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<h3>
Nilesh Patra pushed to branch master
at <a href="https://salsa.debian.org/med-team/libgff">Debian Med / libgff</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/libgff/-/commit/173e88ca8712d53c2c3ae594da2be4f005a5825b">173e88ca</a></strong>
<div>
<span>by Nilesh Patra</span>
<i>at 2020-06-02T22:32:47+05:30</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Add autopkgtests
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/libgff/-/commit/1ba845d847beeb63b1df3f3485b6679c8380577c">1ba845d8</a></strong>
<div>
<span>by Nilesh Patra</span>
<i>at 2020-06-02T22:33:01+05:30</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Install relevant examples
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/libgff/-/commit/95203892198e322b53d36141e07280f51ac29691">95203892</a></strong>
<div>
<span>by Nilesh Patra</span>
<i>at 2020-06-02T17:05:17+00:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Fix with cme
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/libgff/-/commit/ae20f328d4d3737f7eacd99b323f93ba14e06399">ae20f328</a></strong>
<div>
<span>by Nilesh Patra</span>
<i>at 2020-06-02T17:05:59+00:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Add upstream/metadata
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/libgff/-/commit/3410ac124e45e1b5a45e7ca6821b50900818a3a0">3410ac12</a></strong>
<div>
<span>by Nilesh Patra</span>
<i>at 2020-06-02T22:36:59+05:30</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Fix white space
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/libgff/-/commit/b9285521188196caa6e3e1b3e60b26e44085825b">b9285521</a></strong>
<div>
<span>by Nilesh Patra</span>
<i>at 2020-06-02T22:43:10+05:30</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Fix file permissions and trailing white spaces
</pre>
</li>
</ul>
<h4>10 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#78fd675df1cf8c2d4c62ae1a9a912d15c8c50ba4">
<span class="deleted-file">
−
debian/compat
</span>
</a>
</li>
<li class="file-stats">
<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
</a>
</li>
<li class="file-stats">
<a href="#adb7f75f79e3bb85eb62912a2904c5d24af878fb">
debian/copyright
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</li>
<li class="file-stats">
<a href="#9a14945e16c9144bd18a7ed182b1f8e4a2b50d7c">
<span class="new-file">
+
debian/examples
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</li>
<li class="file-stats">
<a href="#8756c63497c8dc39f7773438edf53b220c773f67">
debian/rules
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</li>
<li class="file-stats">
<a href="#14fea0078728545f6a156de7c63df9f8ed927ef8">
<span class="new-file">
+
debian/tests/README
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<li class="file-stats">
<a href="#83223a554d33ba7e1888274ff8ac43adb8147ba0">
<span class="new-file">
+
debian/tests/control
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</li>
<li class="file-stats">
<a href="#da6388fec572aa314031dca0fbd5c93e2641d64a">
<span class="new-file">
+
debian/tests/data/example.gtf
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<li class="file-stats">
<a href="#8c77cc51b09ef1f7b294222180bcdb53ebb70e2f">
<span class="new-file">
+
debian/tests/run-unit-test
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<li class="file-stats">
<a href="#f5606a935d95a2f20059a7ac1136f47b2edadbf6">
<span class="new-file">
+
debian/upstream/metadata
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</a>
</li>
</ul>
<h4>Changes:</h4>
<li id="78fd675df1cf8c2d4c62ae1a9a912d15c8c50ba4">
<a href="https://salsa.debian.org/med-team/libgff/-/compare/3713ee29b376aeb3440a6c85e8dbc65b5a8ba47e...b9285521188196caa6e3e1b3e60b26e44085825b#78fd675df1cf8c2d4c62ae1a9a912d15c8c50ba4"><strong>debian/compat</strong>
deleted
</a>
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<td class="diff-line-num old old_line" data-linenumber="1" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
1
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<td class="diff-line-num new_line old" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<td class="line_content old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">
<pre style="margin: 0;">-<span id="LC1" class="line" lang="plaintext">11</span></pre>
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<br>
</li>
<li id="58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
<a href="https://salsa.debian.org/med-team/libgff/-/compare/3713ee29b376aeb3440a6c85e8dbc65b5a8ba47e...b9285521188196caa6e3e1b3e60b26e44085825b#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2"><strong>debian/control</strong></a>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="3" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="3" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -3,12 +3,13 @@ Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.</td>
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<td class="diff-line-num new_line" data-linenumber="3" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext">Uploaders: Michael R. Crusoe <crusoe@ucdavis.edu></span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="4" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="diff-line-num new_line" data-linenumber="4" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext">Section: libdevel</span>
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<td class="diff-line-num old_line" data-linenumber="5" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="diff-line-num new_line" data-linenumber="5" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC5" class="line" lang="plaintext">Priority: optional</span>
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<td class="diff-line-num old old_line" data-linenumber="6" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<td class="diff-line-num new_line old" data-linenumber="6" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC6" class="line" lang="plaintext">Build-Depends: debhelper<span class="idiff left right"> (>= 11~</span>),</span>
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<td class="diff-line-num new old_line" data-linenumber="7" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="6" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext">Build-Depends: debhelper<span class="idiff left right">-compat (= 13</span>),</span>
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<td class="diff-line-num old_line" data-linenumber="7" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="diff-line-num new_line" data-linenumber="7" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC7" class="line" lang="plaintext"> cmake</span>
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<td class="diff-line-num old old_line" data-linenumber="8" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<td class="diff-line-num new_line old" data-linenumber="8" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<td class="line_content old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">
<pre style="margin: 0;">-<span id="LC8" class="line" lang="plaintext">Standards-Version: 4.<span class="idiff left right">1.4</span></span>
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<td class="diff-line-num new old_line" data-linenumber="9" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="8" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext">Standards-Version: 4.<span class="idiff left right">5.0</span></span>
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<td class="diff-line-num old_line" data-linenumber="9" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="diff-line-num new_line" data-linenumber="9" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC9" class="line" lang="plaintext">Vcs-Browser: https://salsa.debian.org/med-team/libgff</span>
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<td class="diff-line-num old_line" data-linenumber="10" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="diff-line-num new_line" data-linenumber="10" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC10" class="line" lang="plaintext">Vcs-Git: https://salsa.debian.org/med-team/libgff.git</span>
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<td class="diff-line-num old_line" data-linenumber="11" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="diff-line-num new_line" data-linenumber="11" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="plaintext">Homepage: https://github.com/Kingsford-Group/libgff</span>
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<td class="diff-line-num new old_line" data-linenumber="12" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="12" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="plaintext">Rules-Requires-Root: no</span>
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<td class="diff-line-num old_line" data-linenumber="12" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="diff-line-num new_line" data-linenumber="13" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC13" class="line" lang="plaintext"></span>
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<td class="diff-line-num old_line" data-linenumber="13" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
13
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<td class="diff-line-num new_line" data-linenumber="14" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC14" class="line" lang="plaintext">Package: libgff-dev</span>
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<td class="diff-line-num old_line" data-linenumber="14" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="diff-line-num new_line" data-linenumber="15" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC15" class="line" lang="plaintext">Architecture: any</span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="19" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="20" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -19,4 +20,4 @@ Description: GFF/GTF parsing from cufflinks as a library</td>
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<td class="diff-line-num old_line" data-linenumber="19" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="diff-line-num new_line" data-linenumber="20" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC20" class="line" lang="plaintext"> the Cufflinks codebase. There are not many (any?) relatively lightweight</span>
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<pre style="margin: 0;"> <span id="LC21" class="line" lang="plaintext"> GTF/GFF parsers exposing a C++ interface, and the goal of this library is to</span>
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<pre style="margin: 0;"> <span id="LC22" class="line" lang="plaintext"> provide this functionality without the necessity of drawing in a heavy-weight</span>
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<pre style="margin: 0;">-<span id="LC22" class="line" lang="plaintext"> dependency like SeqAn.<span class="idiff left right"> </span></span></pre>
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<pre style="margin: 0;">+<span id="LC23" class="line" lang="plaintext"> dependency like SeqAn.</span></pre>
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<a href="https://salsa.debian.org/med-team/libgff/-/compare/3713ee29b376aeb3440a6c85e8dbc65b5a8ba47e...b9285521188196caa6e3e1b3e60b26e44085825b#adb7f75f79e3bb85eb62912a2904c5d24af878fb"><strong>debian/copyright</strong></a>
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1
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="plaintext">Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/</span>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">Format: http<span class="idiff left right">s</span>://www.debian.org/doc/packaging-manuals/copyright-format/1.0/</span>
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="plaintext">Upstream-Name: libgff</span>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext">Source: https://github.com/Kingsford-Group/libgff</span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext"></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="34" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -34,5 +34,3 @@ License: BSL-1.0</td>
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<pre style="margin: 0;"> <span id="LC34" class="line" lang="plaintext"> FOR ANY DAMAGES OR OTHER LIABILITY, WHETHER IN CONTRACT, TORT OR OTHERWISE,</span>
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<pre style="margin: 0;"> <span id="LC35" class="line" lang="plaintext"> ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER</span>
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<pre style="margin: 0;"> <span id="LC36" class="line" lang="plaintext"> DEALINGS IN THE SOFTWARE.</span></pre>
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<pre style="margin: 0;">-<span id="LC37" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">-<span id="LC38" class="line" lang="plaintext"></span></pre>
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<a href="https://salsa.debian.org/med-team/libgff/-/compare/3713ee29b376aeb3440a6c85e8dbc65b5a8ba47e...b9285521188196caa6e3e1b3e60b26e44085825b#9a14945e16c9144bd18a7ed182b1f8e4a2b50d7c"><strong>debian/examples</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">src/TestGFFParse.cpp</span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="plaintext">debian/tests/data/*</span></pre>
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<a href="https://salsa.debian.org/med-team/libgff/-/compare/3713ee29b376aeb3440a6c85e8dbc65b5a8ba47e...b9285521188196caa6e3e1b3e60b26e44085825b#8756c63497c8dc39f7773438edf53b220c773f67"><strong>debian/rules</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -5,3 +5,6 @@</td>
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="plaintext">%:</span>
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="plaintext"> dh $@</span>
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext">override_dh_fixperms:</span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="plaintext"> dh_fixperms</span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="plaintext"> find debian -name '*.gtf' | xargs chmod -x</span></pre>
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<a href="https://salsa.debian.org/med-team/libgff/-/compare/3713ee29b376aeb3440a6c85e8dbc65b5a8ba47e...b9285521188196caa6e3e1b3e60b26e44085825b#14fea0078728545f6a156de7c63df9f8ed927ef8"><strong>debian/tests/README</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">Tests for libgff</span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="plaintext">=================</span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="plaintext">The debian/tests/data/* has been referenced from:</span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext"> https://www.icgeb.org/</span></pre>
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<a href="https://salsa.debian.org/med-team/libgff/-/compare/3713ee29b376aeb3440a6c85e8dbc65b5a8ba47e...b9285521188196caa6e3e1b3e60b26e44085825b#83223a554d33ba7e1888274ff8ac43adb8147ba0"><strong>debian/tests/control</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">Tests: run-unit-test</span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="plaintext">Depends: @, python-pysam-tests</span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext">Restrictions: allow-stderr</span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="plaintext"></span></pre>
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<a href="https://salsa.debian.org/med-team/libgff/-/compare/3713ee29b376aeb3440a6c85e8dbc65b5a8ba47e...b9285521188196caa6e3e1b3e60b26e44085825b#da6388fec572aa314031dca0fbd5c93e2641d64a"><strong>debian/tests/data/example.gtf</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">NC_000024.9 RefSeq gene 120310 122812 . + . gene_id "NC_000024.9:NCRNA00108"; gene_synonym "CXYorf11"; note "Derived by automated computational analysis using gene prediction method: Curated Genomic."; pseudo ""; db_xref "GeneID:677739"; db_xref "HGNC:31847";</span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="plaintext">NC_000024.9 RefSeq gene 142991 170020 . + . gene_id "NC_000024.9:PLCXD1"; note "Derived by automated computational analysis using gene prediction method: BestRefseq."; db_xref "GeneID:55344"; db_xref "HGNC:23148";</span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext">NC_000024.9 RefSeq exon 142991 143061 . + . gene_id "NC_000024.9:PLCXD1"; transcript_id "NM_018390.2"; gbkey "mRNA"; product "phosphatidylinositol-specific phospholipase C, X domain containing 1"; note "Derived by automated computational analysis using gene prediction method: BestRefseq."; insd_transcript_id "NM_018390.2"; db_xref "GeneID:55344"; db_xref "GI:94158612"; exon_number "1";</span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="plaintext">NC_000024.9 RefSeq exon 148149 148351 . + . gene_id "NC_000024.9:PLCXD1"; transcript_id "NM_018390.2"; gbkey "mRNA"; product "phosphatidylinositol-specific phospholipase C, X domain containing 1"; note "Derived by automated computational analysis using gene prediction method: BestRefseq."; insd_transcript_id "NM_018390.2"; db_xref "GeneID:55344"; db_xref "GI:94158612"; exon_number "2";</span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext">NC_000024.9 RefSeq exon 150834 150981 . + . gene_id "NC_000024.9:PLCXD1"; transcript_id "NM_018390.2"; gbkey "mRNA"; product "phosphatidylinositol-specific phospholipase C, X domain containing 1"; note "Derived by automated computational analysis using gene prediction method: BestRefseq."; insd_transcript_id "NM_018390.2"; db_xref "GeneID:55344"; db_xref "GI:94158612"; exon_number "3";</span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext">NC_000024.9 RefSeq exon 155400 155536 . + . gene_id "NC_000024.9:PLCXD1"; transcript_id "NM_018390.2"; gbkey "mRNA"; product "phosphatidylinositol-specific phospholipase C, X domain containing 1"; note "Derived by automated computational analysis using gene prediction method: BestRefseq."; insd_transcript_id "NM_018390.2"; db_xref "GeneID:55344"; db_xref "GI:94158612"; exon_number "4";</span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext">NC_000024.9 RefSeq exon 157315 157443 . + . gene_id "NC_000024.9:PLCXD1"; transcript_id "NM_018390.2"; gbkey "mRNA"; product "phosphatidylinositol-specific phospholipase C, X domain containing 1"; note "Derived by automated computational analysis using gene prediction method: BestRefseq."; insd_transcript_id "NM_018390.2"; db_xref "GeneID:55344"; db_xref "GI:94158612"; exon_number "5";</span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext">NC_000024.9 RefSeq exon 158166 158321 . + . gene_id "NC_000024.9:PLCXD1"; transcript_id "NM_018390.2"; gbkey "mRNA"; product "phosphatidylinositol-specific phospholipase C, X domain containing 1"; note "Derived by automated computational analysis using gene prediction method: BestRefseq."; insd_transcript_id "NM_018390.2"; db_xref "GeneID:55344"; db_xref "GI:94158612"; exon_number "6";</span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="plaintext">NC_000024.9 RefSeq exon 159702 159885 . + . gene_id "NC_000024.9:PLCXD1"; transcript_id "NM_018390.2"; gbkey "mRNA"; product "phosphatidylinositol-specific phospholipase C, X domain containing 1"; note "Derived by automated computational analysis using gene prediction method: BestRefseq."; insd_transcript_id "NM_018390.2"; db_xref "GeneID:55344"; db_xref "GI:94158612"; exon_number "7";</span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="plaintext">NC_000024.9 RefSeq exon 165764 166059 . + . gene_id "NC_000024.9:PLCXD1"; transcript_id "NM_018390.2"; gbkey "mRNA"; product "phosphatidylinositol-specific phospholipase C, X domain containing 1"; note "Derived by automated computational analysis using gene prediction method: BestRefseq."; insd_transcript_id "NM_018390.2"; db_xref "GeneID:55344"; db_xref "GI:94158612"; exon_number "8";</span>
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="plaintext">NC_000024.9 RefSeq exon 169260 170020 . + . gene_id "NC_000024.9:PLCXD1"; transcript_id "NM_018390.2"; gbkey "mRNA"; product "phosphatidylinositol-specific phospholipase C, X domain containing 1"; note "Derived by automated computational analysis using gene prediction method: BestRefseq."; insd_transcript_id "NM_018390.2"; db_xref "GeneID:55344"; db_xref "GI:94158612"; exon_number "9";</span>
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12
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="plaintext">NC_000024.9 RefSeq CDS 150855 150981 . + 0 gene_id "NC_000024.9:PLCXD1"; transcript_id "NM_018390.2"; note "Derived by automated computational analysis using gene prediction method: BestRefseq."; product "phosphatidylinositol-specific phospholipase C, X domain containing 1"; protein_id "NP_060860.1"; db_xref "CCDS:CCDS14103.1"; db_xref "GeneID:55344"; db_xref "GI:8922995"; exon_number "1";</span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="13" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
13
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="plaintext">NC_000024.9 RefSeq CDS 155400 155536 . + 2 gene_id "NC_000024.9:PLCXD1"; transcript_id "NM_018390.2"; note "Derived by automated computational analysis using gene prediction method: BestRefseq."; product "phosphatidylinositol-specific phospholipase C, X domain containing 1"; protein_id "NP_060860.1"; db_xref "CCDS:CCDS14103.1"; db_xref "GeneID:55344"; db_xref "GI:8922995"; exon_number "2";</span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="14" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
14
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="plaintext">NC_000024.9 RefSeq CDS 157315 157443 . + 0 gene_id "NC_000024.9:PLCXD1"; transcript_id "NM_018390.2"; note "Derived by automated computational analysis using gene prediction method: BestRefseq."; product "phosphatidylinositol-specific phospholipase C, X domain containing 1"; protein_id "NP_060860.1"; db_xref "CCDS:CCDS14103.1"; db_xref "GeneID:55344"; db_xref "GI:8922995"; exon_number "3";</span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="15" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
15
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="plaintext">NC_000024.9 RefSeq CDS 158166 158321 . + 0 gene_id "NC_000024.9:PLCXD1"; transcript_id "NM_018390.2"; note "Derived by automated computational analysis using gene prediction method: BestRefseq."; product "phosphatidylinositol-specific phospholipase C, X domain containing 1"; protein_id "NP_060860.1"; db_xref "CCDS:CCDS14103.1"; db_xref "GeneID:55344"; db_xref "GI:8922995"; exon_number "4";</span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="16" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
16
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="plaintext">NC_000024.9 RefSeq CDS 159702 159885 . + 0 gene_id "NC_000024.9:PLCXD1"; transcript_id "NM_018390.2"; note "Derived by automated computational analysis using gene prediction method: BestRefseq."; product "phosphatidylinositol-specific phospholipase C, X domain containing 1"; protein_id "NP_060860.1"; db_xref "CCDS:CCDS14103.1"; db_xref "GeneID:55344"; db_xref "GI:8922995"; exon_number "5";</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="17" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
17
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="plaintext">NC_000024.9 RefSeq CDS 165764 165999 . + 2 gene_id "NC_000024.9:PLCXD1"; transcript_id "NM_018390.2"; note "Derived by automated computational analysis using gene prediction method: BestRefseq."; product "phosphatidylinositol-specific phospholipase C, X domain containing 1"; protein_id "NP_060860.1"; db_xref "CCDS:CCDS14103.1"; db_xref "GeneID:55344"; db_xref "GI:8922995"; exon_number "6";</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="18" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
18
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<pre style="margin: 0;">+<span id="LC18" class="line" lang="plaintext">NC_000024.9 RefSeq start_codon 150855 150857 . + 0 gene_id "NC_000024.9:PLCXD1"; transcript_id "NM_018390.2"; note "Derived by automated computational analysis using gene prediction method: BestRefseq."; product "phosphatidylinositol-specific phospholipase C, X domain containing 1"; protein_id "NP_060860.1"; db_xref "CCDS:CCDS14103.1"; db_xref "GeneID:55344"; db_xref "GI:8922995"; exon_number "1";</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="19" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
19
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="plaintext">NC_000024.9 RefSeq stop_codon 166000 166002 . + 0 gene_id "NC_000024.9:PLCXD1"; transcript_id "NM_018390.2"; note "Derived by automated computational analysis using gene prediction method: BestRefseq."; product "phosphatidylinositol-specific phospholipase C, X domain containing 1"; protein_id "NP_060860.1"; db_xref "CCDS:CCDS14103.1"; db_xref "GeneID:55344"; db_xref "GI:8922995"; exon_number "1";</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="20" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
20
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<pre style="margin: 0;">+<span id="LC20" class="line" lang="plaintext">NC_000024.9 RefSeq gene 171426 180887 . - . gene_id "NC_000024.9:GTPBP6"; note "Derived by automated computational analysis using gene prediction method: BestRefseq."; db_xref "GeneID:8225"; db_xref "HGNC:30189"; db_xref "MIM:300124";</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="21" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
21
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<pre style="margin: 0;">+<span id="LC21" class="line" lang="plaintext">NC_000024.9 RefSeq exon 180817 180887 . - . gene_id "NC_000024.9:GTPBP6"; transcript_id "NM_012227.1"; gbkey "mRNA"; product "GTP binding protein 6 (putative)"; note "Derived by automated computational analysis using gene prediction method: BestRefseq."; exception "unclassified transcription discrepancy"; insd_transcript_id "NM_012227.1"; db_xref "GeneID:8225"; db_xref "GI:6912587"; exon_number "1";</span>
</pre>
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<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="22" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
22
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<pre style="margin: 0;">+<span id="LC22" class="line" lang="plaintext">NC_000024.9 RefSeq exon 179433 179591 . - . gene_id "NC_000024.9:GTPBP6"; transcript_id "NM_012227.1"; gbkey "mRNA"; product "GTP binding protein 6 (putative)"; note "Derived by automated computational analysis using gene prediction method: BestRefseq."; exception "unclassified transcription discrepancy"; insd_transcript_id "NM_012227.1"; db_xref "GeneID:8225"; db_xref "GI:6912587"; exon_number "2";</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="23" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
23
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<pre style="margin: 0;">+<span id="LC23" class="line" lang="plaintext">NC_000024.9 RefSeq exon 178086 178294 . - . gene_id "NC_000024.9:GTPBP6"; transcript_id "NM_012227.1"; gbkey "mRNA"; product "GTP binding protein 6 (putative)"; note "Derived by automated computational analysis using gene prediction method: BestRefseq."; exception "unclassified transcription discrepancy"; insd_transcript_id "NM_012227.1"; db_xref "GeneID:8225"; db_xref "GI:6912587"; exon_number "3";</span>
</pre>
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</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="24" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
24
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<pre style="margin: 0;">+<span id="LC24" class="line" lang="plaintext">NC_000024.9 RefSeq exon 174399 174547 . - . gene_id "NC_000024.9:GTPBP6"; transcript_id "NM_012227.1"; gbkey "mRNA"; product "GTP binding protein 6 (putative)"; note "Derived by automated computational analysis using gene prediction method: BestRefseq."; exception "unclassified transcription discrepancy"; insd_transcript_id "NM_012227.1"; db_xref "GeneID:8225"; db_xref "GI:6912587"; exon_number "4";</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="25" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
25
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<pre style="margin: 0;">+<span id="LC25" class="line" lang="plaintext">NC_000024.9 RefSeq exon 174027 174179 . - . gene_id "NC_000024.9:GTPBP6"; transcript_id "NM_012227.1"; gbkey "mRNA"; product "GTP binding protein 6 (putative)"; note "Derived by automated computational analysis using gene prediction method: BestRefseq."; exception "unclassified transcription discrepancy"; insd_transcript_id "NM_012227.1"; db_xref "GeneID:8225"; db_xref "GI:6912587"; exon_number "5";</span>
</pre>
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</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="26" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
26
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<pre style="margin: 0;">+<span id="LC26" class="line" lang="plaintext">NC_000024.9 RefSeq exon 171426 171864 . - . gene_id "NC_000024.9:GTPBP6"; transcript_id "NM_012227.1"; gbkey "mRNA"; product "GTP binding protein 6 (putative)"; note "Derived by automated computational analysis using gene prediction method: BestRefseq."; exception "unclassified transcription discrepancy"; insd_transcript_id "NM_012227.1"; db_xref "GeneID:8225"; db_xref "GI:6912587"; exon_number "6";</span>
</pre>
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</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="27" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
27
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<pre style="margin: 0;">+<span id="LC27" class="line" lang="plaintext">NC_000024.9 RefSeq CDS 180817 180887 . - 0 gene_id "NC_000024.9:GTPBP6"; transcript_id "NM_012227.1"; note "Derived by automated computational analysis using gene prediction method: BestRefseq."; exception "unclassified translation discrepancy"; product "pseudoautosomal GTP-binding protein-like protein"; protein_id "NP_036359.1"; db_xref "GeneID:8225"; db_xref "GI:6912588"; exon_number "1";</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="28" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
28
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<pre style="margin: 0;">+<span id="LC28" class="line" lang="plaintext">NC_000024.9 RefSeq CDS 179433 179591 . - 1 gene_id "NC_000024.9:GTPBP6"; transcript_id "NM_012227.1"; note "Derived by automated computational analysis using gene prediction method: BestRefseq."; exception "unclassified translation discrepancy"; product "pseudoautosomal GTP-binding protein-like protein"; protein_id "NP_036359.1"; db_xref "GeneID:8225"; db_xref "GI:6912588"; exon_number "2";</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="29" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
29
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<pre style="margin: 0;">+<span id="LC29" class="line" lang="plaintext">NC_000024.9 RefSeq CDS 178086 178294 . - 1 gene_id "NC_000024.9:GTPBP6"; transcript_id "NM_012227.1"; note "Derived by automated computational analysis using gene prediction method: BestRefseq."; exception "unclassified translation discrepancy"; product "pseudoautosomal GTP-binding protein-like protein"; protein_id "NP_036359.1"; db_xref "GeneID:8225"; db_xref "GI:6912588"; exon_number "3";</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="30" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
30
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<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC30" class="line" lang="plaintext">NC_000024.9 RefSeq CDS 174399 174547 . - 2 gene_id "NC_000024.9:GTPBP6"; transcript_id "NM_012227.1"; note "Derived by automated computational analysis using gene prediction method: BestRefseq."; exception "unclassified translation discrepancy"; product "pseudoautosomal GTP-binding protein-like protein"; protein_id "NP_036359.1"; db_xref "GeneID:8225"; db_xref "GI:6912588"; exon_number "4";</span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="31" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC31" class="line" lang="plaintext">NC_000024.9 RefSeq CDS 174027 174179 . - 0 gene_id "NC_000024.9:GTPBP6"; transcript_id "NM_012227.1"; note "Derived by automated computational analysis using gene prediction method: BestRefseq."; exception "unclassified translation discrepancy"; product "pseudoautosomal GTP-binding protein-like protein"; protein_id "NP_036359.1"; db_xref "GeneID:8225"; db_xref "GI:6912588"; exon_number "5";</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="32" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
32
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<pre style="margin: 0;">+<span id="LC32" class="line" lang="plaintext">NC_000024.9 RefSeq CDS 171741 171864 . - 0 gene_id "NC_000024.9:GTPBP6"; transcript_id "NM_012227.1"; note "Derived by automated computational analysis using gene prediction method: BestRefseq."; exception "unclassified translation discrepancy"; product "pseudoautosomal GTP-binding protein-like protein"; protein_id "NP_036359.1"; db_xref "GeneID:8225"; db_xref "GI:6912588"; exon_number "6";</span>
</pre>
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<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="33" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
33
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<pre style="margin: 0;">+<span id="LC33" class="line" lang="plaintext">NC_000024.9 RefSeq gene 231385 232067 . + . gene_id "NC_000024.9:NCRNA00107"; partial ""; note "Derived by automated computational analysis using gene prediction method: BestRefseq."; db_xref "GeneID:283981"; db_xref "HGNC:27560";</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="34" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
34
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<pre style="margin: 0;">+<span id="LC34" class="line" lang="plaintext">NC_000024.9 RefSeq exon 231385 232067 . + . gene_id "NC_000024.9:NCRNA00107"; transcript_id "NR_027232.1"; gbkey "misc_RNA"; product "non-protein coding RNA 107, transcript variant 1"; note "Derived by automated computational analysis using gene prediction method: BestRefseq."; db_xref "GeneID:283981"; exon_number "1";</span>
</pre>
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</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="35" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
35
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<pre style="margin: 0;">+<span id="LC35" class="line" lang="plaintext">NC_000024.9 RefSeq exon 231385 232067 . + . gene_id "NC_000024.9:NCRNA00107"; transcript_id "NR_027231.1"; gbkey "misc_RNA"; product "non-protein coding RNA 107, transcript variant 2"; note "Derived by automated computational analysis using gene prediction method: BestRefseq."; db_xref "GeneID:283981"; exon_number "1";</span>
</pre>
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</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="36" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
36
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<pre style="margin: 0;">+<span id="LC36" class="line" lang="plaintext">NC_000024.9 RefSeq gene 244970 297627 . - . gene_id "NC_000024.9:PPP2R3B"; partial ""; note "Derived by automated computational analysis using gene prediction method: BestRefseq."; db_xref "GeneID:28227"; db_xref "HGNC:13417"; db_xref "MIM:300339";</span>
</pre>
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<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="37" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
37
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<pre style="margin: 0;">+<span id="LC37" class="line" lang="plaintext">NC_000024.9 RefSeq exon 297103 297627 . - . gene_id "NC_000024.9:PPP2R3B"; transcript_id "NM_013239.3"; gbkey "mRNA"; partial ""; product "protein phosphatase 2 (formerly 2A), regulatory subunit B\'\', beta, transcript variant 1"; note "Derived by automated computational analysis using gene prediction method: BestRefseq."; insd_transcript_id "NM_013239.3"; db_xref "GeneID:28227"; db_xref "GI:41349492"; exon_number "1";</span>
</pre>
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<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="38" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
38
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<pre style="margin: 0;">+<span id="LC38" class="line" lang="plaintext">NC_000024.9 RefSeq exon 272140 272325 . - . gene_id "NC_000024.9:PPP2R3B"; transcript_id "NM_013239.3"; gbkey "mRNA"; partial ""; product "protein phosphatase 2 (formerly 2A), regulatory subunit B\'\', beta, transcript variant 1"; note "Derived by automated computational analysis using gene prediction method: BestRefseq."; insd_transcript_id "NM_013239.3"; db_xref "GeneID:28227"; db_xref "GI:41349492"; exon_number "2";</span>
</pre>
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<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="39" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
39
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<pre style="margin: 0;">+<span id="LC39" class="line" lang="plaintext">NC_000024.9 RefSeq exon 258325 258428 . - . gene_id "NC_000024.9:PPP2R3B"; transcript_id "NM_013239.3"; gbkey "mRNA"; partial ""; product "protein phosphatase 2 (formerly 2A), regulatory subunit B\'\', beta, transcript variant 1"; note "Derived by automated computational analysis using gene prediction method: BestRefseq."; insd_transcript_id "NM_013239.3"; db_xref "GeneID:28227"; db_xref "GI:41349492"; exon_number "3";</span>
</pre>
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<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="40" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
40
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<pre style="margin: 0;">+<span id="LC40" class="line" lang="plaintext">NC_000024.9 RefSeq exon 257969 258071 . - . gene_id "NC_000024.9:PPP2R3B"; transcript_id "NM_013239.3"; gbkey "mRNA"; partial ""; product "protein phosphatase 2 (formerly 2A), regulatory subunit B\'\', beta, transcript variant 1"; note "Derived by automated computational analysis using gene prediction method: BestRefseq."; insd_transcript_id "NM_013239.3"; db_xref "GeneID:28227"; db_xref "GI:41349492"; exon_number "4";</span>
</pre>
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<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="41" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
41
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<pre style="margin: 0;">+<span id="LC41" class="line" lang="plaintext">NC_000024.9 RefSeq exon 257436 257510 . - . gene_id "NC_000024.9:PPP2R3B"; transcript_id "NM_013239.3"; gbkey "mRNA"; partial ""; product "protein phosphatase 2 (formerly 2A), regulatory subunit B\'\', beta, transcript variant 1"; note "Derived by automated computational analysis using gene prediction method: BestRefseq."; insd_transcript_id "NM_013239.3"; db_xref "GeneID:28227"; db_xref "GI:41349492"; exon_number "5";</span>
</pre>
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</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="42" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
42
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<pre style="margin: 0;">+<span id="LC42" class="line" lang="plaintext">NC_000024.9 RefSeq exon 256909 256995 . - . gene_id "NC_000024.9:PPP2R3B"; transcript_id "NM_013239.3"; gbkey "mRNA"; partial ""; product "protein phosphatase 2 (formerly 2A), regulatory subunit B\'\', beta, transcript variant 1"; note "Derived by automated computational analysis using gene prediction method: BestRefseq."; insd_transcript_id "NM_013239.3"; db_xref "GeneID:28227"; db_xref "GI:41349492"; exon_number "6";</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="43" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
43
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<pre style="margin: 0;">+<span id="LC43" class="line" lang="plaintext">NC_000024.9 RefSeq exon 256251 256407 . - . gene_id "NC_000024.9:PPP2R3B"; transcript_id "NM_013239.3"; gbkey "mRNA"; partial ""; product "protein phosphatase 2 (formerly 2A), regulatory subunit B\'\', beta, transcript variant 1"; note "Derived by automated computational analysis using gene prediction method: BestRefseq."; insd_transcript_id "NM_013239.3"; db_xref "GeneID:28227"; db_xref "GI:41349492"; exon_number "7";</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="44" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
44
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<pre style="margin: 0;">+<span id="LC44" class="line" lang="plaintext">NC_000024.9 RefSeq exon 252618 252666 . - . gene_id "NC_000024.9:PPP2R3B"; transcript_id "NM_013239.3"; gbkey "mRNA"; partial ""; product "protein phosphatase 2 (formerly 2A), regulatory subunit B\'\', beta, transcript variant 1"; note "Derived by automated computational analysis using gene prediction method: BestRefseq."; insd_transcript_id "NM_013239.3"; db_xref "GeneID:28227"; db_xref "GI:41349492"; exon_number "8";</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="45" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
45
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<pre style="margin: 0;">+<span id="LC45" class="line" lang="plaintext">NC_000024.9 RefSeq exon 252042 252131 . - . gene_id "NC_000024.9:PPP2R3B"; transcript_id "NM_013239.3"; gbkey "mRNA"; partial ""; product "protein phosphatase 2 (formerly 2A), regulatory subunit B\'\', beta, transcript variant 1"; note "Derived by automated computational analysis using gene prediction method: BestRefseq."; insd_transcript_id "NM_013239.3"; db_xref "GeneID:28227"; db_xref "GI:41349492"; exon_number "9";</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="46" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
46
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<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC46" class="line" lang="plaintext">NC_000024.9 RefSeq exon 251500 251675 . - . gene_id "NC_000024.9:PPP2R3B"; transcript_id "NM_013239.3"; gbkey "mRNA"; partial ""; product "protein phosphatase 2 (formerly 2A), regulatory subunit B\'\', beta, transcript variant 1"; note "Derived by automated computational analysis using gene prediction method: BestRefseq."; insd_transcript_id "NM_013239.3"; db_xref "GeneID:28227"; db_xref "GI:41349492"; exon_number "10";</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="47" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
47
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<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC47" class="line" lang="plaintext">NC_000024.9 RefSeq exon 249513 249631 . - . gene_id "NC_000024.9:PPP2R3B"; transcript_id "NM_013239.3"; gbkey "mRNA"; partial ""; product "protein phosphatase 2 (formerly 2A), regulatory subunit B\'\', beta, transcript variant 1"; note "Derived by automated computational analysis using gene prediction method: BestRefseq."; insd_transcript_id "NM_013239.3"; db_xref "GeneID:28227"; db_xref "GI:41349492"; exon_number "11";</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="48" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
48
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<pre style="margin: 0;">+<span id="LC48" class="line" lang="plaintext">NC_000024.9 RefSeq exon 249339 249445 . - . gene_id "NC_000024.9:PPP2R3B"; transcript_id "NM_013239.3"; gbkey "mRNA"; partial ""; product "protein phosphatase 2 (formerly 2A), regulatory subunit B\'\', beta, transcript variant 1"; note "Derived by automated computational analysis using gene prediction method: BestRefseq."; insd_transcript_id "NM_013239.3"; db_xref "GeneID:28227"; db_xref "GI:41349492"; exon_number "12";</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="49" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
49
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<pre style="margin: 0;">+<span id="LC49" class="line" lang="plaintext">NC_000024.9 RefSeq exon 244970 245252 . - . gene_id "NC_000024.9:PPP2R3B"; transcript_id "NM_013239.3"; gbkey "mRNA"; partial ""; product "protein phosphatase 2 (formerly 2A), regulatory subunit B\'\', beta, transcript variant 1"; note "Derived by automated computational analysis using gene prediction method: BestRefseq."; insd_transcript_id "NM_013239.3"; db_xref "GeneID:28227"; db_xref "GI:41349492"; exon_number "13";</span>
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<pre style="margin: 0;">+<span id="LC50" class="line" lang="plaintext">NC_000024.9 RefSeq exon 252042 252590 . - . gene_id "NC_000024.9:PPP2R3B"; transcript_id "NM_199326.1"; gbkey "mRNA"; partial ""; product "protein phosphatase 2 (formerly 2A), regulatory subunit B\'\', beta, transcript variant 2"; note "Derived by automated computational analysis using gene prediction method: BestRefseq."; insd_transcript_id "NM_199326.1"; db_xref "GeneID:28227"; db_xref "GI:41349490"; exon_number "1";</span>
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51
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<pre style="margin: 0;">+<span id="LC51" class="line" lang="plaintext">NC_000024.9 RefSeq exon 251500 251675 . - . gene_id "NC_000024.9:PPP2R3B"; transcript_id "NM_199326.1"; gbkey "mRNA"; partial ""; product "protein phosphatase 2 (formerly 2A), regulatory subunit B\'\', beta, transcript variant 2"; note "Derived by automated computational analysis using gene prediction method: BestRefseq."; insd_transcript_id "NM_199326.1"; db_xref "GeneID:28227"; db_xref "GI:41349490"; exon_number "2";</span>
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<pre style="margin: 0;">+<span id="LC52" class="line" lang="plaintext">NC_000024.9 RefSeq exon 249513 249631 . - . gene_id "NC_000024.9:PPP2R3B"; transcript_id "NM_199326.1"; gbkey "mRNA"; partial ""; product "protein phosphatase 2 (formerly 2A), regulatory subunit B\'\', beta, transcript variant 2"; note "Derived by automated computational analysis using gene prediction method: BestRefseq."; insd_transcript_id "NM_199326.1"; db_xref "GeneID:28227"; db_xref "GI:41349490"; exon_number "3";</span></pre>
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<li id="8c77cc51b09ef1f7b294222180bcdb53ebb70e2f">
<a href="https://salsa.debian.org/med-team/libgff/-/compare/3713ee29b376aeb3440a6c85e8dbc65b5a8ba47e...b9285521188196caa6e3e1b3e60b26e44085825b#8c77cc51b09ef1f7b294222180bcdb53ebb70e2f"><strong>debian/tests/run-unit-test</strong></a>
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1
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="shell"><span class="c" style="color: #998; font-style: italic;">#!/bin/bash</span></span>
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2
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="shell"><span class="nb" style="color: #0086b3;">set</span> <span class="nt" style="color: #000080;">-e</span></span>
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3
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="shell"></span>
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4
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="shell"><span class="nv" style="color: #008080;">pkg</span><span class="o" style="font-weight: 600;">=</span>libgff-dev</span>
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5
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="shell"></span>
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6
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="shell"><span class="k" style="font-weight: 600;">if</span> <span class="o" style="font-weight: 600;">[</span> <span class="s2" style="color: #d14;">"</span><span class="k" style="font-weight: 600;">${</span><span class="nv" style="color: #008080;">AUTOPKGTEST_TMP</span><span class="k" style="font-weight: 600;">}</span><span class="s2" style="color: #d14;">"</span> <span class="o" style="font-weight: 600;">=</span> <span class="s2" style="color: #d14;">""</span> <span class="o" style="font-weight: 600;">]</span> <span class="p">;</span> <span class="k" style="font-weight: 600;">then</span></span>
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7
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="shell"><span class="k" style="font-weight: 600;"> </span><span class="nv" style="color: #008080;">AUTOPKGTEST_TMP</span><span class="o" style="font-weight: 600;">=</span><span class="si" style="color: #d14;">$(</span><span class="nb" style="color: #0086b3;">mktemp</span> <span class="nt" style="color: #000080;">-d</span> /tmp/<span class="k" style="font-weight: 600;">${</span><span class="nv" style="color: #008080;">pkg</span><span class="k" style="font-weight: 600;">}</span><span class="nt" style="color: #000080;">-test</span>.XXXXXX<span class="si" style="color: #d14;">)</span></span>
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8
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="shell"> <span class="nb" style="color: #0086b3;">trap</span> <span class="s2" style="color: #d14;">"rm -rf </span><span class="k" style="font-weight: 600;">${</span><span class="nv" style="color: #008080;">AUTOPKGTEST_TMP</span><span class="k" style="font-weight: 600;">}</span><span class="s2" style="color: #d14;">"</span> 0 INT QUIT ABRT PIPE TERM</span>
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9
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="shell"><span class="k" style="font-weight: 600;">fi</span></span>
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10
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="shell"></span>
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11
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="shell"><span class="nb" style="color: #0086b3;">cp</span> /usr/share/doc/<span class="k" style="font-weight: 600;">${</span><span class="nv" style="color: #008080;">pkg</span><span class="k" style="font-weight: 600;">}</span>/examples/<span class="k" style="font-weight: 600;">*</span> <span class="nt" style="color: #000080;">-a</span> <span class="s2" style="color: #d14;">"</span><span class="k" style="font-weight: 600;">${</span><span class="nv" style="color: #008080;">AUTOPKGTEST_TMP</span><span class="k" style="font-weight: 600;">}</span><span class="s2" style="color: #d14;">"</span></span>
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12
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="shell"><span class="nb" style="color: #0086b3;">cp</span> /usr/share/doc/python-pysam/tests/pysam_data/test.gtf <span class="nt" style="color: #000080;">-a</span> <span class="s2" style="color: #d14;">"</span><span class="k" style="font-weight: 600;">${</span><span class="nv" style="color: #008080;">AUTOPKGTEST_TMP</span><span class="k" style="font-weight: 600;">}</span><span class="s2" style="color: #d14;">"</span></span>
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13
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="shell"></span>
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14
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="shell"><span class="nb" style="color: #0086b3;">cd</span> <span class="s2" style="color: #d14;">"</span><span class="k" style="font-weight: 600;">${</span><span class="nv" style="color: #008080;">AUTOPKGTEST_TMP</span><span class="k" style="font-weight: 600;">}</span><span class="s2" style="color: #d14;">"</span></span>
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15
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="shell"><span class="nb" style="color: #0086b3;">gunzip</span> <span class="nt" style="color: #000080;">-r</span> <span class="k" style="font-weight: 600;">*</span></span>
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16
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="shell"></span>
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17
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="shell"><span class="nb" style="color: #0086b3;">echo</span> <span class="s1" style="color: #d14;">'Compiling ...'</span></span>
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<pre style="margin: 0;">+<span id="LC18" class="line" lang="shell">g++ TestGFFParse.cpp <span class="nt" style="color: #000080;">-lgff</span> <span class="nt" style="color: #000080;">-Wall</span> <span class="nt" style="color: #000080;">-o</span> testlib</span>
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19
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="shell"><span class="nb" style="color: #0086b3;">echo</span> <span class="s1" style="color: #d14;">'------------------------------'</span></span>
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20
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<pre style="margin: 0;">+<span id="LC20" class="line" lang="shell"><span class="nb" style="color: #0086b3;">echo</span></span>
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21
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<pre style="margin: 0;">+<span id="LC21" class="line" lang="shell"></span>
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22
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<pre style="margin: 0;">+<span id="LC22" class="line" lang="shell"><span class="nb" style="color: #0086b3;">echo</span> <span class="s1" style="color: #d14;">'Test 1'</span></span>
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23
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<pre style="margin: 0;">+<span id="LC23" class="line" lang="shell">./testlib test.gtf</span>
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24
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<pre style="margin: 0;">+<span id="LC24" class="line" lang="shell"><span class="nb" style="color: #0086b3;">echo</span> <span class="s1" style="color: #d14;">'PASS'</span></span>
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25
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<pre style="margin: 0;">+<span id="LC25" class="line" lang="shell"><span class="nb" style="color: #0086b3;">echo</span> <span class="s1" style="color: #d14;">'-------------------------------'</span></span>
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26
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<pre style="margin: 0;">+<span id="LC26" class="line" lang="shell"></span>
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27
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<pre style="margin: 0;">+<span id="LC27" class="line" lang="shell"><span class="nb" style="color: #0086b3;">echo</span> <span class="s1" style="color: #d14;">'Test 2'</span></span>
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28
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<pre style="margin: 0;">+<span id="LC28" class="line" lang="shell">./testlib example.gtf</span>
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29
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<pre style="margin: 0;">+<span id="LC29" class="line" lang="shell"><span class="nb" style="color: #0086b3;">echo</span> <span class="s1" style="color: #d14;">'PASS'</span></span>
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30
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<pre style="margin: 0;">+<span id="LC30" class="line" lang="shell"><span class="nb" style="color: #0086b3;">echo</span> <span class="s1" style="color: #d14;">'-------------------------------'</span></span></pre>
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<a href="https://salsa.debian.org/med-team/libgff/-/compare/3713ee29b376aeb3440a6c85e8dbc65b5a8ba47e...b9285521188196caa6e3e1b3e60b26e44085825b#f5606a935d95a2f20059a7ac1136f47b2edadbf6"><strong>debian/upstream/metadata</strong></a>
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1
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">---</span>
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2
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="plaintext">Archive: GitHub</span>
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3
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext">Bug-Database: https://github.com/Kingsford-Group/libgff/issues</span>
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4
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="plaintext">Bug-Submit: https://github.com/Kingsford-Group/libgff/issues/new</span>
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5
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext">Changelog: https://github.com/Kingsford-Group/libgff/tags</span>
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6
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext">Repository: https://github.com/Kingsford-Group/libgff.git</span>
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7
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext">Repository-Browse: https://github.com/Kingsford-Group/libgff</span></pre>
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