda3d8cd7a080a047">
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src/utils/BamTools-Ancillary/Makefile
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<a href="#cd75d2dd9381adbe09d988109d778e216830a976">
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src/utils/BlockedIntervals/BlockedIntervals.cpp
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<a href="#ef4789be755ae4d2307369158f548056eb428a20">
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src/utils/BlockedIntervals/BlockedIntervals.h
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<a href="#5ca3c1f3dd7b132364e79f3108eb004485e3c53d">
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src/utils/BlockedIntervals/Makefile
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<a href="#aedc7b9a79ffc0b37f311108b0a88b3b2d3299c4">
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src/utils/Point/Point.h
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src/utils/VectorOps/Makefile
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src/utils/VectorOps/VectorOps.cpp
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<a href="#c6004fa22e0f4af295e99ec9783f0ceeba5bd900">
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src/utils/VectorOps/VectorOps.h
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<a href="#7627d20173e7ee4e07dc384d8d91b5aabb8c3ac1">
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src/utils/bedFile/Makefile
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<li class="file-stats">
<a href="#91e6c7d58736361b8bf7d250b84d562767dfe971">
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src/utils/bedFile/bedFile.cpp
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<li class="file-stats">
<a href="#f2a974305c6341a7ab29e98c5b41a25f8e78cd71">
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src/utils/bedFile/bedFile.h
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<a href="#0f98fab8522bb19dd5dfe87344a52ec5211fe1d4">
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src/utils/bedFilePE/Makefile
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<a href="#05bac61fc43494ac4863d9b23a7020d1d9cf152b">
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src/utils/bedFilePE/bedFilePE.cpp
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<a href="#11f069f797f8d47b2eaa84dc29b13c866d04eed8">
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src/utils/bedFilePE/bedFilePE.h
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<a href="#55cb38a9e3ca58e8f76b989962b7a7b0154a74de">
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src/utils/bedGraphFile/Makefile
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<a href="#8399f0bdb841d8522543e051a2f514c482c40b05">
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src/utils/bedGraphFile/bedGraphFile.cpp
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<a href="#ed6b88f5199d9f7d2647295fba3075761517ebeb">
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src/utils/bedGraphFile/bedGraphFile.h
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<a href="#daa380553a1324a1f04621ce7839a7380ad3a34e">
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src/utils/chromsweep/Makefile
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<li class="file-stats">
<a href="#ab182f2a0caf8d92cde0e506f9fcef6c806e2af4">
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src/utils/chromsweep/chromsweep.cpp
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<a href="#f3f15a392b418c4841bfc098767f928e1cfc31c1">
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src/utils/chromsweep/chromsweep.h
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<li class="file-stats">
<a href="#eb167a8df34d5144dd3019144d49731cf0eb231f">
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src/utils/fileType/Makefile
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<li class="file-stats">
<a href="#02c40013f2100e44adce9fba2f1d5daa533dbdb3">
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src/utils/fileType/fileType.cpp
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<li class="file-stats">
<a href="#75cab330b69da993b4f27d1214a56a619f11bc1d">
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src/utils/fileType/fileType.h
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<li class="file-stats">
<a href="#ecac95e5fd54923cb286365b78530ed621b10378">
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src/utils/genomeFile/Makefile
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<h5>The diff was not included because it is too large.</h5>
</div>
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