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<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/med-team/community/helper-scripts">Debian Med / community / helper-scripts</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/community/helper-scripts/-/commit/74a53e2e90b44a99b62defb6e26820eb531f2ba9">74a53e2e</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-06-03T13:45:58+00:00</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">automatic update
</pre>
</li>
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<h4>2 changed files:</h4>
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<li class="file-stats">
<a href="#f6d55d24085decec06151dd27f30199089d856ca">
debian-med-tests.txt
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<li class="file-stats">
<a href="#2654e31016bcee9bbe05d462121706cc8ed368af">
outdated_med-packages.txt
</a>
</li>
</ul>
<h4>Changes:</h4>
<li id="f6d55d24085decec06151dd27f30199089d856ca">
<a href="https://salsa.debian.org/med-team/community/helper-scripts/-/commit/74a53e2e90b44a99b62defb6e26820eb531f2ba9#f6d55d24085decec06151dd27f30199089d856ca"><strong>debian-med-tests.txt</strong></a>
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="plaintext">Last-Update: Wed, 03 Jun 2020 <span class="idiff left right">01:42:04</span> +0000</span>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">Last-Update: Wed, 03 Jun 2020 <span class="idiff left right">13:42:03</span> +0000</span>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext"> Source | Vote | Tasks | Tags </span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext">-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------</span>
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<pre style="margin: 0;">-<span id="LC5" class="line" lang="plaintext"> dcmtk | 19<span class="idiff left right">2</span> | {covid-19,imaging} | </span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext"> dcmtk | 19<span class="idiff left right">1</span> | {covid-19,imaging} | </span>
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="plaintext"> orthanc | 95 | {imaging,covid-19,practice} | </span>
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="plaintext"> gdcm | 56 | {imaging-dev} | </span>
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<pre style="margin: 0;">-<span id="LC8" class="line" lang="plaintext"> orthanc-wsi | 4<span class="idiff left right">5</span> | {imaging,laboratory,practice,covid-19,his,oncology} | </span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext"> orthanc-wsi | 4<span class="idiff left right">4</span> | {imaging,laboratory,practice,covid-19,his,oncology} | </span>
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="plaintext"> htsjdk | 33 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="plaintext"> dicom3tools | 30 | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC11" class="line" lang="plaintext"> dcm2niix | 2<span class="idiff left right">8</span> | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="plaintext"> dcm2niix | 2<span class="idiff left right">9</span> | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC12" class="line" lang="plaintext"> dicomscope | 28 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC13" class="line" lang="plaintext"> gdcm | 19 | {covid-19,imaging} | </span>
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<td class="diff-line-num old_line" data-linenumber="14" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC14" class="line" lang="plaintext"> minc-tools | 18 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC15" class="line" lang="plaintext"> gnumed-server | 17 | {covid-19,practice} | </span>
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<pre style="margin: 0;">-<span id="LC16" class="line" lang="plaintext"> insighttoolkit4 | 1<span class="idiff left right">6</span> | {imaging-dev} | </span>
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="plaintext"> insighttoolkit4 | 1<span class="idiff left right">7</span> | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC17" class="line" lang="plaintext"> invesalius | 15 | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC18" class="line" lang="plaintext"> <span class="idiff left right">pixelmed | 14 | {imaging</span>} | </span>
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<pre style="margin: 0;">+<span id="LC18" class="line" lang="plaintext"> <span class="idiff left right">ngs-sdk | 14 | {bio-dev</span>} | </span>
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<pre style="margin: 0;"> <span id="LC19" class="line" lang="plaintext"> plastimatch | 14 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC20" class="line" lang="plaintext"> vtk-dicom | 14 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC21" class="line" lang="plaintext"> gdcm | 13 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC22" class="line" lang="plaintext"> king | 13 | {imaging,typesetting} | </span>
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<pre style="margin: 0;">-<span id="LC23" class="line" lang="plaintext"> <span class="idiff left right">ngs-sdk | 13 | {bio-dev</span>} | </span>
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<pre style="margin: 0;">+<span id="LC23" class="line" lang="plaintext"> <span class="idiff left right">pixelmed | 13 | {imaging</span>} | </span>
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<pre style="margin: 0;"> <span id="LC24" class="line" lang="plaintext"> stacks | 13 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC25" class="line" lang="plaintext"> adun.app | 12 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC26" class="line" lang="plaintext"> openslide | 12 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC27" class="line" lang="plaintext"> biosig4c++ | 11 | {physics,imaging} | </span>
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<pre style="margin: 0;"> <span id="LC28" class="line" lang="plaintext"> obitools | 11 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC29" class="line" lang="plaintext"> librg-utils-perl | 10 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC29" class="line" lang="plaintext"> biojava-live | 9 | {bio-dev} | </span>
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<pre style="margin: 0;">-<span id="LC31" class="line" lang="plaintext"> <span class="idiff left right">psychopy | 9 | {psychology}</span> | </span>
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<pre style="margin: 0;">+<span id="LC30" class="line" lang="plaintext"> <span class="idiff left right">librg-utils-perl | 9 | {bio} </span> | </span>
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<pre style="margin: 0;"> <span id="LC31" class="line" lang="plaintext"> radiant | 9 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC32" class="line" lang="plaintext"> ea-utils | 8 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC33" class="line" lang="plaintext"> ecopcr | 8 | {bio} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -36,9 +35,11 @@ Last-Update: Wed, 03 Jun 2020 01:42:04 +0000</td>
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<pre style="margin: 0;"> <span id="LC35" class="line" lang="plaintext"> jebl2 | 8 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC36" class="line" lang="plaintext"> mipe | 8 | {bio,cloud} | </span>
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<pre style="margin: 0;"> <span id="LC37" class="line" lang="plaintext"> ncbi-seg | 8 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC38" class="line" lang="plaintext"> ngs-sdk | 8 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC39" class="line" lang="plaintext"> norsp | 8 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC40" class="line" lang="plaintext"> p<span class="idiff left right">iler | 8 | {bio} </span> | </span>
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<pre style="margin: 0;">+<span id="LC40" class="line" lang="plaintext"> p<span class="idiff left right">sychopy | 8 | {psychology}</span> | </span>
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<pre style="margin: 0;"> <span id="LC41" class="line" lang="plaintext"> sibsim4 | 8 | {cloud,bio} | </span>
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<pre style="margin: 0;">+<span id="LC42" class="line" lang="plaintext"> staden | 8 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC43" class="line" lang="plaintext"> alter-sequence-alignment | 7 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC44" class="line" lang="plaintext"> ampliconnoise | 7 | {bio,cloud} | </span>
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<pre style="margin: 0;"> <span id="LC45" class="line" lang="plaintext"> arden | 7 | {cloud,bio} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -50,12 +51,11 @@ Last-Update: Wed, 03 Jun 2020 01:42:04 +0000</td>
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<pre style="margin: 0;"> <span id="LC51" class="line" lang="plaintext"> indelible | 7 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC52" class="line" lang="plaintext"> maqview | 7 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC53" class="line" lang="plaintext"> melting | 7 | {bio,cloud} | </span>
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<pre style="margin: 0;">-<span id="LC53" class="line" lang="plaintext"> ngs-sdk | 7 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC54" class="line" lang="plaintext"> orthanc-webviewer | 7 | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC55" class="line" lang="plaintext"> piler | 7 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC56" class="line" lang="plaintext"> pymia | 7 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC57" class="line" lang="plaintext"> sickle | 7 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC58" class="line" lang="plaintext"> sigma-align | 7 | {bio-phylogeny,bio,cloud} | </span>
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<pre style="margin: 0;">-<span id="LC58" class="line" lang="plaintext"> staden | 7 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC59" class="line" lang="plaintext"> abacas | 6 | {bio,covid-19} | </span>
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<pre style="margin: 0;"> <span id="LC60" class="line" lang="plaintext"> anfo | 6 | {cloud,bio} | </span>
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<pre style="margin: 0;"> <span id="LC61" class="line" lang="plaintext"> beads | 6 | {bio} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -69,6 +69,7 @@ Last-Update: Wed, 03 Jun 2020 01:42:04 +0000</td>
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<pre style="margin: 0;"> <span id="LC69" class="line" lang="plaintext"> embassy-domalign | 6 | {cloud,bio} | </span>
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<pre style="margin: 0;"> <span id="LC70" class="line" lang="plaintext"> gatb-core | 6 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC71" class="line" lang="plaintext"> king-probe | 6 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC72" class="line" lang="plaintext"> libminc | 6 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC73" class="line" lang="plaintext"> mapsembler2 | 6 | {bio,cloud} | </span>
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<pre style="margin: 0;"> <span id="LC74" class="line" lang="plaintext"> mrs | 6 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC75" class="line" lang="plaintext"> neobio | 6 | {cloud,bio} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -83,13 +84,13 @@ Last-Update: Wed, 03 Jun 2020 01:42:04 +0000</td>
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<pre style="margin: 0;"> <span id="LC84" class="line" lang="plaintext"> pscan-tfbs | 6 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC85" class="line" lang="plaintext"> rtax | 6 | {bio,cloud} | </span>
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<pre style="margin: 0;"> <span id="LC86" class="line" lang="plaintext"> saint | 6 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC86" class="line" lang="plaintext"> seer | 6 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC87" class="line" lang="plaintext"> seqtools | 6 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC88" class="line" lang="plaintext"> snap-aligner | 6 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC89" class="line" lang="plaintext"> soapsnp | 6 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC90" class="line" lang="plaintext"> squizz | 6 | {cloud,bio} | </span>
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<pre style="margin: 0;"> <span id="LC91" class="line" lang="plaintext"> transtermhp | 6 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC92" class="line" lang="plaintext"> treeview | 6 | {bio,bio-phylogeny} | </span>
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<pre style="margin: 0;">+<span id="LC93" class="line" lang="plaintext"> vsearch | 6 | {bio,covid-19} | </span>
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<pre style="margin: 0;"> <span id="LC94" class="line" lang="plaintext"> zalign | 6 | {bio,cloud} | </span>
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<pre style="margin: 0;"> <span id="LC95" class="line" lang="plaintext"> assemblytics | 5 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC96" class="line" lang="plaintext"> baitfisher | 5 | {bio} | </span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="110" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -110,7 +111,6 @@ Last-Update: Wed, 03 Jun 2020 01:42:04 +0000</td>
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<pre style="margin: 0;"> <span id="LC111" class="line" lang="plaintext"> ipig | 5 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC112" class="line" lang="plaintext"> jellyfish1 | 5 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC113" class="line" lang="plaintext"> lagan | 5 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC113" class="line" lang="plaintext"> libminc | 5 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC114" class="line" lang="plaintext"> libncl | 5 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC115" class="line" lang="plaintext"> microbegps | 5 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC116" class="line" lang="plaintext"> mlv-smile | 5 | {cloud,bio} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -133,7 +133,6 @@ Last-Update: Wed, 03 Jun 2020 01:42:04 +0000</td>
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<pre style="margin: 0;"> <span id="LC133" class="line" lang="plaintext"> sga | 5 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC134" class="line" lang="plaintext"> spread-phy | 5 | {bio,bio-phylogeny} | </span>
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135
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<pre style="margin: 0;"> <span id="LC135" class="line" lang="plaintext"> tracetuner | 5 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC136" class="line" lang="plaintext"> vsearch | 5 | {bio,covid-19} | </span>
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<pre style="margin: 0;"> <span id="LC136" class="line" lang="plaintext"> yaha | 5 | {bio} | </span>
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138
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137
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<pre style="margin: 0;"> <span id="LC137" class="line" lang="plaintext"> bart-view | 4 | {imaging} | </span>
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139
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138
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<pre style="margin: 0;"> <span id="LC138" class="line" lang="plaintext"> canu | 4 | {bio} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -194,12 +193,10 @@ Last-Update: Wed, 03 Jun 2020 01:42:04 +0000</td>
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193
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<pre style="margin: 0;"> <span id="LC193" class="line" lang="plaintext"> blimps | 2 | {bio} | </span>
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194
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<pre style="margin: 0;"> <span id="LC194" class="line" lang="plaintext"> busco | 2 | {covid-19,bio} | </span>
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195
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<pre style="margin: 0;"> <span id="LC195" class="line" lang="plaintext"> emboss-explorer | 2 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC197" class="line" lang="plaintext"> kma | 2 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC196" class="line" lang="plaintext"> libbio-mage-utils-perl | 2 | {bio-dev} | </span>
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197
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<pre style="margin: 0;"> <span id="LC197" class="line" lang="plaintext"> libsbml | 2 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC198" class="line" lang="plaintext"> mencal | 2 | {tools} | </span>
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199
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<pre style="margin: 0;"> <span id="LC199" class="line" lang="plaintext"> ngs-sdk | 2 | {bio-dev} | </span>
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<pre style="margin: 0;">-<span id="LC202" class="line" lang="plaintext"> oscar | 2 | {practice,data,tools} | </span>
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<pre style="margin: 0;"> <span id="LC200" class="line" lang="plaintext"> papyrus | 2 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC201" class="line" lang="plaintext"> relion | 2 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC202" class="line" lang="plaintext"> sift | 2 | {bio} | </span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="209" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -209,15 +206,16 @@ Last-Update: Wed, 03 Jun 2020 01:42:04 +0000</td>
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<pre style="margin: 0;"> <span id="LC206" class="line" lang="plaintext"> ctn | 1 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC207" class="line" lang="plaintext"> embassy-phylip | 1 | {cloud,bio} | </span>
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<pre style="margin: 0;"> <span id="LC208" class="line" lang="plaintext"> gatb-core | 1 | {bio-dev} | </span>
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<pre style="margin: 0;">+<span id="LC209" class="line" lang="plaintext"> kma | 1 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC210" class="line" lang="plaintext"> kmerresistance | 1 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC211" class="line" lang="plaintext"> libchado-perl | 1 | {bio-dev} | </span>
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212
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<pre style="margin: 0;"> <span id="LC212" class="line" lang="plaintext"> libctapimkt | 1 | {practice} | </span>
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215
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<pre style="margin: 0;">-<span id="LC215" class="line" lang="plaintext"> libgff | 1 | {bio-dev} | </span>
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216
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213
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<pre style="margin: 0;"> <span id="LC213" class="line" lang="plaintext"> libmialm | 1 | {imaging-dev} | </span>
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217
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214
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<pre style="margin: 0;"> <span id="LC214" class="line" lang="plaintext"> libvistaio | 1 | {imaging-dev} | </span>
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218
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215
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<pre style="margin: 0;"> <span id="LC215" class="line" lang="plaintext"> libxdf | 1 | {imaging-dev} | </span>
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219
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216
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<pre style="margin: 0;"> <span id="LC216" class="line" lang="plaintext"> murasaki | 1 | {bio} | </span>
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217
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<pre style="margin: 0;"> <span id="LC217" class="line" lang="plaintext"> opensurgsim | 1 | {imaging-dev} | </span>
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<td class="diff-line-num new old_line" data-linenumber="221" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC218" class="line" lang="plaintext"> oscar | 1 | {practice,data,tools} | </span>
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<pre style="margin: 0;"> <span id="LC219" class="line" lang="plaintext"> python-py2bit | 1 | {bio,bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC220" class="line" lang="plaintext"> python-scitrack | 1 | {covid-19} | </span>
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<pre style="margin: 0;"> <span id="LC221" class="line" lang="plaintext"> relion | 1 | {bio} | </span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="296" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="294" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -296,5 +294,5 @@ Last-Update: Wed, 03 Jun 2020 01:42:04 +0000</td>
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<pre style="margin: 0;"> <span id="LC294" class="line" lang="plaintext"> bustools | -1 | {covid-19,bio} | </span>
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<pre style="margin: 0;"> <span id="LC295" class="line" lang="plaintext"> cat-bat | -1 | {covid-19,bio} | </span>
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<pre style="margin: 0;"> <span id="LC296" class="line" lang="plaintext"> flash | -1 | {bio,covid-19} | </span>
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<pre style="margin: 0;">-<span id="LC299" class="line" lang="plaintext">(32<span class="idiff left right">3</span> rows)</span>
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<pre style="margin: 0;">+<span id="LC297" class="line" lang="plaintext">(32<span class="idiff left right">1</span> rows)</span>
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<pre style="margin: 0;"> <span id="LC298" class="line" lang="plaintext"></span></pre>
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