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<h3>
Michael R. Crusoe pushed to branch master
at <a href="https://salsa.debian.org/med-team/libssw">Debian Med / libssw</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/libssw/-/commit/2bf8a93968fb8a579669d92db5267efd899fa7dd">2bf8a939</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2020-04-20T14:07:59+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">don't use the example programs for testing
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/libssw/-/commit/56f5494daf12afdf38615408d3dc0c70ac90ff85">56f5494d</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2020-04-20T14:08:00+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Add "nojava" build profile
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/libssw/-/commit/637043d5659554995094a811a3af65f3af9ec2f6">637043d5</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2020-04-20T14:21:41+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">fix patches ; how did that happen?
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/libssw/-/commit/4f0c7e4de0c04574d50ced353ff43de6fe31f0b7">4f0c7e4d</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2020-04-20T14:26:25+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 1.1</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/libssw/-/commit/44d5bb7c85823483edd41aa0fb877636c01c2cfc">44d5bb7c</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2020-04-20T14:27:21+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Update upstream source from tag 'upstream/1.1'
Update to upstream version '1.1'
with Debian dir 529e07f63e78a1149d79ab930de6d73510e4b0b1</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/libssw/-/commit/10ffa44bd716572871f3b46454817ed9faad6324">10ffa44b</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2020-04-20T14:30:16+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">fix patches again
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/libssw/-/commit/72d851ee68065e2729b6147ffc140830b6160fd0">72d851ee</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2020-04-20T14:31:59+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: Add salsa-ci file
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/libssw/-/commit/db50860ce5d1df1d84fdc745bf42e0139a4eb494">db50860c</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2020-04-20T14:32:00+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: Rules-Requires-Root: no
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/libssw/-/commit/91a32f485436f0d77b6ca00ed793d26010afbf30">91a32f48</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2020-04-20T14:32:04+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Set upstream metadata fields: Bug-Database, Bug-Submit, Repository, Repository-Browse.</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/libssw/-/commit/517c897ab90227821fb058aa127eb5a8290ec724">517c897a</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2020-04-20T14:39:59+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">test
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/libssw/-/commit/7e6890421b32b74d6db8c026b7fc10174e7e2ec3">7e689042</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2020-06-04T16:50:28+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Update Michael's email address
</pre>
</li>
</ul>
<h4>30 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#8ec9a00bfd09b3190ac6b22251dbb1aa95a0579d">
README.md
</a>
</li>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
</a>
</li>
<li class="file-stats">
<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
</a>
</li>
<li class="file-stats">
<a href="#75de8a8fba7b2dc8f523b991ff6a523ed2bf920f">
debian/patches/build_all_libs.patch
</a>
</li>
<li class="file-stats">
<a href="#4d4a394ff4174f20019a8af4d8b6185efe92c21f">
debian/patches/hardening.patch
</a>
</li>
<li class="file-stats">
<a href="#52dc3e58185a550acb60dd82bc30b7c62d391abb">
debian/patches/rename_tool.patch
</a>
</li>
<li class="file-stats">
<a href="#5dc91bdd30262777c0556235b73413cd5865a144">
debian/patches/simde.patch
</a>
</li>
<li class="file-stats">
<a href="#8756c63497c8dc39f7773438edf53b220c773f67">
debian/rules
</a>
</li>
<li class="file-stats">
<a href="#b1dbf22e88351ec0d5d1d1a7f53295504b480e61">
<span class="new-file">
+
debian/salsa-ci.yml
</span>
</a>
</li>
<li class="file-stats">
<a href="#f5606a935d95a2f20059a7ac1136f47b2edadbf6">
debian/upstream/metadata
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</li>
<li class="file-stats">
<a href="#7bbe96905d224e4ef9b6241676a0ee94932d3e19">
<span class="deleted-file">
−
demo/new.txt
</span>
</a>
</li>
<li class="file-stats">
<a href="#df0e4caa90dc2ac431eb6ba5305faf8a0e284b6e">
<span class="deleted-file">
−
demo/old.txt
</span>
</a>
</li>
<li class="file-stats">
<a href="#8ce6006ecd6e1949cbff71309c7743922450158f">
<span class="deleted-file">
−
demo/output.sam
</span>
</a>
</li>
<li class="file-stats">
<a href="#953dea787ebfc7ec6cfb16e329ac3fad36e24098">
<span class="deleted-file">
−
demo/pRead.fa
</span>
</a>
</li>
<li class="file-stats">
<a href="#ca1adc883fa7cae318a7544025e73368f380e7c4">
<span class="deleted-file">
−
demo/pRef.fa
</span>
</a>
</li>
<li class="file-stats">
<a href="#4b561868b430856029f5bc890049ad49d9648e8e">
<span class="deleted-file">
−
demo/query.fa
</span>
</a>
</li>
<li class="file-stats">
<a href="#5cf4a933540afe944c2154fc9fce269a512ab6f0">
<span class="deleted-file">
−
demo/query.fastq
</span>
</a>
</li>
<li class="file-stats">
<a href="#f94ac958cf984c8c2e2de95818a8cf5a73d0d0ff">
<span class="deleted-file">
−
demo/query1.fa
</span>
</a>
</li>
<li class="file-stats">
<a href="#ce18ac8d0dec073f5834ae743188f88690e89f99">
<span class="deleted-file">
−
demo/query2.fa
</span>
</a>
</li>
<li class="file-stats">
<a href="#8211e4b2b9cd3dd81013e035545a6a836b70fef3">
<span class="deleted-file">
−
demo/r1.fa
</span>
</a>
</li>
<li class="file-stats">
<a href="#4900f4a91e22398bcbab45dea413b71c6fe68d14">
<span class="deleted-file">
−
demo/r1_query.fq
</span>
</a>
</li>
<li class="file-stats">
<a href="#dba6d63d32e9766d55155fa24769c878d520efd7">
<span class="deleted-file">
−
demo/target.fa
</span>
</a>
</li>
<li class="file-stats">
<a href="#177d21c38101fb4e45d3dc053245b33595d131c9">
<span class="deleted-file">
−
demo/target.fastq
</span>
</a>
</li>
<li class="file-stats">
<a href="#4b2a86551ecb387ff54e455c48d2595a4bb3f83d">
<span class="deleted-file">
−
demo/target1.fa
</span>
</a>
</li>
<li class="file-stats">
<a href="#38e1c3f1ba1ea7a40337ac0d08f28678a3444a6b">
<span class="deleted-file">
−
demo/target2.fa
</span>
</a>
</li>
<li class="file-stats">
<a href="#93cbdd0973c9a7b59e5cef90a94300ab95fd66e5">
<span class="new-file">
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src/.gitignore
</span>
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</li>
<li class="file-stats">
<a href="#09a8e11089bd7b184c2ba7778565c1350e1c7e3a">
src/Makefile
</a>
</li>
<li class="file-stats">
<a href="#35fb435cf9b530ce411f4095badbb793a4e1cd78">
src/example.cpp
</a>
</li>
<li class="file-stats">
<a href="#3a576e09615c0e19842e5f3ac31e858c9ae7fe41">
src/main.c
</a>
</li>
<li class="file-stats">
<a href="#d2865ccf8daae26eb92ec69a4ec40f059f35ef86">
src/pyssw.py
</a>
</li>
</ul>
<h5>The diff was not included because it is too large.</h5>
</div>
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<p style="font-size: small; color: #777;">
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