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<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/med-team/diamond-aligner">Debian Med / diamond-aligner</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/diamond-aligner/-/commit/eb8320a75fb97072175fc755962b88eb870d14db">eb8320a7</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-06-02T10:25:50+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: New upstream version
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/diamond-aligner/-/commit/7f2f7c8ddaf6e3d49054d15ff71302eb11dea3f6">7f2f7c8d</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-06-02T10:25:51+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 0.9.33</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/diamond-aligner/-/commit/c4d55a65602c7d304ac5efeeca049b512bf5ae5e">c4d55a65</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-06-02T10:25:53+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Update upstream source from tag 'upstream/0.9.33'
Update to upstream version '0.9.33'
with Debian dir b8e0f39246bb7990530a357549e2db1f7e30ec2e</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/diamond-aligner/-/commit/66ce27bb14efe0b1523a3a3629c5f30edf1c7033">66ce27bb</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-06-02T10:25:54+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: debhelper-compat 13
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/diamond-aligner/-/commit/bc30725e650c1e61bd3152a7b645b4747f44f66c">bc30725e</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-06-02T10:40:24+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Deactivate patches applied upstream
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/diamond-aligner/-/commit/00c1d865d7273547e0b7f89516720b0b9ab25e1d">00c1d865</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-06-02T10:54:53+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Upstream applied all patches
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/diamond-aligner/-/commit/0efad89da76f8507f82f32998f81457b6fa260c6">0efad89d</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-06-02T11:05:46+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Upstream confirmed that the new version has solved the build issues
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/diamond-aligner/-/commit/ba94854844318fb8982320cb5ce59368ac199615">ba948548</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-06-02T11:08:23+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Upload to unstable
</pre>
</li>
</ul>
<h4>30 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#dea01dd89a3b602828e630677fde5d77c06441c8">
.travis.yml
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</li>
<li class="file-stats">
<a href="#9a2aa4db38d3115ed60da621e012c0efc0172aae">
CMakeLists.txt
</a>
</li>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
</a>
</li>
<li class="file-stats">
<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
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<li class="file-stats">
<a href="#84c3518864033ac71f83a5371bb659ebf76d0164">
<span class="deleted-file">
−
debian/patches/63b3e686f41272851a87c632441ba8c6484a2fe2.patch
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<li class="file-stats">
<a href="#7504edb146624613085f847641b8908c861bf3ee">
<span class="deleted-file">
−
debian/patches/82feea2aee5c82e283704b9317cb5e8abc625f90.patch
</span>
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<li class="file-stats">
<a href="#7bc0e26ef5164c80b650f8f0fa1eb62ae7d0707d">
<span class="deleted-file">
−
debian/patches/avoid_unwanted_optimisation.patch
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</li>
<li class="file-stats">
<a href="#7eeed8553b6a575efdf8a4ca5f7897236a178e14">
<span class="deleted-file">
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debian/patches/f5daf92d3ece50ebb0c0a5f9b4133769347ec55b.patch
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<li class="file-stats">
<a href="#bc34014ab4b9a49dd7a27bdd8d352912607c3a96">
<span class="deleted-file">
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debian/patches/series
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</li>
<li class="file-stats">
<a href="#ba308c53c268704c3008f5e2e6e8129f9f6bf3fe">
src/ChangeLog
</a>
</li>
<li class="file-stats">
<a href="#f76380e3e66f9453de89e5ac198478544cf1e6e4">
src/align/align.cpp
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<li class="file-stats">
<a href="#5a2381540b8362260dcaa6747086bb358097256e">
src/align/extend.cpp
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<li class="file-stats">
<a href="#98a808eabbbc11da533eb019b5faf5950c4104ba">
src/align/gapped.cpp
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</li>
<li class="file-stats">
<a href="#b18faac0ee01a4af7eb1b183c49e78e698af5c15">
src/align/gapped_filter.cpp
</a>
</li>
<li class="file-stats">
<a href="#8f9453cefaa66bad075c8bcb49a08b740b24e222">
src/align/legacy/banded_swipe_pipeline.cpp
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</li>
<li class="file-stats">
<a href="#79b081d050ff058cc4444df01970041d95b03792">
src/align/legacy/query_mapper.cpp
</a>
</li>
<li class="file-stats">
<a href="#28524a0ac5e69e8f46d523d7d08fb7bec288edf3">
src/align/legacy/query_mapper.h
</a>
</li>
<li class="file-stats">
<a href="#76d5a97c09cca591280144de40f9c04a5ec57ef7">
src/basic/basic.cpp
</a>
</li>
<li class="file-stats">
<a href="#fe8c534c15ea9cf93547993244c3ab903c4895ff">
src/basic/config.cpp
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</li>
<li class="file-stats">
<a href="#79a175a8b141cc4f06683108fcd39b79a555f1cd">
src/basic/config.h
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</li>
<li class="file-stats">
<a href="#da280a51d91809345347036c4e31920b2c744ab7">
src/basic/const.h
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<li class="file-stats">
<a href="#992408bab41b605763e629e7a719178aef609bae">
src/basic/masking.cpp
</a>
</li>
<li class="file-stats">
<a href="#e64142605ff8612313a434ebbb47a669146a4d86">
src/basic/masking.h
</a>
</li>
<li class="file-stats">
<a href="#f9492756ecc3a6486c8d8a74972ab3c60ae604a2">
src/basic/match.h
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</li>
<li class="file-stats">
<a href="#0ede537afea69d82dc188cfda9284c8a6625754f">
src/basic/packed_loc.h
</a>
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<li class="file-stats">
<a href="#3acb533977ddcbc123b4fc5fa6a1f7d171564189">
src/basic/reduction.h
</a>
</li>
<li class="file-stats">
<a href="#c37d770cc180a4c51d177941b1090e906642b4fe">
src/basic/score_matrix.cpp
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</li>
<li class="file-stats">
<a href="#15796a835f775e458ca2e977883e5a15f7eb14ae">
src/basic/score_matrix.h
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</li>
<li class="file-stats">
<a href="#9cdd6e619760f59a971d25b80727732f834f4813">
src/basic/sequence.h
</a>
</li>
<li class="file-stats">
<a href="#eeb9c797e717eb3e4f468bca3e84923ae3c9a8db">
src/basic/shape.h
</a>
</li>
</ul>
<h5>The diff was not included because it is too large.</h5>
</div>
<div class="footer" style="margin-top: 10px;">
<p style="font-size: small; color: #777;">
—
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<a href="https://salsa.debian.org/med-team/diamond-aligner/-/compare/ad29343aa47e7412653265cdb6fab9a613053dec...ba94854844318fb8982320cb5ce59368ac199615">View it on GitLab</a>.
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