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<h3>

Andreas Tille pushed to branch master

at <a href="https://salsa.debian.org/med-team/diamond-aligner">Debian Med / diamond-aligner</a>

</h3>

<h4>

Commits:

</h4>

<ul>

<li>

<strong><a href="https://salsa.debian.org/med-team/diamond-aligner/-/commit/ec27f76348b4aaf195a9cc78bd09ca5b017ba3ba">ec27f763</a></strong>

<div>

<span>by Andreas Tille</span>

<i>at 2020-06-03T18:46:31+02:00</i>

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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Run test suite verbosely (no --quiet option)

</pre>

</li>

</ul>

<h4>2 changed files:</h4>

<ul>

<li class="file-stats">

<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">

debian/changelog

</a>

</li>

<li class="file-stats">

<a href="#14fc952ed8399b8e1644b6ad1b48dc722c37fdb3">

debian/tests/diamond-calls

</a>

</li>

</ul>

<h4>Changes:</h4>

<li id="9c96da0e9f91d7d8937b69b524702c106258f0d1">

<a href="https://salsa.debian.org/med-team/diamond-aligner/-/commit/ec27f76348b4aaf195a9cc78bd09ca5b017ba3ba#9c96da0e9f91d7d8937b69b524702c106258f0d1"><strong>debian/changelog</strong></a>

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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">diamond-aligner (0.9.33-2) UNRELEASED; urgency=medium</span>

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<pre style="margin: 0;">+<span id="LC2" class="line" lang="plaintext"></span>

</pre>

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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext">  * Run test suite verbosely (no --quiet option)</span>

</pre>

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<pre style="margin: 0;">+<span id="LC4" class="line" lang="plaintext"></span>

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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext"> -- Andreas Tille <tille@debian.org>  Wed, 03 Jun 2020 18:46:00 +0200</span>

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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext"></span>

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<pre style="margin: 0;"> <span id="LC7" class="line" lang="plaintext">diamond-aligner (0.9.33-1) unstable; urgency=medium</span>

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<pre style="margin: 0;"> <span id="LC8" class="line" lang="plaintext"></span>

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<pre style="margin: 0;"> <span id="LC9" class="line" lang="plaintext">  * New upstream version</span>

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<br>

</li>

<li id="14fc952ed8399b8e1644b6ad1b48dc722c37fdb3">

<a href="https://salsa.debian.org/med-team/diamond-aligner/-/commit/ec27f76348b4aaf195a9cc78bd09ca5b017ba3ba#14fc952ed8399b8e1644b6ad1b48dc722c37fdb3"><strong>debian/tests/diamond-calls</strong></a>

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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="6" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>

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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -6,43 +6,43 @@ set -x</td>

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<pre style="margin: 0;"> <span id="LC6" class="line" lang="shell"><span class="nv" style="color: #008080;">TESTDIR</span><span class="o" style="font-weight: 600;">=</span><span class="sb" style="color: #d14;">`</span><span class="nb" style="color: #0086b3;">mktemp</span> <span class="nt" style="color: #000080;">-d</span><span class="sb" style="color: #d14;">`</span></span>

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<pre style="margin: 0;"> <span id="LC7" class="line" lang="shell"></span>

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<pre style="margin: 0;"> <span id="LC8" class="line" lang="shell"><span class="c" style="color: #998; font-style: italic;">#TODO: 10 DONE: 0 Running: 4 -> 14</span></span>

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<pre style="margin: 0;">-<span id="LC9" class="line" lang="shell">diamond blastp <span class="nt" style="color: #000080;">--threads</span> 1 <span class="nt" style="color: #000080;">--db</span> <span class="s1" style="color: #d14;">'test/C.faa.diamond'</span> <span class="nt" style="color: #000080;">--query</span> <span class="s1" style="color: #d14;">'test/E.faa'</span> <span class="nt" style="color: #000080;">--out</span> <span class="nv" style="color: #008080;">$TESTDIR</span>/E.faa.vs.C.faa.diamond <span class="nt" style="color: #000080;">-e</span> 1e-05 <span class="nt" style="color: #000080;">--outfmt</span> 6 <span class="nt" style="color: #000080;">--<span class="idiff left">quiet</span></span><span class="idiff">  </span><span class="nt" style="color: #000080;"><span class="idiff right">--</span>sensitive</span> 2>/dev/null</span>

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<pre style="margin: 0;">-<span id="LC10" class="line" lang="shell">diamond blastp <span class="nt" style="color: #000080;">--threads</span> 1 <span class="nt" style="color: #000080;">--db</span> <span class="s1" style="color: #d14;">'test/E.faa.diamond'</span> <span class="nt" style="color: #000080;">--query</span> <span class="s1" style="color: #d14;">'test/C.faa'</span> <span class="nt" style="color: #000080;">--out</span> <span class="nv" style="color: #008080;">$TESTDIR</span>/C.faa.vs.E.faa.diamond <span class="nt" style="color: #000080;">-e</span> 1e-05 <span class="nt" style="color: #000080;">--outfmt</span> 6 <span class="nt" style="color: #000080;">--<span class="idiff left">quiet</span></span><span class="idiff">  </span><span class="nt" style="color: #000080;"><span class="idiff right">--</span>sensitive</span> 2>/dev/null</span>

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<pre style="margin: 0;">+<span id="LC9" class="line" lang="shell">diamond blastp <span class="nt" style="color: #000080;">--threads</span> 1 <span class="nt" style="color: #000080;">--db</span> <span class="s1" style="color: #d14;">'test/C.faa.diamond'</span> <span class="nt" style="color: #000080;">--query</span> <span class="s1" style="color: #d14;">'test/E.faa'</span> <span class="nt" style="color: #000080;">--out</span> <span class="nv" style="color: #008080;">$TESTDIR</span>/E.faa.vs.C.faa.diamond <span class="nt" style="color: #000080;">-e</span> 1e-05 <span class="nt" style="color: #000080;">--outfmt</span> 6 <span class="nt" style="color: #000080;">--sensitive</span> 2>/dev/null</span>

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<td class="diff-line-num new new_line" data-linenumber="10" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

10

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<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">

<pre style="margin: 0;">+<span id="LC10" class="line" lang="shell">diamond blastp <span class="nt" style="color: #000080;">--threads</span> 1 <span class="nt" style="color: #000080;">--db</span> <span class="s1" style="color: #d14;">'test/E.faa.diamond'</span> <span class="nt" style="color: #000080;">--query</span> <span class="s1" style="color: #d14;">'test/C.faa'</span> <span class="nt" style="color: #000080;">--out</span> <span class="nv" style="color: #008080;">$TESTDIR</span>/C.faa.vs.E.faa.diamond <span class="nt" style="color: #000080;">-e</span> 1e-05 <span class="nt" style="color: #000080;">--outfmt</span> 6 <span class="nt" style="color: #000080;">--sensitive</span> 2>/dev/null</span>

</pre>

</td>

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<tr class="line_holder" id="" style="line-height: 1.6;">

<td class="diff-line-num old_line" data-linenumber="11" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

11

</td>

<td class="diff-line-num new_line" data-linenumber="11" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

11

</td>

<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">

<pre style="margin: 0;"> <span id="LC11" class="line" lang="shell"></span>

</pre>

</td>

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<tr class="line_holder" id="" style="line-height: 1.6;">

<td class="diff-line-num old_line" data-linenumber="12" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

12

</td>

<td class="diff-line-num new_line" data-linenumber="12" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

12

</td>

<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">

<pre style="margin: 0;"> <span id="LC12" class="line" lang="shell"><span class="c" style="color: #998; font-style: italic;">#TODO: 10 DONE: 1 Running: 3 -> 12</span></span>

</pre>

</td>

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<tr class="line_holder old" id="" style="line-height: 1.6;">

<td class="diff-line-num old old_line" data-linenumber="13" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

13

</td>

<td class="diff-line-num new_line old" data-linenumber="13" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

</td>

<td class="line_content old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">

<pre style="margin: 0;">-<span id="LC13" class="line" lang="shell">diamond blastp <span class="nt" style="color: #000080;">--threads</span> 1 <span class="nt" style="color: #000080;">--db</span> <span class="s1" style="color: #d14;">'test/C.faa.diamond'</span> <span class="nt" style="color: #000080;">--query</span> <span class="s1" style="color: #d14;">'test/L.faa'</span> <span class="nt" style="color: #000080;">--out</span> <span class="nv" style="color: #008080;">$TESTDIR</span>/L.faa.vs.C.faa.diamond <span class="nt" style="color: #000080;">-e</span> 1e-05 <span class="nt" style="color: #000080;">--outfmt</span> 6 <span class="nt" style="color: #000080;">--<span class="idiff left">quiet</span></span><span class="idiff">  </span><span class="nt" style="color: #000080;"><span class="idiff right">--</span>sensitive</span> 2>/dev/null</span>

</pre>

</td>

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<tr class="line_holder old" id="" style="line-height: 1.6;">

<td class="diff-line-num old old_line" data-linenumber="14" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

14

</td>

<td class="diff-line-num new_line old" data-linenumber="13" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

</td>

<td class="line_content old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">

<pre style="margin: 0;">-<span id="LC14" class="line" lang="shell">diamond blastp <span class="nt" style="color: #000080;">--threads</span> 1 <span class="nt" style="color: #000080;">--db</span> <span class="s1" style="color: #d14;">'test/L.faa.diamond'</span> <span class="nt" style="color: #000080;">--query</span> <span class="s1" style="color: #d14;">'test/C.faa'</span> <span class="nt" style="color: #000080;">--out</span> <span class="nv" style="color: #008080;">$TESTDIR</span>/C.faa.vs.L.faa.diamond <span class="nt" style="color: #000080;">-e</span> 1e-05 <span class="nt" style="color: #000080;">--outfmt</span> 6 <span class="nt" style="color: #000080;">--<span class="idiff left">quiet</span></span><span class="idiff">  </span><span class="nt" style="color: #000080;"><span class="idiff right">--</span>sensitive</span> 2>/dev/null</span>

</pre>

</td>

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<tr class="line_holder new" id="" style="line-height: 1.6;">

<td class="diff-line-num new old_line" data-linenumber="15" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

</td>

<td class="diff-line-num new new_line" data-linenumber="13" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

13

</td>

<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">

<pre style="margin: 0;">+<span id="LC13" class="line" lang="shell">diamond blastp <span class="nt" style="color: #000080;">--threads</span> 1 <span class="nt" style="color: #000080;">--db</span> <span class="s1" style="color: #d14;">'test/C.faa.diamond'</span> <span class="nt" style="color: #000080;">--query</span> <span class="s1" style="color: #d14;">'test/L.faa'</span> <span class="nt" style="color: #000080;">--out</span> <span class="nv" style="color: #008080;">$TESTDIR</span>/L.faa.vs.C.faa.diamond <span class="nt" style="color: #000080;">-e</span> 1e-05 <span class="nt" style="color: #000080;">--outfmt</span> 6 <span class="nt" style="color: #000080;">--sensitive</span> 2>/dev/null</span>

</pre>

</td>

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<tr class="line_holder new" id="" style="line-height: 1.6;">

<td class="diff-line-num new old_line" data-linenumber="15" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

</td>

<td class="diff-line-num new new_line" data-linenumber="14" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

14

</td>

<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">

<pre style="margin: 0;">+<span id="LC14" class="line" lang="shell">diamond blastp <span class="nt" style="color: #000080;">--threads</span> 1 <span class="nt" style="color: #000080;">--db</span> <span class="s1" style="color: #d14;">'test/L.faa.diamond'</span> <span class="nt" style="color: #000080;">--query</span> <span class="s1" style="color: #d14;">'test/C.faa'</span> <span class="nt" style="color: #000080;">--out</span> <span class="nv" style="color: #008080;">$TESTDIR</span>/C.faa.vs.L.faa.diamond <span class="nt" style="color: #000080;">-e</span> 1e-05 <span class="nt" style="color: #000080;">--outfmt</span> 6 <span class="nt" style="color: #000080;">--sensitive</span> 2>/dev/null</span>

</pre>

</td>

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<tr class="line_holder" id="" style="line-height: 1.6;">

<td class="diff-line-num old_line" data-linenumber="15" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

15

</td>

<td class="diff-line-num new_line" data-linenumber="15" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

15

</td>

<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">

<pre style="margin: 0;"> <span id="LC15" class="line" lang="shell"></span>

</pre>

</td>

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<tr class="line_holder" id="" style="line-height: 1.6;">

<td class="diff-line-num old_line" data-linenumber="16" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

16

</td>

<td class="diff-line-num new_line" data-linenumber="16" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

16

</td>

<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">

<pre style="margin: 0;"> <span id="LC16" class="line" lang="shell"><span class="c" style="color: #998; font-style: italic;">#TODO: 10 DONE: 1 Running: 3 -> 12</span></span>

</pre>

</td>

</tr>

<tr class="line_holder old" id="" style="line-height: 1.6;">

<td class="diff-line-num old old_line" data-linenumber="17" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

17

</td>

<td class="diff-line-num new_line old" data-linenumber="17" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

</td>

<td class="line_content old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">

<pre style="margin: 0;">-<span id="LC17" class="line" lang="shell">diamond blastp <span class="nt" style="color: #000080;">--threads</span> 1 <span class="nt" style="color: #000080;">--db</span> <span class="s1" style="color: #d14;">'test/C.faa.diamond'</span> <span class="nt" style="color: #000080;">--query</span> <span class="s1" style="color: #d14;">'test/M.faa'</span> <span class="nt" style="color: #000080;">--out</span> <span class="nv" style="color: #008080;">$TESTDIR</span>/M.faa.vs.C.faa.diamond <span class="nt" style="color: #000080;">-e</span> 1e-05 <span class="nt" style="color: #000080;">--outfmt</span> 6 <span class="nt" style="color: #000080;">--<span class="idiff left">quiet</span></span><span class="idiff">  </span><span class="nt" style="color: #000080;"><span class="idiff right">--</span>sensitive</span> 2>/dev/null</span>

</pre>

</td>

</tr>

<tr class="line_holder new" id="" style="line-height: 1.6;">

<td class="diff-line-num new old_line" data-linenumber="18" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

</td>

<td class="diff-line-num new new_line" data-linenumber="17" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

17

</td>

<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">

<pre style="margin: 0;">+<span id="LC17" class="line" lang="shell">diamond blastp <span class="nt" style="color: #000080;">--threads</span> 1 <span class="nt" style="color: #000080;">--db</span> <span class="s1" style="color: #d14;">'test/C.faa.diamond'</span> <span class="nt" style="color: #000080;">--query</span> <span class="s1" style="color: #d14;">'test/M.faa'</span> <span class="nt" style="color: #000080;">--out</span> <span class="nv" style="color: #008080;">$TESTDIR</span>/M.faa.vs.C.faa.diamond <span class="nt" style="color: #000080;">-e</span> 1e-05 <span class="nt" style="color: #000080;">--outfmt</span> 6 <span class="nt" style="color: #000080;">--sensitive</span> 2>/dev/null</span>

</pre>

</td>

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<tr class="line_holder" id="" style="line-height: 1.6;">

<td class="diff-line-num old_line" data-linenumber="18" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

18

</td>

<td class="diff-line-num new_line" data-linenumber="18" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

18

</td>

<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">

<pre style="margin: 0;"> <span id="LC18" class="line" lang="shell"></span>

</pre>

</td>

</tr>

<tr class="line_holder" id="" style="line-height: 1.6;">

<td class="diff-line-num old_line" data-linenumber="19" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

19

</td>

<td class="diff-line-num new_line" data-linenumber="19" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

19

</td>

<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">

<pre style="margin: 0;"> <span id="LC19" class="line" lang="shell"><span class="c" style="color: #998; font-style: italic;"># TODO: 10 DONE: 1 Running: 3 -> 12</span></span>

</pre>

</td>

</tr>

<tr class="line_holder old" id="" style="line-height: 1.6;">

<td class="diff-line-num old old_line" data-linenumber="20" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

20

</td>

<td class="diff-line-num new_line old" data-linenumber="20" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

</td>

<td class="line_content old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">

<pre style="margin: 0;">-<span id="LC20" class="line" lang="shell">diamond blastp <span class="nt" style="color: #000080;">--threads</span> 1 <span class="nt" style="color: #000080;">--db</span> <span class="s1" style="color: #d14;">'test/C.faa.diamond'</span> <span class="nt" style="color: #000080;">--query</span> <span class="s1" style="color: #d14;">'test/C2.faa'</span> <span class="nt" style="color: #000080;">--out</span> <span class="nv" style="color: #008080;">$TESTDIR</span>/C2.faa.vs.C.faa.diamond <span class="nt" style="color: #000080;">-e</span> 1e-05 <span class="nt" style="color: #000080;">--outfmt</span> 6 <span class="nt" style="color: #000080;">--<span class="idiff left">quiet</span></span><span class="idiff">  </span><span class="nt" style="color: #000080;"><span class="idiff right">--</span>sensitive</span> 2>/dev/null</span>

</pre>

</td>

</tr>

<tr class="line_holder new" id="" style="line-height: 1.6;">

<td class="diff-line-num new old_line" data-linenumber="21" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

</td>

<td class="diff-line-num new new_line" data-linenumber="20" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

20

</td>

<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">

<pre style="margin: 0;">+<span id="LC20" class="line" lang="shell">diamond blastp <span class="nt" style="color: #000080;">--threads</span> 1 <span class="nt" style="color: #000080;">--db</span> <span class="s1" style="color: #d14;">'test/C.faa.diamond'</span> <span class="nt" style="color: #000080;">--query</span> <span class="s1" style="color: #d14;">'test/C2.faa'</span> <span class="nt" style="color: #000080;">--out</span> <span class="nv" style="color: #008080;">$TESTDIR</span>/C2.faa.vs.C.faa.diamond <span class="nt" style="color: #000080;">-e</span> 1e-05 <span class="nt" style="color: #000080;">--outfmt</span> 6 <span class="nt" style="color: #000080;">--sensitive</span> 2>/dev/null</span>

</pre>

</td>

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<td class="diff-line-num old_line" data-linenumber="21" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

21

</td>

<td class="diff-line-num new_line" data-linenumber="21" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

21

</td>

<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">

<pre style="margin: 0;"> <span id="LC21" class="line" lang="shell"></span>

</pre>

</td>

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<tr class="line_holder" id="" style="line-height: 1.6;">

<td class="diff-line-num old_line" data-linenumber="22" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

22

</td>

<td class="diff-line-num new_line" data-linenumber="22" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

22

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<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">

<pre style="margin: 0;"> <span id="LC22" class="line" lang="shell"><span class="c" style="color: #998; font-style: italic;"># TODO: 10 DONE: 1 Running: 3 -> 12</span></span>

</pre>

</td>

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<tr class="line_holder old" id="" style="line-height: 1.6;">

<td class="diff-line-num old old_line" data-linenumber="23" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

23

</td>

<td class="diff-line-num new_line old" data-linenumber="23" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

</td>

<td class="line_content old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">

<pre style="margin: 0;">-<span id="LC23" class="line" lang="shell">diamond blastp <span class="nt" style="color: #000080;">--threads</span> 1 <span class="nt" style="color: #000080;">--db</span> <span class="s1" style="color: #d14;">'test/E.faa.diamond'</span> <span class="nt" style="color: #000080;">--query</span> <span class="s1" style="color: #d14;">'test/L.faa'</span> <span class="nt" style="color: #000080;">--out</span> <span class="nv" style="color: #008080;">$TESTDIR</span>/L.faa.vs.E.faa.diamond <span class="nt" style="color: #000080;">-e</span> 1e-05 <span class="nt" style="color: #000080;">--outfmt</span> 6 <span class="nt" style="color: #000080;">--<span class="idiff left">quiet</span></span><span class="idiff">  </span><span class="nt" style="color: #000080;"><span class="idiff right">--</span>sensitive</span> 2>/dev/null</span>

</pre>

</td>

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<tr class="line_holder new" id="" style="line-height: 1.6;">

<td class="diff-line-num new old_line" data-linenumber="24" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

</td>

<td class="diff-line-num new new_line" data-linenumber="23" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

23

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<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">

<pre style="margin: 0;">+<span id="LC23" class="line" lang="shell">diamond blastp <span class="nt" style="color: #000080;">--threads</span> 1 <span class="nt" style="color: #000080;">--db</span> <span class="s1" style="color: #d14;">'test/E.faa.diamond'</span> <span class="nt" style="color: #000080;">--query</span> <span class="s1" style="color: #d14;">'test/L.faa'</span> <span class="nt" style="color: #000080;">--out</span> <span class="nv" style="color: #008080;">$TESTDIR</span>/L.faa.vs.E.faa.diamond <span class="nt" style="color: #000080;">-e</span> 1e-05 <span class="nt" style="color: #000080;">--outfmt</span> 6 <span class="nt" style="color: #000080;">--sensitive</span> 2>/dev/null</span>

</pre>

</td>

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<tr class="line_holder" id="" style="line-height: 1.6;">

<td class="diff-line-num old_line" data-linenumber="24" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

24

</td>

<td class="diff-line-num new_line" data-linenumber="24" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

24

</td>

<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">

<pre style="margin: 0;"> <span id="LC24" class="line" lang="shell"></span>

</pre>

</td>

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<tr class="line_holder" id="" style="line-height: 1.6;">

<td class="diff-line-num old_line" data-linenumber="25" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

25

</td>

<td class="diff-line-num new_line" data-linenumber="25" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

25

</td>

<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">

<pre style="margin: 0;"> <span id="LC25" class="line" lang="shell"><span class="c" style="color: #998; font-style: italic;"># TODO: 10 DONE: 2 Running: 3 -> 11</span></span>

</pre>

</td>

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<tr class="line_holder old" id="" style="line-height: 1.6;">

<td class="diff-line-num old old_line" data-linenumber="26" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

26

</td>

<td class="diff-line-num new_line old" data-linenumber="26" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

</td>

<td class="line_content old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">

<pre style="margin: 0;">-<span id="LC26" class="line" lang="shell">diamond blastp <span class="nt" style="color: #000080;">--threads</span> 1 <span class="nt" style="color: #000080;">--db</span> <span class="s1" style="color: #d14;">'test/E.faa.diamond'</span> <span class="nt" style="color: #000080;">--query</span> <span class="s1" style="color: #d14;">'test/M.faa'</span> <span class="nt" style="color: #000080;">--out</span> <span class="nv" style="color: #008080;">$TESTDIR</span>/M.faa.vs.E.faa.diamond <span class="nt" style="color: #000080;">-e</span> 1e-05 <span class="nt" style="color: #000080;">--outfmt</span> 6 <span class="nt" style="color: #000080;">--<span class="idiff left">quiet</span></span><span class="idiff">  </span><span class="nt" style="color: #000080;"><span class="idiff right">--</span>sensitive</span> 2>/dev/null</span>

</pre>

</td>

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<tr class="line_holder old" id="" style="line-height: 1.6;">

<td class="diff-line-num old old_line" data-linenumber="27" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

27

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<td class="diff-line-num new_line old" data-linenumber="26" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

</td>

<td class="line_content old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">

<pre style="margin: 0;">-<span id="LC27" class="line" lang="shell">diamond blastp <span class="nt" style="color: #000080;">--threads</span> 1 <span class="nt" style="color: #000080;">--db</span> <span class="s1" style="color: #d14;">'test/C2.faa.diamond'</span> <span class="nt" style="color: #000080;">--query</span> <span class="s1" style="color: #d14;">'test/C.faa'</span> <span class="nt" style="color: #000080;">--out</span> <span class="nv" style="color: #008080;">$TESTDIR</span>/C.faa.vs.C2.faa.diamond <span class="nt" style="color: #000080;">-e</span> 1e-05 <span class="nt" style="color: #000080;">--outfmt</span> 6 <span class="nt" style="color: #000080;">--<span class="idiff left">quiet</span></span><span class="idiff">  </span><span class="nt" style="color: #000080;"><span class="idiff right">--</span>sensitive</span> 2>/dev/null</span>

</pre>

</td>

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<tr class="line_holder old" id="" style="line-height: 1.6;">

<td class="diff-line-num old old_line" data-linenumber="28" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

28

</td>

<td class="diff-line-num new_line old" data-linenumber="26" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

</td>

<td class="line_content old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">

<pre style="margin: 0;">-<span id="LC28" class="line" lang="shell">diamond blastp <span class="nt" style="color: #000080;">--threads</span> 1 <span class="nt" style="color: #000080;">--db</span> <span class="s1" style="color: #d14;">'test/M.faa.diamond'</span> <span class="nt" style="color: #000080;">--query</span> <span class="s1" style="color: #d14;">'test/C.faa'</span> <span class="nt" style="color: #000080;">--out</span> <span class="nv" style="color: #008080;">$TESTDIR</span>/C.faa.vs.M.faa.diamond <span class="nt" style="color: #000080;">-e</span> 1e-05 <span class="nt" style="color: #000080;">--outfmt</span> 6 <span class="nt" style="color: #000080;">--<span class="idiff left">quiet</span></span><span class="idiff">  </span><span class="nt" style="color: #000080;"><span class="idiff right">--</span>sensitive</span> 2>/dev/null</span>

</pre>

</td>

</tr>

<tr class="line_holder new" id="" style="line-height: 1.6;">

<td class="diff-line-num new old_line" data-linenumber="29" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

</td>

<td class="diff-line-num new new_line" data-linenumber="26" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

26

</td>

<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">

<pre style="margin: 0;">+<span id="LC26" class="line" lang="shell">diamond blastp <span class="nt" style="color: #000080;">--threads</span> 1 <span class="nt" style="color: #000080;">--db</span> <span class="s1" style="color: #d14;">'test/E.faa.diamond'</span> <span class="nt" style="color: #000080;">--query</span> <span class="s1" style="color: #d14;">'test/M.faa'</span> <span class="nt" style="color: #000080;">--out</span> <span class="nv" style="color: #008080;">$TESTDIR</span>/M.faa.vs.E.faa.diamond <span class="nt" style="color: #000080;">-e</span> 1e-05 <span class="nt" style="color: #000080;">--outfmt</span> 6 <span class="nt" style="color: #000080;">--sensitive</span> 2>/dev/null</span>

</pre>

</td>

</tr>

<tr class="line_holder new" id="" style="line-height: 1.6;">

<td class="diff-line-num new old_line" data-linenumber="29" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

</td>

<td class="diff-line-num new new_line" data-linenumber="27" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

27

</td>

<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">

<pre style="margin: 0;">+<span id="LC27" class="line" lang="shell">diamond blastp <span class="nt" style="color: #000080;">--threads</span> 1 <span class="nt" style="color: #000080;">--db</span> <span class="s1" style="color: #d14;">'test/C2.faa.diamond'</span> <span class="nt" style="color: #000080;">--query</span> <span class="s1" style="color: #d14;">'test/C.faa'</span> <span class="nt" style="color: #000080;">--out</span> <span class="nv" style="color: #008080;">$TESTDIR</span>/C.faa.vs.C2.faa.diamond <span class="nt" style="color: #000080;">-e</span> 1e-05 <span class="nt" style="color: #000080;">--outfmt</span> 6 <span class="nt" style="color: #000080;">--sensitive</span> 2>/dev/null</span>

</pre>

</td>

</tr>

<tr class="line_holder new" id="" style="line-height: 1.6;">

<td class="diff-line-num new old_line" data-linenumber="29" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

</td>

<td class="diff-line-num new new_line" data-linenumber="28" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

28

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<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">

<pre style="margin: 0;">+<span id="LC28" class="line" lang="shell">diamond blastp <span class="nt" style="color: #000080;">--threads</span> 1 <span class="nt" style="color: #000080;">--db</span> <span class="s1" style="color: #d14;">'test/M.faa.diamond'</span> <span class="nt" style="color: #000080;">--query</span> <span class="s1" style="color: #d14;">'test/C.faa'</span> <span class="nt" style="color: #000080;">--out</span> <span class="nv" style="color: #008080;">$TESTDIR</span>/C.faa.vs.M.faa.diamond <span class="nt" style="color: #000080;">-e</span> 1e-05 <span class="nt" style="color: #000080;">--outfmt</span> 6 <span class="nt" style="color: #000080;">--sensitive</span> 2>/dev/null</span>

</pre>

</td>

</tr>

<tr class="line_holder" id="" style="line-height: 1.6;">

<td class="diff-line-num old_line" data-linenumber="29" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

29

</td>

<td class="diff-line-num new_line" data-linenumber="29" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

29

</td>

<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">

<pre style="margin: 0;"> <span id="LC29" class="line" lang="shell"></span>

</pre>

</td>

</tr>

<tr class="line_holder" id="" style="line-height: 1.6;">

<td class="diff-line-num old_line" data-linenumber="30" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

30

</td>

<td class="diff-line-num new_line" data-linenumber="30" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

30

</td>

<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">

<pre style="margin: 0;"> <span id="LC30" class="line" lang="shell"><span class="c" style="color: #998; font-style: italic;"># TODO: 10 DONE: 3 Running: 3 -> 10</span></span>

</pre>

</td>

</tr>

<tr class="line_holder old" id="" style="line-height: 1.6;">

<td class="diff-line-num old old_line" data-linenumber="31" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

31

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<td class="diff-line-num new_line old" data-linenumber="31" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

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<pre style="margin: 0;">-<span id="LC31" class="line" lang="shell">diamond blastp <span class="nt" style="color: #000080;">--threads</span> 1 <span class="nt" style="color: #000080;">--db</span> <span class="s1" style="color: #d14;">'test/E.faa.diamond'</span> <span class="nt" style="color: #000080;">--query</span> <span class="s1" style="color: #d14;">'test/C2.faa'</span> <span class="nt" style="color: #000080;">--out</span> <span class="nv" style="color: #008080;">$TESTDIR</span>/C2.faa.vs.E.faa.diamond <span class="nt" style="color: #000080;">-e</span> 1e-05 <span class="nt" style="color: #000080;">--outfmt</span> 6 <span class="nt" style="color: #000080;">--<span class="idiff left">quiet</span></span><span class="idiff">  </span><span class="nt" style="color: #000080;"><span class="idiff right">--</span>sensitive</span> 2>/dev/null</span>

</pre>

</td>

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<td class="diff-line-num old old_line" data-linenumber="32" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

32

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<td class="diff-line-num new_line old" data-linenumber="31" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

</td>

<td class="line_content old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">

<pre style="margin: 0;">-<span id="LC32" class="line" lang="shell">diamond blastp <span class="nt" style="color: #000080;">--threads</span> 1 <span class="nt" style="color: #000080;">--db</span> <span class="s1" style="color: #d14;">'test/C2.faa.diamond'</span> <span class="nt" style="color: #000080;">--query</span> <span class="s1" style="color: #d14;">'test/E.faa'</span> <span class="nt" style="color: #000080;">--out</span> <span class="nv" style="color: #008080;">$TESTDIR</span>/E.faa.vs.C2.faa.diamond <span class="nt" style="color: #000080;">-e</span> 1e-05 <span class="nt" style="color: #000080;">--outfmt</span> 6 <span class="nt" style="color: #000080;">--<span class="idiff left">quiet</span></span><span class="idiff">  </span><span class="nt" style="color: #000080;"><span class="idiff right">--</span>sensitive</span> 2>/dev/null</span>

</pre>

</td>

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<tr class="line_holder new" id="" style="line-height: 1.6;">

<td class="diff-line-num new old_line" data-linenumber="33" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

</td>

<td class="diff-line-num new new_line" data-linenumber="31" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

31

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<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">

<pre style="margin: 0;">+<span id="LC31" class="line" lang="shell">diamond blastp <span class="nt" style="color: #000080;">--threads</span> 1 <span class="nt" style="color: #000080;">--db</span> <span class="s1" style="color: #d14;">'test/E.faa.diamond'</span> <span class="nt" style="color: #000080;">--query</span> <span class="s1" style="color: #d14;">'test/C2.faa'</span> <span class="nt" style="color: #000080;">--out</span> <span class="nv" style="color: #008080;">$TESTDIR</span>/C2.faa.vs.E.faa.diamond <span class="nt" style="color: #000080;">-e</span> 1e-05 <span class="nt" style="color: #000080;">--outfmt</span> 6 <span class="nt" style="color: #000080;">--sensitive</span> 2>/dev/null</span>

</pre>

</td>

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<tr class="line_holder new" id="" style="line-height: 1.6;">

<td class="diff-line-num new old_line" data-linenumber="33" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

</td>

<td class="diff-line-num new new_line" data-linenumber="32" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

32

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<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">

<pre style="margin: 0;">+<span id="LC32" class="line" lang="shell">diamond blastp <span class="nt" style="color: #000080;">--threads</span> 1 <span class="nt" style="color: #000080;">--db</span> <span class="s1" style="color: #d14;">'test/C2.faa.diamond'</span> <span class="nt" style="color: #000080;">--query</span> <span class="s1" style="color: #d14;">'test/E.faa'</span> <span class="nt" style="color: #000080;">--out</span> <span class="nv" style="color: #008080;">$TESTDIR</span>/E.faa.vs.C2.faa.diamond <span class="nt" style="color: #000080;">-e</span> 1e-05 <span class="nt" style="color: #000080;">--outfmt</span> 6 <span class="nt" style="color: #000080;">--sensitive</span> 2>/dev/null</span>

</pre>

</td>

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<td class="diff-line-num old_line" data-linenumber="33" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

33

</td>

<td class="diff-line-num new_line" data-linenumber="33" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

33

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<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">

<pre style="margin: 0;"> <span id="LC33" class="line" lang="shell"></span>

</pre>

</td>

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<td class="diff-line-num old_line" data-linenumber="34" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

34

</td>

<td class="diff-line-num new_line" data-linenumber="34" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

34

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<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">

<pre style="margin: 0;"> <span id="LC34" class="line" lang="shell"><span class="c" style="color: #998; font-style: italic;"># TODO: 10 DONE: 4 Running: 3 -> 9</span></span>

</pre>

</td>

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<tr class="line_holder old" id="" style="line-height: 1.6;">

<td class="diff-line-num old old_line" data-linenumber="35" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

35

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<td class="diff-line-num new_line old" data-linenumber="35" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

</td>

<td class="line_content old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">

<pre style="margin: 0;">-<span id="LC35" class="line" lang="shell">diamond blastp <span class="nt" style="color: #000080;">--threads</span> 1 <span class="nt" style="color: #000080;">--db</span> <span class="s1" style="color: #d14;">'test/L.faa.diamond'</span> <span class="nt" style="color: #000080;">--query</span> <span class="s1" style="color: #d14;">'test/M.faa'</span> <span class="nt" style="color: #000080;">--out</span> <span class="nv" style="color: #008080;">$TESTDIR</span>/M.faa.vs.L.faa.diamond <span class="nt" style="color: #000080;">-e</span> 1e-05 <span class="nt" style="color: #000080;">--outfmt</span> 6 <span class="nt" style="color: #000080;">--<span class="idiff left">quiet</span></span><span class="idiff">  </span><span class="nt" style="color: #000080;"><span class="idiff right">--</span>sensitive</span> 2>/dev/null</span>

</pre>

</td>

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<tr class="line_holder new" id="" style="line-height: 1.6;">

<td class="diff-line-num new old_line" data-linenumber="36" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

</td>

<td class="diff-line-num new new_line" data-linenumber="35" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

35

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<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">

<pre style="margin: 0;">+<span id="LC35" class="line" lang="shell">diamond blastp <span class="nt" style="color: #000080;">--threads</span> 1 <span class="nt" style="color: #000080;">--db</span> <span class="s1" style="color: #d14;">'test/L.faa.diamond'</span> <span class="nt" style="color: #000080;">--query</span> <span class="s1" style="color: #d14;">'test/M.faa'</span> <span class="nt" style="color: #000080;">--out</span> <span class="nv" style="color: #008080;">$TESTDIR</span>/M.faa.vs.L.faa.diamond <span class="nt" style="color: #000080;">-e</span> 1e-05 <span class="nt" style="color: #000080;">--outfmt</span> 6 <span class="nt" style="color: #000080;">--sensitive</span> 2>/dev/null</span>

</pre>

</td>

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<td class="diff-line-num old_line" data-linenumber="36" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

36

</td>

<td class="diff-line-num new_line" data-linenumber="36" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

36

</td>

<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">

<pre style="margin: 0;"> <span id="LC36" class="line" lang="shell"></span>

</pre>

</td>

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<td class="diff-line-num old_line" data-linenumber="37" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

37

</td>

<td class="diff-line-num new_line" data-linenumber="37" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

37

</td>

<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">

<pre style="margin: 0;"> <span id="LC37" class="line" lang="shell"><span class="c" style="color: #998; font-style: italic;"># TODO: 10 DONE: 5 Running: 3 -> 8</span></span>

</pre>

</td>

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<tr class="line_holder old" id="" style="line-height: 1.6;">

<td class="diff-line-num old old_line" data-linenumber="38" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

38

</td>

<td class="diff-line-num new_line old" data-linenumber="38" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

</td>

<td class="line_content old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">

<pre style="margin: 0;">-<span id="LC38" class="line" lang="shell">diamond blastp <span class="nt" style="color: #000080;">--threads</span> 1 <span class="nt" style="color: #000080;">--db</span> <span class="s1" style="color: #d14;">'test/L.faa.diamond'</span> <span class="nt" style="color: #000080;">--query</span> <span class="s1" style="color: #d14;">'test/C2.faa'</span> <span class="nt" style="color: #000080;">--out</span> <span class="nv" style="color: #008080;">$TESTDIR</span>/C2.faa.vs.L.faa.diamond <span class="nt" style="color: #000080;">-e</span> 1e-05 <span class="nt" style="color: #000080;">--outfmt</span> 6 <span class="nt" style="color: #000080;">--<span class="idiff left">quiet</span></span><span class="idiff">  </span><span class="nt" style="color: #000080;"><span class="idiff right">--</span>sensitive</span> 2>/dev/null</span>

</pre>

</td>

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<tr class="line_holder old" id="" style="line-height: 1.6;">

<td class="diff-line-num old old_line" data-linenumber="39" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

39

</td>

<td class="diff-line-num new_line old" data-linenumber="38" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

</td>

<td class="line_content old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">

<pre style="margin: 0;">-<span id="LC39" class="line" lang="shell">diamond blastp <span class="nt" style="color: #000080;">--threads</span> 1 <span class="nt" style="color: #000080;">--db</span> <span class="s1" style="color: #d14;">'test/C2.faa.diamond'</span> <span class="nt" style="color: #000080;">--query</span> <span class="s1" style="color: #d14;">'test/L.faa'</span> <span class="nt" style="color: #000080;">--out</span> <span class="nv" style="color: #008080;">$TESTDIR</span>/L.faa.vs.C2.faa.diamond <span class="nt" style="color: #000080;">-e</span> 1e-05 <span class="nt" style="color: #000080;">--outfmt</span> 6 <span class="nt" style="color: #000080;">--<span class="idiff left">quiet</span></span><span class="idiff">  </span><span class="nt" style="color: #000080;"><span class="idiff right">--</span>sensitive</span> 2>/dev/null</span>

</pre>

</td>

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<tr class="line_holder old" id="" style="line-height: 1.6;">

<td class="diff-line-num old old_line" data-linenumber="40" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

40

</td>

<td class="diff-line-num new_line old" data-linenumber="38" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

</td>

<td class="line_content old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">

<pre style="margin: 0;">-<span id="LC40" class="line" lang="shell">diamond blastp <span class="nt" style="color: #000080;">--threads</span> 1 <span class="nt" style="color: #000080;">--db</span> <span class="s1" style="color: #d14;">'test/L.faa.diamond'</span> <span class="nt" style="color: #000080;">--query</span> <span class="s1" style="color: #d14;">'test/E.faa'</span> <span class="nt" style="color: #000080;">--out</span> <span class="nv" style="color: #008080;">$TESTDIR</span>/E.faa.vs.L.faa.diamond <span class="nt" style="color: #000080;">-e</span> 1e-05 <span class="nt" style="color: #000080;">--outfmt</span> 6 <span class="nt" style="color: #000080;">--<span class="idiff left">quiet</span></span><span class="idiff">  </span><span class="nt" style="color: #000080;"><span class="idiff right">--</span>sensitive</span> 2>/dev/null</span>

</pre>

</td>

</tr>

<tr class="line_holder old" id="" style="line-height: 1.6;">

<td class="diff-line-num old old_line" data-linenumber="41" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

41

</td>

<td class="diff-line-num new_line old" data-linenumber="38" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

</td>

<td class="line_content old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">

<pre style="margin: 0;">-<span id="LC41" class="line" lang="shell">diamond blastp <span class="nt" style="color: #000080;">--threads</span> 1 <span class="nt" style="color: #000080;">--db</span> <span class="s1" style="color: #d14;">'test/M.faa.diamond'</span> <span class="nt" style="color: #000080;">--query</span> <span class="s1" style="color: #d14;">'test/E.faa'</span> <span class="nt" style="color: #000080;">--out</span> <span class="nv" style="color: #008080;">$TESTDIR</span>/E.faa.vs.M.faa.diamond <span class="nt" style="color: #000080;">-e</span> 1e-05 <span class="nt" style="color: #000080;">--outfmt</span> 6 <span class="nt" style="color: #000080;">--<span class="idiff left">quiet</span></span><span class="idiff">  </span><span class="nt" style="color: #000080;"><span class="idiff right">--</span>sensitive</span> 2>/dev/null</span>

</pre>

</td>

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<td class="diff-line-num new old_line" data-linenumber="42" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

</td>

<td class="diff-line-num new new_line" data-linenumber="38" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

38

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<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">

<pre style="margin: 0;">+<span id="LC38" class="line" lang="shell">diamond blastp <span class="nt" style="color: #000080;">--threads</span> 1 <span class="nt" style="color: #000080;">--db</span> <span class="s1" style="color: #d14;">'test/L.faa.diamond'</span> <span class="nt" style="color: #000080;">--query</span> <span class="s1" style="color: #d14;">'test/C2.faa'</span> <span class="nt" style="color: #000080;">--out</span> <span class="nv" style="color: #008080;">$TESTDIR</span>/C2.faa.vs.L.faa.diamond <span class="nt" style="color: #000080;">-e</span> 1e-05 <span class="nt" style="color: #000080;">--outfmt</span> 6 <span class="nt" style="color: #000080;">--sensitive</span> 2>/dev/null</span>

</pre>

</td>

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<tr class="line_holder new" id="" style="line-height: 1.6;">

<td class="diff-line-num new old_line" data-linenumber="42" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

</td>

<td class="diff-line-num new new_line" data-linenumber="39" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

39

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<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">

<pre style="margin: 0;">+<span id="LC39" class="line" lang="shell">diamond blastp <span class="nt" style="color: #000080;">--threads</span> 1 <span class="nt" style="color: #000080;">--db</span> <span class="s1" style="color: #d14;">'test/C2.faa.diamond'</span> <span class="nt" style="color: #000080;">--query</span> <span class="s1" style="color: #d14;">'test/L.faa'</span> <span class="nt" style="color: #000080;">--out</span> <span class="nv" style="color: #008080;">$TESTDIR</span>/L.faa.vs.C2.faa.diamond <span class="nt" style="color: #000080;">-e</span> 1e-05 <span class="nt" style="color: #000080;">--outfmt</span> 6 <span class="nt" style="color: #000080;">--sensitive</span> 2>/dev/null</span>

</pre>

</td>

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<tr class="line_holder new" id="" style="line-height: 1.6;">

<td class="diff-line-num new old_line" data-linenumber="42" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

</td>

<td class="diff-line-num new new_line" data-linenumber="40" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

40

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<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">

<pre style="margin: 0;">+<span id="LC40" class="line" lang="shell">diamond blastp <span class="nt" style="color: #000080;">--threads</span> 1 <span class="nt" style="color: #000080;">--db</span> <span class="s1" style="color: #d14;">'test/L.faa.diamond'</span> <span class="nt" style="color: #000080;">--query</span> <span class="s1" style="color: #d14;">'test/E.faa'</span> <span class="nt" style="color: #000080;">--out</span> <span class="nv" style="color: #008080;">$TESTDIR</span>/E.faa.vs.L.faa.diamond <span class="nt" style="color: #000080;">-e</span> 1e-05 <span class="nt" style="color: #000080;">--outfmt</span> 6 <span class="nt" style="color: #000080;">--sensitive</span> 2>/dev/null</span>

</pre>

</td>

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<tr class="line_holder new" id="" style="line-height: 1.6;">

<td class="diff-line-num new old_line" data-linenumber="42" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

</td>

<td class="diff-line-num new new_line" data-linenumber="41" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

41

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<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">

<pre style="margin: 0;">+<span id="LC41" class="line" lang="shell">diamond blastp <span class="nt" style="color: #000080;">--threads</span> 1 <span class="nt" style="color: #000080;">--db</span> <span class="s1" style="color: #d14;">'test/M.faa.diamond'</span> <span class="nt" style="color: #000080;">--query</span> <span class="s1" style="color: #d14;">'test/E.faa'</span> <span class="nt" style="color: #000080;">--out</span> <span class="nv" style="color: #008080;">$TESTDIR</span>/E.faa.vs.M.faa.diamond <span class="nt" style="color: #000080;">-e</span> 1e-05 <span class="nt" style="color: #000080;">--outfmt</span> 6 <span class="nt" style="color: #000080;">--sensitive</span> 2>/dev/null</span>

</pre>

</td>

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<tr class="line_holder" id="" style="line-height: 1.6;">

<td class="diff-line-num old_line" data-linenumber="42" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

42

</td>

<td class="diff-line-num new_line" data-linenumber="42" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

42

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<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">

<pre style="margin: 0;"> <span id="LC42" class="line" lang="shell"></span>

</pre>

</td>

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<td class="diff-line-num old_line" data-linenumber="43" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

43

</td>

<td class="diff-line-num new_line" data-linenumber="43" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

43

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<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">

<pre style="margin: 0;"> <span id="LC43" class="line" lang="shell"><span class="c" style="color: #998; font-style: italic;">#TODO: 10 DONE: 6 Running: 3 -> 7</span></span>

</pre>

</td>

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<tr class="line_holder old" id="" style="line-height: 1.6;">

<td class="diff-line-num old old_line" data-linenumber="44" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

44

</td>

<td class="diff-line-num new_line old" data-linenumber="44" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

</td>

<td class="line_content old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">

<pre style="margin: 0;">-<span id="LC44" class="line" lang="shell">diamond blastp <span class="nt" style="color: #000080;">--threads</span> 1 <span class="nt" style="color: #000080;">--db</span> <span class="s1" style="color: #d14;">'test/M.faa.diamond'</span> <span class="nt" style="color: #000080;">--query</span> <span class="s1" style="color: #d14;">'test/C2.faa'</span> <span class="nt" style="color: #000080;">--out</span> <span class="nv" style="color: #008080;">$TESTDIR</span>/C2.faa.vs.M.faa.diamond <span class="nt" style="color: #000080;">-e</span> 1e-05 <span class="nt" style="color: #000080;">--outfmt</span> 6 <span class="nt" style="color: #000080;">--<span class="idiff left">quiet</span></span><span class="idiff">  </span><span class="nt" style="color: #000080;"><span class="idiff right">--</span>sensitive</span> 2>/dev/null</span>

</pre>

</td>

</tr>

<tr class="line_holder old" id="" style="line-height: 1.6;">

<td class="diff-line-num old old_line" data-linenumber="45" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

45

</td>

<td class="diff-line-num new_line old" data-linenumber="44" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

</td>

<td class="line_content old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">

<pre style="margin: 0;">-<span id="LC45" class="line" lang="shell">diamond blastp <span class="nt" style="color: #000080;">--threads</span> 1 <span class="nt" style="color: #000080;">--db</span> <span class="s1" style="color: #d14;">'test/C2.faa.diamond'</span> <span class="nt" style="color: #000080;">--query</span> <span class="s1" style="color: #d14;">'test/M.faa'</span> <span class="nt" style="color: #000080;">--out</span> <span class="nv" style="color: #008080;">$TESTDIR</span>/M.faa.vs.C2.faa.diamond <span class="nt" style="color: #000080;">-e</span> 1e-05 <span class="nt" style="color: #000080;">--outfmt</span> 6 <span class="nt" style="color: #000080;">--<span class="idiff left">quiet</span></span><span class="idiff">  </span><span class="nt" style="color: #000080;"><span class="idiff right">--</span>sensitive</span> 2>/dev/null</span>

</pre>

</td>

</tr>

<tr class="line_holder old" id="" style="line-height: 1.6;">

<td class="diff-line-num old old_line" data-linenumber="46" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

46

</td>

<td class="diff-line-num new_line old" data-linenumber="44" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

</td>

<td class="line_content old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">

<pre style="margin: 0;">-<span id="LC46" class="line" lang="shell">diamond blastp <span class="nt" style="color: #000080;">--threads</span> 1 <span class="nt" style="color: #000080;">--db</span> <span class="s1" style="color: #d14;">'test/M.faa.diamond'</span> <span class="nt" style="color: #000080;">--query</span> <span class="s1" style="color: #d14;">'test/L.faa'</span> <span class="nt" style="color: #000080;">--out</span> <span class="nv" style="color: #008080;">$TESTDIR</span>/L.faa.vs.M.faa.diamond <span class="nt" style="color: #000080;">-e</span> 1e-05 <span class="nt" style="color: #000080;">--outfmt</span> 6 <span class="nt" style="color: #000080;">--<span class="idiff left">quiet</span></span><span class="idiff">  </span><span class="nt" style="color: #000080;"><span class="idiff right">--</span>sensitive</span> 2>/dev/null</span>

</pre>

</td>

</tr>

<tr class="line_holder new" id="" style="line-height: 1.6;">

<td class="diff-line-num new old_line" data-linenumber="47" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

</td>

<td class="diff-line-num new new_line" data-linenumber="44" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

44

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<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">

<pre style="margin: 0;">+<span id="LC44" class="line" lang="shell">diamond blastp <span class="nt" style="color: #000080;">--threads</span> 1 <span class="nt" style="color: #000080;">--db</span> <span class="s1" style="color: #d14;">'test/M.faa.diamond'</span> <span class="nt" style="color: #000080;">--query</span> <span class="s1" style="color: #d14;">'test/C2.faa'</span> <span class="nt" style="color: #000080;">--out</span> <span class="nv" style="color: #008080;">$TESTDIR</span>/C2.faa.vs.M.faa.diamond <span class="nt" style="color: #000080;">-e</span> 1e-05 <span class="nt" style="color: #000080;">--outfmt</span> 6 <span class="nt" style="color: #000080;">--sensitive</span> 2>/dev/null</span>

</pre>

</td>

</tr>

<tr class="line_holder new" id="" style="line-height: 1.6;">

<td class="diff-line-num new old_line" data-linenumber="47" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

</td>

<td class="diff-line-num new new_line" data-linenumber="45" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

45

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<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">

<pre style="margin: 0;">+<span id="LC45" class="line" lang="shell">diamond blastp <span class="nt" style="color: #000080;">--threads</span> 1 <span class="nt" style="color: #000080;">--db</span> <span class="s1" style="color: #d14;">'test/C2.faa.diamond'</span> <span class="nt" style="color: #000080;">--query</span> <span class="s1" style="color: #d14;">'test/M.faa'</span> <span class="nt" style="color: #000080;">--out</span> <span class="nv" style="color: #008080;">$TESTDIR</span>/M.faa.vs.C2.faa.diamond <span class="nt" style="color: #000080;">-e</span> 1e-05 <span class="nt" style="color: #000080;">--outfmt</span> 6 <span class="nt" style="color: #000080;">--sensitive</span> 2>/dev/null</span>

</pre>

</td>

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<tr class="line_holder new" id="" style="line-height: 1.6;">

<td class="diff-line-num new old_line" data-linenumber="47" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

</td>

<td class="diff-line-num new new_line" data-linenumber="46" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

46

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<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">

<pre style="margin: 0;">+<span id="LC46" class="line" lang="shell">diamond blastp <span class="nt" style="color: #000080;">--threads</span> 1 <span class="nt" style="color: #000080;">--db</span> <span class="s1" style="color: #d14;">'test/M.faa.diamond'</span> <span class="nt" style="color: #000080;">--query</span> <span class="s1" style="color: #d14;">'test/L.faa'</span> <span class="nt" style="color: #000080;">--out</span> <span class="nv" style="color: #008080;">$TESTDIR</span>/L.faa.vs.M.faa.diamond <span class="nt" style="color: #000080;">-e</span> 1e-05 <span class="nt" style="color: #000080;">--outfmt</span> 6 <span class="nt" style="color: #000080;">--sensitive</span> 2>/dev/null</span>

</pre>

</td>

</tr>

<tr class="line_holder" id="" style="line-height: 1.6;">

<td class="diff-line-num old_line" data-linenumber="47" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

47

</td>

<td class="diff-line-num new_line" data-linenumber="47" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

47

</td>

<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">

<pre style="margin: 0;"> <span id="LC47" class="line" lang="shell"></span>

</pre>

</td>

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<tr class="line_holder" id="" style="line-height: 1.6;">

<td class="diff-line-num old_line" data-linenumber="48" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

48

</td>

<td class="diff-line-num new_line" data-linenumber="48" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

48

</td>

<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">

<pre style="margin: 0;"> <span id="LC48" class="line" lang="shell"><span class="nb" style="color: #0086b3;">rm</span> <span class="nt" style="color: #000080;">-rf</span> <span class="nv" style="color: #008080;">$TESTDIR</span></span></pre>

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<a href="https://salsa.debian.org/med-team/diamond-aligner/-/commit/ec27f76348b4aaf195a9cc78bd09ca5b017ba3ba">View it on GitLab</a>.

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You're receiving this email because of your account on salsa.debian.org.

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