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<h3>
Michael R. Crusoe pushed to branch master
at <a href="https://salsa.debian.org/med-team/community/2020-covid19-hackathon">Debian Med / community / 2020-covid19-hackathon</a>
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Commits:
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<strong><a href="https://salsa.debian.org/med-team/community/2020-covid19-hackathon/-/commit/8a409106214ef3fbc505b818e3501fe663f70b71">8a409106</a></strong>
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<span>by Michael R. Crusoe</span>
<i>at 2020-06-04T13:36:19+00:00</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">small tweaks</pre>
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<h4>1 changed file:</h4>
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<a href="#1f877f6f9f0b5b2d56683e830e0aee4412164ff9">
202006_Debian-Med_hackathon.md
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<h4>Changes:</h4>
<li id="1f877f6f9f0b5b2d56683e830e0aee4412164ff9">
<a href="https://salsa.debian.org/med-team/community/2020-covid19-hackathon/-/commit/8a409106214ef3fbc505b818e3501fe663f70b71#1f877f6f9f0b5b2d56683e830e0aee4412164ff9"><strong>202006_Debian-Med_hackathon.md</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -17,10 +17,10 @@ As in the first sprint most tasks do not require any knowledge of biology or med</td>
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<pre style="margin: 0;"> <span id="LC17" class="line" lang="markdown">types of contributions are welcome: bug triage, testing, documentation,</span>
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<pre style="margin: 0;"> <span id="LC18" class="line" lang="markdown">CI, translations, packaging, and code contributions.</span>
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<pre style="margin: 0;"> <span id="LC19" class="line" lang="markdown"></span>
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<pre style="margin: 0;">-<span id="LC20" class="line" lang="markdown"><span class="p">1.</span> <span class="p">[</span><span class="nv" style="color: #008080;">Debian related bugs</span><span class="p">](</span><span class="sx" style="color: #d14;">https://blends.debian.org/med/bugs/covid-19.html</span><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC20" class="line" lang="markdown"><span class="p">1.</span> <span class="p">[</span><span class="nv" style="color: #008080;">Debian related bugs<span class="idiff left right"> in COVID-19 related packages</span></span><span class="p">](</span><span class="sx" style="color: #d14;">https://blends.debian.org/med/bugs/covid-19.html</span><span class="p">)</span></span>
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<pre style="margin: 0;"> <span id="LC21" class="line" lang="markdown"></span>
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<pre style="margin: 0;">-<span id="LC22" class="line" lang="markdown"><span class="p">2.</span> <span class="p">[</span><span class="nv" style="color: #008080;"><span class="idiff left">Software awaiting packaging</span></span><span class="p"><span class="idiff">](</span></span><span class="sx" style="color: #d14;"><span class="idiff">https://blends.debian.org/med/tasks/covid-19</span></span><span class="p"><span class="idiff">)</span></span><span class="idiff right">, please</span></span>
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<pre style="margin: 0;">-<span id="LC23" class="line" lang="markdown">respond to the RFP with your intent so we don't duplicate work</span>
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<pre style="margin: 0;">+<span id="LC22" class="line" lang="markdown"><span class="p">2.</span> <span class="p">[</span><span class="nv" style="color: #008080;"><span class="idiff left">COVID-19 related software that is awaiting packaging</span></span><span class="p"><span class="idiff">](</span></span><span class="sx" style="color: #d14;"><span class="idiff">https://blends.debian.org/med/tasks/covid-19</span></span><span class="p"><span class="idiff">)</span></span><span class="idiff right">,</span></span>
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<pre style="margin: 0;">+<span id="LC23" class="line" lang="markdown"><span class="idiff left right">please </span>respond to the RFP with your intent so we don't duplicate work</span>
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<pre style="margin: 0;"> <span id="LC24" class="line" lang="markdown"></span>
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<pre style="margin: 0;"> <span id="LC25" class="line" lang="markdown"><span class="p">3.</span> You can also contribute directly to the upstream packages, linked</span>
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<pre style="margin: 0;"> <span id="LC26" class="line" lang="markdown">from the <span class="p">[</span><span class="nv" style="color: #008080;">Debian Med COVID-19 task page</span><span class="p">](</span><span class="sx" style="color: #d14;">https://blends.debian.org/med/tasks/covid-19</span><span class="p">)</span>. Note:</span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="37" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -37,7 +37,7 @@ ppc64el / s390x (but beware the endian-related issues on s390x). From a</td>
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<pre style="margin: 0;"> <span id="LC37" class="line" lang="markdown">free/open hardware perspective it would be great to see more riscv64</span>
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<pre style="margin: 0;"> <span id="LC38" class="line" lang="markdown">support, but that is not a priority right now</span>
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<pre style="margin: 0;"> <span id="LC39" class="line" lang="markdown"></span>
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<pre style="margin: 0;">-<span id="LC40" class="line" lang="markdown"><span class="p">5.</span> The Debian Med team is also trying to <span class="p">[</span><span class="nv" style="color: #008080;">improve the availability of</span></span>
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<pre style="margin: 0;">+<span id="LC40" class="line" lang="markdown"><span class="p">5.</span> <span class="idiff left right">Python developers: </span>The Debian Med team is also trying to <span class="p">[</span><span class="nv" style="color: #008080;">improve the availability of</span></span>
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<pre style="margin: 0;"> <span id="LC41" class="line" lang="markdown"><span class="nv" style="color: #008080;">automated biomedical pipelines/workflows</span><span class="p">](</span><span class="sx" style="color: #d14;">https://doi.org/10.1007/s41019-017-0050-4</span><span class="p">)</span> using the</span>
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<pre style="margin: 0;"> <span id="LC42" class="line" lang="markdown">Common Workflow Language open standard. The reference implementation of</span>
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<pre style="margin: 0;"> <span id="LC43" class="line" lang="markdown">CWL is written in Python and there are many <span class="p">[</span><span class="nv" style="color: #008080;">open issues ready for work</span></span>
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