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<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/med-team/community/helper-scripts">Debian Med / community / helper-scripts</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/community/helper-scripts/-/commit/ff1f588638d1604fecac86dadb2a25148d454c1d">ff1f5886</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-06-01T13:50:23+00:00</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">automatic update
</pre>
</li>
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<h4>2 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#f6d55d24085decec06151dd27f30199089d856ca">
debian-med-tests.txt
</a>
</li>
<li class="file-stats">
<a href="#2654e31016bcee9bbe05d462121706cc8ed368af">
outdated_med-packages.txt
</a>
</li>
</ul>
<h4>Changes:</h4>
<li id="f6d55d24085decec06151dd27f30199089d856ca">
<a href="https://salsa.debian.org/med-team/community/helper-scripts/-/commit/ff1f588638d1604fecac86dadb2a25148d454c1d#f6d55d24085decec06151dd27f30199089d856ca"><strong>debian-med-tests.txt</strong></a>
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="plaintext">Last-Update: Mon, 01 Jun 2020 <span class="idiff left right">01</span>:42:03 +0000</span>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">Last-Update: Mon, 01 Jun 2020 <span class="idiff left right">13</span>:42:03 +0000</span>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext"> Source | Vote | Tasks | Tags </span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext">-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------</span>
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<pre style="margin: 0;">-<span id="LC5" class="line" lang="plaintext"> dcmtk | 188 | {imaging,covid-19} | </span>
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<pre style="margin: 0;">-<span id="LC6" class="line" lang="plaintext"> orthanc | 94 | {practice,imaging,covid-19} | </span>
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<pre style="margin: 0;">-<span id="LC7" class="line" lang="plaintext"> gdcm | 60 | {imaging-dev} | </span>
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<pre style="margin: 0;">-<span id="LC8" class="line" lang="plaintext"> orthanc-wsi | 45 | {his,covid-19,imaging,practice,oncology,laboratory} | </span>
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<pre style="margin: 0;">-<span id="LC9" class="line" lang="plaintext"> htsjdk | 31 | {bio-dev} | </span>
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<pre style="margin: 0;">-<span id="LC10" class="line" lang="plaintext"> dicom3tools | 28 | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC11" class="line" lang="plaintext"> dicomscope | 27 | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC12" class="line" lang="plaintext"> dcm2niix | 26 | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC13" class="line" lang="plaintext"> insighttoolkit4 | 18 | {imaging-dev} | </span>
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<pre style="margin: 0;">-<span id="LC14" class="line" lang="plaintext"> gdcm | 17 | {covid-19,imaging} | </span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext"> dcmtk | 190 | {covid-19,imaging} | </span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext"> orthanc | 94 | {imaging,covid-19,practice} | </span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext"> gdcm | 59 | {imaging-dev} | </span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext"> orthanc-wsi | 45 | {imaging,laboratory,practice,covid-19,his,oncology} | </span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="plaintext"> htsjdk | 33 | {bio-dev} | </span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="plaintext"> dicom3tools | 30 | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="plaintext"> dicomscope | 29 | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="plaintext"> dcm2niix | 28 | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="plaintext"> gdcm | 20 | {covid-19,imaging} | </span>
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="plaintext"> insighttoolkit4 | 19 | {imaging-dev} | </span>
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="plaintext"> minc-tools | 18 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC16" class="line" lang="plaintext"> gnumed-server | 17 | {covid-19,practice} | </span>
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<pre style="margin: 0;">-<span id="LC16" class="line" lang="plaintext"> minc-tools | 16 | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC17" class="line" lang="plaintext"> invesalius | 15 | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="plaintext"> invesalius | 16 | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC18" class="line" lang="plaintext"> vtk-dicom | 16 | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="plaintext"> pixelmed | 15 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC20" class="line" lang="plaintext"> king | 14 | {imaging,typesetting} | </span>
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<pre style="margin: 0;">-<span id="LC19" class="line" lang="plaintext"> <span class="idiff left right">pixelmed | 14 | {imaging</span>} | </span>
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<pre style="margin: 0;">-<span id="LC20" class="line" lang="plaintext"> <span class="idiff left right">vtk-dicom </span> | 14 | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC21" class="line" lang="plaintext"> <span class="idiff left right">ngs-sdk | 14 | {bio-dev</span>} | </span>
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<pre style="margin: 0;">+<span id="LC22" class="line" lang="plaintext"> <span class="idiff left right">plastimatch</span> | 14 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC23" class="line" lang="plaintext"> gdcm | 13 | {imaging-dev} | </span>
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<pre style="margin: 0;">-<span id="LC22" class="line" lang="plaintext"> ngs-sdk | 12 | {bio-dev} | </span>
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<pre style="margin: 0;">-<span id="LC23" class="line" lang="plaintext"> openslide | 12 | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC24" class="line" lang="plaintext"> plastimatch | 12 | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC24" class="line" lang="plaintext"> openslide | 13 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC25" class="line" lang="plaintext"> stacks | 12 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC26" class="line" lang="plaintext"> adun.app | 11 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC27" class="line" lang="plaintext"> biosig4c++ | 11 | {physics,imaging} | </span>
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<pre style="margin: 0;"> <span id="LC28" class="line" lang="plaintext"> obitools | 11 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC29" class="line" lang="plaintext"> librg-utils-perl | 10 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC29" class="line" lang="plaintext"> psychopy | 10 | {psychology} | </span>
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<pre style="margin: 0;"> <span id="LC30" class="line" lang="plaintext"> biojava-live | 9 | {bio-dev} | </span>
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<pre style="margin: 0;">-<span id="LC31" class="line" lang="plaintext"> <span class="idiff left right">biosig4c++ | 9 | {imaging,physics}</span> | </span>
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<pre style="margin: 0;">+<span id="LC31" class="line" lang="plaintext"> <span class="idiff left right">psychopy | 9 | {psychology} </span> | </span>
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<pre style="margin: 0;"> <span id="LC32" class="line" lang="plaintext"> jebl2 | 8 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC33" class="line" lang="plaintext"> mipe | 8 | {bio,cloud} | </span>
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<pre style="margin: 0;"> <span id="LC34" class="line" lang="plaintext"> radiant | 8 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC35" class="line" lang="plaintext"> alter-sequence-alignment | 7 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC36" class="line" lang="plaintext"> arden | 7 | {<span class="idiff left right">bio,cloud</span>} | </span>
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<pre style="margin: 0;">+<span id="LC36" class="line" lang="plaintext"> arden | 7 | {<span class="idiff left right">cloud,bio</span>} | </span>
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<pre style="margin: 0;"> <span id="LC37" class="line" lang="plaintext"> biomaj3-cli | 7 | {cloud} | </span>
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<pre style="margin: 0;"> <span id="LC38" class="line" lang="plaintext"> bio-tradis | 7 | {bio-dev,bio} | </span>
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<pre style="margin: 0;"> <span id="LC39" class="line" lang="plaintext"> bppsuite | 7 | {bio} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -44,7 +44,6 @@ Last-Update: Mon, 01 Jun 2020 01:42:03 +0000</td>
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<pre style="margin: 0;"> <span id="LC44" class="line" lang="plaintext"> libminc | 7 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC45" class="line" lang="plaintext"> maqview | 7 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC46" class="line" lang="plaintext"> ncbi-seg | 7 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC47" class="line" lang="plaintext"> ngs-sdk | 7 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC47" class="line" lang="plaintext"> norsp | 7 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC48" class="line" lang="plaintext"> piler | 7 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC49" class="line" lang="plaintext"> sibsim4 | 7 | {cloud,bio} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -61,15 +60,16 @@ Last-Update: Mon, 01 Jun 2020 01:42:03 +0000</td>
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<pre style="margin: 0;"> <span id="LC60" class="line" lang="plaintext"> embassy-domalign | 6 | {cloud,bio} | </span>
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<pre style="margin: 0;"> <span id="LC61" class="line" lang="plaintext"> embassy-domsearch | 6 | {cloud,bio} | </span>
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<pre style="margin: 0;"> <span id="LC62" class="line" lang="plaintext"> gatb-core | 6 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC64" class="line" lang="plaintext"> melting | 6 | {<span class="idiff left right">cloud,bio</span>} | </span>
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<pre style="margin: 0;">+<span id="LC63" class="line" lang="plaintext"> melting | 6 | {<span class="idiff left right">bio,cloud</span>} | </span>
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<pre style="margin: 0;"> <span id="LC64" class="line" lang="plaintext"> mrs | 6 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC65" class="line" lang="plaintext"> ngs-sdk | 6 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC66" class="line" lang="plaintext"> orthanc-webviewer | 6 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC67" class="line" lang="plaintext"> phast | 6 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC68" class="line" lang="plaintext"> pymia | 6 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC69" class="line" lang="plaintext"> seer | 6 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC70" class="line" lang="plaintext"> seqtools | 6 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC71" class="line" lang="plaintext"> sickle | 6 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC72" class="line" lang="plaintext"> sigma-align | 6 | {bio<span class="idiff left right">,cloud,bio-phylogeny</span>} | </span>
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<pre style="margin: 0;">+<span id="LC72" class="line" lang="plaintext"> sigma-align | 6 | {bio<span class="idiff left right">-phylogeny,bio,cloud</span>} | </span>
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<pre style="margin: 0;"> <span id="LC73" class="line" lang="plaintext"> staden | 6 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC74" class="line" lang="plaintext"> transtermhp | 6 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC75" class="line" lang="plaintext"> assemblytics | 5 | {bio} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -84,7 +84,7 @@ Last-Update: Mon, 01 Jun 2020 01:42:03 +0000</td>
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<pre style="margin: 0;"> <span id="LC84" class="line" lang="plaintext"> dindel | 5 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC85" class="line" lang="plaintext"> elastix | 5 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC86" class="line" lang="plaintext"> estscan | 5 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC87" class="line" lang="plaintext"> freebayes | 5 | {<span class="idiff left right">bio,covid-19</span>} | </span>
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<pre style="margin: 0;">+<span id="LC87" class="line" lang="plaintext"> freebayes | 5 | {<span class="idiff left right">covid-19,bio</span>} | </span>
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<pre style="margin: 0;"> <span id="LC88" class="line" lang="plaintext"> harvest-tools | 5 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC89" class="line" lang="plaintext"> ipig | 5 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC90" class="line" lang="plaintext"> jellyfish1 | 5 | {bio} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -92,28 +92,27 @@ Last-Update: Mon, 01 Jun 2020 01:42:03 +0000</td>
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<pre style="margin: 0;"> <span id="LC92" class="line" lang="plaintext"> lagan | 5 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC93" class="line" lang="plaintext"> libdivsufsort | 5 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC94" class="line" lang="plaintext"> libncl | 5 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC95" class="line" lang="plaintext"> mapsembler2 | 5 | {<span class="idiff left right">cloud,bio</span>} | </span>
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<pre style="margin: 0;">+<span id="LC95" class="line" lang="plaintext"> mapsembler2 | 5 | {<span class="idiff left right">bio,cloud</span>} | </span>
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<pre style="margin: 0;"> <span id="LC96" class="line" lang="plaintext"> murasaki | 5 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC97" class="line" lang="plaintext"> neobio | 5 | {cloud,bio} | </span>
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<pre style="margin: 0;"> <span id="LC98" class="line" lang="plaintext"> nutsqlite | 5 | {tools} | </span>
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<pre style="margin: 0;"> <span id="LC99" class="line" lang="plaintext"> orthanc-dicomweb | 5 | {covid-19,imaging} | </span>
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<pre style="margin: 0;"> <span id="LC100" class="line" lang="plaintext"> orthanc-mysql | 5 | {imaging} | </span>
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101
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<pre style="margin: 0;"> <span id="LC101" class="line" lang="plaintext"> paraclu | 5 | {cloud,bio} | </span>
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<pre style="margin: 0;">-<span id="LC102" class="line" lang="plaintext"> phyutility | 5 | {<span class="idiff left right">bio,cloud</span>} | </span>
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<pre style="margin: 0;">+<span id="LC102" class="line" lang="plaintext"> phyutility | 5 | {<span class="idiff left right">cloud,bio</span>} | </span>
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<pre style="margin: 0;"> <span id="LC103" class="line" lang="plaintext"> predictprotein | 5 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC104" class="line" lang="plaintext"> prime-phylo | 5 | {<span class="idiff left right">bio,cloud</span>} | </span>
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<pre style="margin: 0;">+<span id="LC104" class="line" lang="plaintext"> prime-phylo | 5 | {<span class="idiff left right">cloud,bio</span>} | </span>
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105
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<pre style="margin: 0;"> <span id="LC105" class="line" lang="plaintext"> probabel | 5 | {cloud,bio} | </span>
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<pre style="margin: 0;"> <span id="LC106" class="line" lang="plaintext"> pscan-tfbs | 5 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC107" class="line" lang="plaintext"> repeatmasker-recon | 5 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC108" class="line" lang="plaintext"> rtax | 5 | {<span class="idiff left right">cloud,bio</span>} | </span>
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<pre style="margin: 0;">+<span id="LC108" class="line" lang="plaintext"> rtax | 5 | {<span class="idiff left right">bio,cloud</span>} | </span>
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109
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<pre style="margin: 0;"> <span id="LC109" class="line" lang="plaintext"> saint | 5 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC110" class="line" lang="plaintext"> salmon | 5 | {covid-19,bio} | </span>
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<pre style="margin: 0;"> <span id="LC110" class="line" lang="plaintext"> seqtools | 5 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC111" class="line" lang="plaintext"> snap-aligner | 5 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC112" class="line" lang="plaintext"> soapsnp | 5 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC113" class="line" lang="plaintext"> squizz | 5 | {cloud,bio} | </span>
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<pre style="margin: 0;"> <span id="LC114" class="line" lang="plaintext"> treeview | 5 | {bio,bio-phylogeny} | </span>
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<pre style="margin: 0;">-<span id="LC116" class="line" lang="plaintext"> zalign | 5 | {<span class="idiff left right">cloud,bio</span>} | </span>
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<pre style="margin: 0;">+<span id="LC115" class="line" lang="plaintext"> zalign | 5 | {<span class="idiff left right">bio,cloud</span>} | </span>
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<pre style="margin: 0;"> <span id="LC116" class="line" lang="plaintext"> bart-view | 4 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC117" class="line" lang="plaintext"> canu | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC118" class="line" lang="plaintext"> centrifuge | 4 | {covid-19,bio} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -122,7 +121,7 @@ Last-Update: Mon, 01 Jun 2020 01:42:03 +0000</td>
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<pre style="margin: 0;"> <span id="LC121" class="line" lang="plaintext"> dicompyler | 4 | {oncology} | </span>
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<pre style="margin: 0;"> <span id="LC122" class="line" lang="plaintext"> fastml | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC123" class="line" lang="plaintext"> fsm-lite | 4 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC125" class="line" lang="plaintext"> gasic | 4 | {<span class="idiff left right">cloud,bio</span>} | </span>
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<pre style="margin: 0;">+<span id="LC124" class="line" lang="plaintext"> gasic | 4 | {<span class="idiff left right">bio,cloud</span>} | </span>
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<pre style="margin: 0;"> <span id="LC125" class="line" lang="plaintext"> ghmm | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC126" class="line" lang="plaintext"> jaligner | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC127" class="line" lang="plaintext"> jmodeltest | 4 | {bio-phylogeny,bio} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -130,16 +129,17 @@ Last-Update: Mon, 01 Jun 2020 01:42:03 +0000</td>
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<pre style="margin: 0;"> <span id="LC129" class="line" lang="plaintext"> microbegps | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC130" class="line" lang="plaintext"> mlv-smile | 4 | {cloud,bio} | </span>
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<pre style="margin: 0;"> <span id="LC131" class="line" lang="plaintext"> orthanc-postgresql | 4 | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC133" class="line" lang="plaintext"> perm | 4 | {<span class="idiff left right">cloud,bio</span>} | </span>
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<pre style="margin: 0;">+<span id="LC132" class="line" lang="plaintext"> perm | 4 | {<span class="idiff left right">bio,cloud</span>} | </span>
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<pre style="margin: 0;"> <span id="LC133" class="line" lang="plaintext"> phybin | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC134" class="line" lang="plaintext"> placnet | 4 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC136" class="line" lang="plaintext"> proalign | 4 | {bio<span class="idiff left right">,bio-phylogeny</span>} | </span>
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<pre style="margin: 0;">+<span id="LC135" class="line" lang="plaintext"> proalign | 4 | {bio<span class="idiff left right">-phylogeny,bio</span>} | </span>
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<pre style="margin: 0;"> <span id="LC136" class="line" lang="plaintext"> pscan-chip | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC137" class="line" lang="plaintext"> quorum | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC138" class="line" lang="plaintext"> rdp-alignment | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC139" class="line" lang="plaintext"> rdp-readseq | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC140" class="line" lang="plaintext"> roguenarok | 4 | {bio} | </span>
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141
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<pre style="margin: 0;"> <span id="LC141" class="line" lang="plaintext"> runcircos-gui | 4 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC142" class="line" lang="plaintext"> salmon | 4 | {covid-19,bio} | </span>
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143
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<pre style="margin: 0;"> <span id="LC143" class="line" lang="plaintext"> scythe | 4 | {bio} | </span>
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144
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<pre style="margin: 0;"> <span id="LC144" class="line" lang="plaintext"> segemehl | 4 | {bio} | </span>
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145
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<pre style="margin: 0;"> <span id="LC145" class="line" lang="plaintext"> seqtools | 4 | {bio} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -150,7 +150,7 @@ Last-Update: Mon, 01 Jun 2020 01:42:03 +0000</td>
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150
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<pre style="margin: 0;"> <span id="LC150" class="line" lang="plaintext"> vsearch | 4 | {bio,covid-19} | </span>
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151
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<pre style="margin: 0;"> <span id="LC151" class="line" lang="plaintext"> yaha | 4 | {bio} | </span>
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152
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<pre style="margin: 0;"> <span id="LC152" class="line" lang="plaintext"> beast2-mcmc | 3 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC153" class="line" lang="plaintext"> blasr | 3 | {bio<span class="idiff left right">-ngs,bio</span>} | </span>
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<pre style="margin: 0;">+<span id="LC153" class="line" lang="plaintext"> blasr | 3 | {bio<span class="idiff left right">,bio-ngs</span>} | </span>
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154
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<pre style="margin: 0;"> <span id="LC154" class="line" lang="plaintext"> dwgsim | 3 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC155" class="line" lang="plaintext"> elph | 3 | {bio} | </span>
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156
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<pre style="margin: 0;"> <span id="LC156" class="line" lang="plaintext"> hinge | 3 | {bio} | </span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="164" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -164,7 +164,7 @@ Last-Update: Mon, 01 Jun 2020 01:42:03 +0000</td>
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164
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<pre style="margin: 0;"> <span id="LC164" class="line" lang="plaintext"> pbdagcon | 3 | {bio} | </span>
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165
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<pre style="margin: 0;"> <span id="LC165" class="line" lang="plaintext"> phipack | 3 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC166" class="line" lang="plaintext"> poretools | 3 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC167" class="line" lang="plaintext"> prottest | 3 | {bio<span class="idiff left right">,bio-phylogeny</span>} | </span>
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<pre style="margin: 0;">+<span id="LC167" class="line" lang="plaintext"> prottest | 3 | {bio<span class="idiff left right">-phylogeny,bio</span>} | </span>
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<pre style="margin: 0;"> <span id="LC168" class="line" lang="plaintext"> qcumber | 3 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC169" class="line" lang="plaintext"> qrisk2 | 3 | {practice} | </span>
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<pre style="margin: 0;"> <span id="LC170" class="line" lang="plaintext"> rambo-k | 3 | {bio} | </span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="181" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -181,13 +181,13 @@ Last-Update: Mon, 01 Jun 2020 01:42:03 +0000</td>
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181
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181
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<pre style="margin: 0;"> <span id="LC181" class="line" lang="plaintext"> velvetoptimiser | 3 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC182" class="line" lang="plaintext"> atropos | 2 | {bio} | </span>
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183
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<pre style="margin: 0;"> <span id="LC183" class="line" lang="plaintext"> biosig4c++ | 2 | {physics,imaging-dev} | </span>
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<pre style="margin: 0;">-<span id="LC184" class="line" lang="plaintext"> biosig4c++ | 2 | {imaging-dev,physics} | </span>
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184
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<pre style="margin: 0;"> <span id="LC184" class="line" lang="plaintext"> blimps | 2 | {bio} | </span>
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186
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185
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<pre style="margin: 0;"> <span id="LC185" class="line" lang="plaintext"> busco | 2 | {covid-19,bio} | </span>
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187
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186
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<pre style="margin: 0;"> <span id="LC186" class="line" lang="plaintext"> getdata | 2 | {bio} | </span>
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187
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<pre style="margin: 0;"> <span id="LC187" class="line" lang="plaintext"> kma | 2 | {bio} | </span>
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189
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188
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<pre style="margin: 0;"> <span id="LC188" class="line" lang="plaintext"> libbio-mage-utils-perl | 2 | {bio-dev} | </span>
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190
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189
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<pre style="margin: 0;"> <span id="LC189" class="line" lang="plaintext"> libgff | 2 | {bio-dev} | </span>
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190
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<pre style="margin: 0;">+<span id="LC190" class="line" lang="plaintext"> libsbml | 2 | {bio-dev} | </span>
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191
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<pre style="margin: 0;"> <span id="LC191" class="line" lang="plaintext"> libvistaio | 2 | {imaging-dev} | </span>
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192
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<pre style="margin: 0;"> <span id="LC192" class="line" lang="plaintext"> logol | 2 | {bio} | </span>
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193
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<pre style="margin: 0;"> <span id="LC193" class="line" lang="plaintext"> mencal | 2 | {tools} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -195,22 +195,23 @@ Last-Update: Mon, 01 Jun 2020 01:42:03 +0000</td>
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195
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<pre style="margin: 0;"> <span id="LC195" class="line" lang="plaintext"> nanook | 2 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC196" class="line" lang="plaintext"> ngs-sdk | 2 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC197" class="line" lang="plaintext"> openslide | 2 | {imaging-dev} | </span>
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<pre style="margin: 0;">-<span id="LC198" class="line" lang="plaintext"> oscar | 2 | {<span class="idiff left right">data,tools,practice</span>} | </span>
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<pre style="margin: 0;">+<span id="LC198" class="line" lang="plaintext"> oscar | 2 | {<span class="idiff left right">practice,data,tools</span>} | </span>
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<pre style="margin: 0;"> <span id="LC199" class="line" lang="plaintext"> pal2nal | 2 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC200" class="line" lang="plaintext"> papyrus | 2 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC201" class="line" lang="plaintext"> pilon | 2 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC202" class="line" lang="plaintext"> plasmidseeker | 2 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC203" class="line" lang="plaintext"> rampler | 2 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC203" class="line" lang="plaintext"> samblaster | 2 | {<span class="idiff left right">bio,covid-19</span>} | </span>
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<pre style="margin: 0;">+<span id="LC204" class="line" lang="plaintext"> samblaster | 2 | {<span class="idiff left right">covid-19,bio</span>} | </span>
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<pre style="margin: 0;"> <span id="LC205" class="line" lang="plaintext"> samtools-legacy | 2 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC206" class="line" lang="plaintext"> seqan | 2 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC207" class="line" lang="plaintext"> sift | 2 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC207" class="line" lang="plaintext"> stringtie | 2 | {<span class="idiff left right">covid-19,bio</span>} | </span>
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<pre style="margin: 0;">+<span id="LC208" class="line" lang="plaintext"> stringtie | 2 | {<span class="idiff left right">bio,covid-19</span>} | </span>
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208
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209
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<pre style="margin: 0;"> <span id="LC209" class="line" lang="plaintext"> sweed | 2 | {bio} | </span>
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210
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<pre style="margin: 0;"> <span id="LC210" class="line" lang="plaintext"> trace2dbest | 2 | {bio} | </span>
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211
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<pre style="margin: 0;"> <span id="LC211" class="line" lang="plaintext"> tvc | 2 | {bio} | </span>
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212
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<pre style="margin: 0;"> <span id="LC212" class="line" lang="plaintext"> acedb | 1 | {cloud,bio} | </span>
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<pre style="margin: 0;"> <span id="LC213" class="line" lang="plaintext"> cufflinks | 1 | {cloud,bio} | </span>
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<pre style="margin: 0;">-<span id="LC213" class="line" lang="plaintext"> embassy-phylip | 1 | {<span class="idiff left right">bio,cloud</span>} | </span>
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<pre style="margin: 0;">+<span id="LC214" class="line" lang="plaintext"> embassy-phylip | 1 | {<span class="idiff left right">cloud,bio</span>} | </span>
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<pre style="margin: 0;"> <span id="LC215" class="line" lang="plaintext"> emboss-explorer | 1 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC216" class="line" lang="plaintext"> emmax | 1 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC217" class="line" lang="plaintext"> gatb-core | 1 | {bio-dev} | </span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="219" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -219,11 +220,9 @@ Last-Update: Mon, 01 Jun 2020 01:42:03 +0000</td>
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<pre style="margin: 0;"> <span id="LC220" class="line" lang="plaintext"> libctapimkt | 1 | {practice} | </span>
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<pre style="margin: 0;"> <span id="LC221" class="line" lang="plaintext"> libmaus2 | 1 | {bio-dev,covid-19} | </span>
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<pre style="margin: 0;"> <span id="LC222" class="line" lang="plaintext"> libmialm | 1 | {imaging-dev} | </span>
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<pre style="margin: 0;">-<span id="LC222" class="line" lang="plaintext"> libsbml | 1 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC223" class="line" lang="plaintext"> libxdf | 1 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC224" class="line" lang="plaintext"> opensurgsim | 1 | {imaging-dev} | </span>
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<pre style="margin: 0;">-<span id="LC225" class="line" lang="plaintext"> papyrus | 1 | {imaging-dev} | </span>
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<pre style="margin: 0;">-<span id="LC226" class="line" lang="plaintext"> python-py2bit | 1 | {bio-dev,bio} | </span>
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<pre style="margin: 0;">+<span id="LC225" class="line" lang="plaintext"> python-py2bit | 1 | {bio,bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC226" class="line" lang="plaintext"> python-scitrack | 1 | {covid-19} | </span>
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<pre style="margin: 0;"> <span id="LC227" class="line" lang="plaintext"> relion | 1 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC228" class="line" lang="plaintext"> simpleitk | 1 | {imaging-dev} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -233,7 +232,7 @@ Last-Update: Mon, 01 Jun 2020 01:42:03 +0000</td>
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232
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<pre style="margin: 0;"> <span id="LC232" class="line" lang="plaintext"> varscan | 1 | {covid-19,bio} | </span>
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233
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<pre style="margin: 0;"> <span id="LC233" class="line" lang="plaintext"> volpack | 1 | {imaging-dev} | </span>
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234
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<pre style="margin: 0;"> <span id="LC234" class="line" lang="plaintext"> wtdbg2 | 1 | {covid-19} | </span>
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<pre style="margin: 0;">-<span id="LC236" class="line" lang="plaintext"> augur | 0 | {<span class="idiff left right">covid-19,bio</span>} | </span>
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<pre style="margin: 0;">+<span id="LC235" class="line" lang="plaintext"> augur | 0 | {<span class="idiff left right">bio,covid-19</span>} | </span>
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<pre style="margin: 0;"> <span id="LC236" class="line" lang="plaintext"> bambamc | 0 | {bio-dev} | </span>
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237
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<pre style="margin: 0;"> <span id="LC237" class="line" lang="plaintext"> bbmap | 0 | {covid-19} | </span>
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238
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<pre style="margin: 0;"> <span id="LC238" class="line" lang="plaintext"> biojava4-live | 0 | {bio-dev} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -259,7 +258,7 @@ Last-Update: Mon, 01 Jun 2020 01:42:03 +0000</td>
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258
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<pre style="margin: 0;"> <span id="LC258" class="line" lang="plaintext"> libgenome | 0 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC259" class="line" lang="plaintext"> libgkarrays | 0 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC260" class="line" lang="plaintext"> libhmsbeagle | 0 | {bio-dev} | </span>
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<pre style="margin: 0;">-<span id="LC262" class="line" lang="plaintext"> libics | 0 | {<span class="idiff left right">imaging-dev,covid-19</span>} | </span>
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<pre style="margin: 0;">+<span id="LC261" class="line" lang="plaintext"> libics | 0 | {<span class="idiff left right">covid-19,imaging-dev</span>} | </span>
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<pre style="margin: 0;"> <span id="LC262" class="line" lang="plaintext"> libjloda-java | 0 | {bio-dev} | </span>
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263
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<pre style="margin: 0;"> <span id="LC263" class="line" lang="plaintext"> libmems | 0 | {bio-dev} | </span>
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264
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<pre style="margin: 0;"> <span id="LC264" class="line" lang="plaintext"> libmuscle | 0 | {bio-dev} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -274,7 +273,7 @@ Last-Update: Mon, 01 Jun 2020 01:42:03 +0000</td>
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273
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<pre style="margin: 0;"> <span id="LC273" class="line" lang="plaintext"> miaviewit | 0 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC274" class="line" lang="plaintext"> milib | 0 | {bio-dev,covid-19} | </span>
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<pre style="margin: 0;"> <span id="LC275" class="line" lang="plaintext"> mssstest | 0 | {tools} | </span>
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<pre style="margin: 0;">-<span id="LC277" class="line" lang="plaintext"> multiqc | 0 | {<span class="idiff left right">covid-19,bio</span>} | </span>
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<pre style="margin: 0;">+<span id="LC276" class="line" lang="plaintext"> multiqc | 0 | {<span class="idiff left right">bio,covid-19</span>} | </span>
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<pre style="margin: 0;"> <span id="LC277" class="line" lang="plaintext"> murasaki | 0 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC278" class="line" lang="plaintext"> ncbi-vdb | 0 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC279" class="line" lang="plaintext"> opencfu | 0 | {laboratory} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -284,19 +283,19 @@ Last-Update: Mon, 01 Jun 2020 01:42:03 +0000</td>
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<pre style="margin: 0;"> <span id="LC283" class="line" lang="plaintext"> pbseqlib | 0 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC284" class="line" lang="plaintext"> pilercr | 0 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC285" class="line" lang="plaintext"> pycoqc | 0 | {covid-19,bio} | </span>
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<pre style="margin: 0;">-<span id="LC287" class="line" lang="plaintext"> relion | 0 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC286" class="line" lang="plaintext"> relion | 0 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC287" class="line" lang="plaintext"> relion | 0 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC288" class="line" lang="plaintext"> sambamba | 0 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC289" class="line" lang="plaintext"> sbmltoolbox | 0 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC290" class="line" lang="plaintext"> seq-gen | 0 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC291" class="line" lang="plaintext"> skewer | 0 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC292" class="line" lang="plaintext"> smrtanalysis | 0 | {covid-19,bio} | </span>
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<pre style="margin: 0;"> <span id="LC293" class="line" lang="plaintext"> solvate | 0 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC295" class="line" lang="plaintext"> thesias | 0 | {<span class="idiff left right">covid-19,bio</span>} | </span>
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<pre style="margin: 0;">+<span id="LC294" class="line" lang="plaintext"> thesias | 0 | {<span class="idiff left right">bio,covid-19</span>} | </span>
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<pre style="margin: 0;"> <span id="LC295" class="line" lang="plaintext"> varna | 0 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC296" class="line" lang="plaintext"> vtk-dicom | 0 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC297" class="line" lang="plaintext"> bustools | -1 | {covid-19,bio} | </span>
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<pre style="margin: 0;">-<span id="LC299" class="line" lang="plaintext"> cat-bat | -1 | {<span class="idiff left right">bio,covid-19</span>} | </span>
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<pre style="margin: 0;">+<span id="LC298" class="line" lang="plaintext"> cat-bat | -1 | {<span class="idiff left right">covid-19,bio</span>} | </span>
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<pre style="margin: 0;"> <span id="LC299" class="line" lang="plaintext"> flash | -1 | {bio,covid-19} | </span>
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<pre style="margin: 0;">-<span id="LC301" class="line" lang="plaintext">(32<span class="idiff left right">5</span> rows)</span>
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<pre style="margin: 0;">+<span id="LC300" class="line" lang="plaintext">(32<span class="idiff left right">4</span> rows)</span>
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