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<h3>

Andreas Tille pushed to branch master

at <a href="https://salsa.debian.org/med-team/community/helper-scripts">Debian Med / community / helper-scripts</a>

</h3>

<h4>

Commits:

</h4>

<ul>

<li>

<strong><a href="https://salsa.debian.org/med-team/community/helper-scripts/-/commit/ec855685bab1e1faaaa7ea021455f177d6dd3551">ec855685</a></strong>

<div>

<span>by Andreas Tille</span>

<i>at 2020-06-04T13:45:23+00:00</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">automatic update

</pre>

</li>

</ul>

<h4>2 changed files:</h4>

<ul>

<li class="file-stats">

<a href="#f6d55d24085decec06151dd27f30199089d856ca">

debian-med-tests.txt

</a>

</li>

<li class="file-stats">

<a href="#2654e31016bcee9bbe05d462121706cc8ed368af">

outdated_med-packages.txt

</a>

</li>

</ul>

<h4>Changes:</h4>

<li id="f6d55d24085decec06151dd27f30199089d856ca">

<a href="https://salsa.debian.org/med-team/community/helper-scripts/-/commit/ec855685bab1e1faaaa7ea021455f177d6dd3551#f6d55d24085decec06151dd27f30199089d856ca"><strong>debian-med-tests.txt</strong></a>

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<pre style="margin: 0;">-<span id="LC1" class="line" lang="plaintext">Last-Update: Thu, 04 Jun 2020 <span class="idiff left right">01:42:03</span> +0000</span>

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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">Last-Update: Thu, 04 Jun 2020 <span class="idiff left right">13:42:04</span> +0000</span>

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<pre style="margin: 0;"> <span id="LC2" class="line" lang="plaintext"></span>

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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext"> Source                        | Vote   |     Tasks                                           |                                 Tags                                 </span>

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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext">-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------</span>

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<pre style="margin: 0;"> <span id="LC5" class="line" lang="plaintext"> dcmtk                         |    191 | {covid-19,imaging}                                  | </span>

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<pre style="margin: 0;"> <span id="LC6" class="line" lang="plaintext"> orthanc                       |     95 | {imaging,covid-19,practice}                         | </span>

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<pre style="margin: 0;">-<span id="LC7" class="line" lang="plaintext"> gdcm                          |     5<span class="idiff left right">6</span> | {imaging-dev}                                       | </span>

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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext"> gdcm                          |     5<span class="idiff left right">8</span> | {imaging-dev}                                       | </span>

</pre>

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<pre style="margin: 0;"> <span id="LC8" class="line" lang="plaintext"> orthanc-wsi                   |     44 | {imaging,laboratory,practice,covid-19,his,oncology} | </span>

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<pre style="margin: 0;"> <span id="LC9" class="line" lang="plaintext"> htsjdk                        |     33 | {bio-dev}                                           | </span>

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<pre style="margin: 0;"> <span id="LC10" class="line" lang="plaintext"> dicom3tools                   |     30 | {imaging}                                           | </span>

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<pre style="margin: 0;"> <span id="LC11" class="line" lang="plaintext"> dcm2niix                      |     29 | {imaging}                                           | </span>

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<pre style="margin: 0;">-<span id="LC12" class="line" lang="plaintext"> dicomscope                    |     2<span class="idiff left right">8</span> | {imaging}                                           | </span>

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<pre style="margin: 0;">+<span id="LC12" class="line" lang="plaintext"> dicomscope                    |     2<span class="idiff left right">7</span> | {imaging}                                           | </span>

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<pre style="margin: 0;"> <span id="LC13" class="line" lang="plaintext"> gdcm                          |     19 | {covid-19,imaging}                                  | </span>

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<pre style="margin: 0;"> <span id="LC14" class="line" lang="plaintext"> minc-tools                    |     18 | {imaging}                                           | </span>

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<pre style="margin: 0;"> <span id="LC15" class="line" lang="plaintext"> gnumed-server                 |     17 | {covid-19,practice}                                 | </span>

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<pre style="margin: 0;"> <span id="LC16" class="line" lang="plaintext"> insighttoolkit4               |     17 | {imaging-dev}                                       | </span>

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<pre style="margin: 0;">+<span id="LC17" class="line" lang="plaintext"> ngs-sdk                       |     16 | {bio-dev}                                           | </span>

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<pre style="margin: 0;"> <span id="LC18" class="line" lang="plaintext"> invesalius                    |     15 | {imaging}                                           | </span>

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<pre style="margin: 0;">-<span id="LC18" class="line" lang="plaintext"> ngs-sdk                       |     14 | {bio-dev}                                           | </span>

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<pre style="margin: 0;"> <span id="LC19" class="line" lang="plaintext"> plastimatch                   |     14 | {imaging}                                           | </span>

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<pre style="margin: 0;"> <span id="LC20" class="line" lang="plaintext"> vtk-dicom                     |     14 | {imaging}                                           | </span>

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<pre style="margin: 0;"> <span id="LC21" class="line" lang="plaintext"> gdcm                          |     13 | {imaging-dev}                                       | </span>

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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -23,12 +23,13 @@ Last-Update: Thu, 04 Jun 2020 01:42:03 +0000</td>

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<pre style="margin: 0;"> <span id="LC23" class="line" lang="plaintext"> pixelmed                      |     13 | {imaging}                                           | </span>

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<pre style="margin: 0;"> <span id="LC24" class="line" lang="plaintext"> stacks                        |     13 | {bio}                                               | </span>

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<pre style="margin: 0;"> <span id="LC25" class="line" lang="plaintext"> adun.app                      |     12 | {bio}                                               | </span>

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<pre style="margin: 0;">+<span id="LC26" class="line" lang="plaintext"> obitools                      |     12 | {bio}                                               | </span>

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<pre style="margin: 0;"> <span id="LC27" class="line" lang="plaintext"> openslide                     |     12 | {imaging}                                           | </span>

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<pre style="margin: 0;"> <span id="LC28" class="line" lang="plaintext"> biosig4c++                    |     11 | {physics,imaging}                                   | </span>

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<pre style="margin: 0;">-<span id="LC28" class="line" lang="plaintext"> obitools                      |     11 | {bio}                                               | </span>

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<pre style="margin: 0;"> <span id="LC29" class="line" lang="plaintext"> biojava-live                  |      9 | {bio-dev}                                           | </span>

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<pre style="margin: 0;"> <span id="LC30" class="line" lang="plaintext"> librg-utils-perl              |      9 | {bio}                                               | </span>

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<pre style="margin: 0;"> <span id="LC31" class="line" lang="plaintext"> radiant                       |      9 | {bio}                                               | </span>

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<pre style="margin: 0;">+<span id="LC32" class="line" lang="plaintext"> biomaj3-cli                   |      8 | {cloud}                                             | </span>

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<pre style="margin: 0;"> <span id="LC33" class="line" lang="plaintext"> ea-utils                      |      8 | {bio}                                               | </span>

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<pre style="margin: 0;"> <span id="LC34" class="line" lang="plaintext"> ecopcr                        |      8 | {bio}                                               | </span>

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<pre style="margin: 0;"> <span id="LC35" class="line" lang="plaintext"> fastlink                      |      8 | {cloud,bio}                                         | </span>

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<pre style="margin: 0;"> <span id="LC40" class="line" lang="plaintext"> norsp                         |      8 | {bio}                                               | </span>

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<pre style="margin: 0;"> <span id="LC41" class="line" lang="plaintext"> psychopy                      |      8 | {psychology}                                        | </span>

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<pre style="margin: 0;"> <span id="LC42" class="line" lang="plaintext"> sibsim4                       |      8 | {cloud,bio}                                         | </span>

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<pre style="margin: 0;">-<span id="LC42" class="line" lang="plaintext"> staden                        |      8 | {bio}                                               | </span>

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<pre style="margin: 0;"> <span id="LC43" class="line" lang="plaintext"> alter-sequence-alignment      |      7 | {bio}                                               | </span>

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<pre style="margin: 0;"> <span id="LC44" class="line" lang="plaintext"> ampliconnoise                 |      7 | {bio,cloud}                                         | </span>

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<pre style="margin: 0;"> <span id="LC45" class="line" lang="plaintext"> arden                         |      7 | {cloud,bio}                                         | </span>

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<pre style="margin: 0;">-<span id="LC46" class="line" lang="plaintext"> biomaj3-cli                   |      7 | {cloud}                                             | </span>

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<pre style="margin: 0;"> <span id="LC46" class="line" lang="plaintext"> bio-tradis                    |      7 | {bio-dev,bio}                                       | </span>

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<pre style="margin: 0;"> <span id="LC47" class="line" lang="plaintext"> bppsuite                      |      7 | {bio}                                               | </span>

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<pre style="margin: 0;"> <span id="LC48" class="line" lang="plaintext"> embassy-domainatrix           |      7 | {bio,cloud}                                         | </span>

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<td class="diff-line-num unfold js-unfold new_line" data-linenumber="55" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>

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<pre style="margin: 0;"> <span id="LC55" class="line" lang="plaintext"> pymia                         |      7 | {imaging-dev}                                       | </span>

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<pre style="margin: 0;"> <span id="LC56" class="line" lang="plaintext"> sickle                        |      7 | {bio}                                               | </span>

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<pre style="margin: 0;"> <span id="LC57" class="line" lang="plaintext"> sigma-align                   |      7 | {bio-phylogeny,bio,cloud}                           | </span>

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<pre style="margin: 0;">+<span id="LC58" class="line" lang="plaintext"> staden                        |      7 | {bio}                                               | </span>

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<pre style="margin: 0;"> <span id="LC59" class="line" lang="plaintext"> abacas                        |      6 | {bio,covid-19}                                      | </span>

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<pre style="margin: 0;"> <span id="LC60" class="line" lang="plaintext"> anfo                          |      6 | {cloud,bio}                                         | </span>

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<pre style="margin: 0;">+<span id="LC61" class="line" lang="plaintext"> bandage                       |      6 | {bio}                                               | </span>

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<pre style="margin: 0;"> <span id="LC62" class="line" lang="plaintext"> beads                         |      6 | {bio}                                               | </span>

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<pre style="margin: 0;">+<span id="LC63" class="line" lang="plaintext"> biomaj3-daemon                |      6 | {bio}                                               | </span>

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<pre style="margin: 0;"> <span id="LC64" class="line" lang="plaintext"> bitseq                        |      6 | {bio}                                               | </span>

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<pre style="margin: 0;"> <span id="LC65" class="line" lang="plaintext"> brig                          |      6 | {bio}                                               | </span>

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<pre style="margin: 0;">-<span id="LC64" class="line" lang="plaintext"> cluster3                      |      6 | {bio}                                               | </span>

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<pre style="margin: 0;"> <span id="LC66" class="line" lang="plaintext"> daligner                      |      6 | {bio,bio-ngs}                                       | </span>

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<pre style="margin: 0;"> <span id="LC67" class="line" lang="plaintext"> dazzdb                        |      6 | {bio}                                               | </span>

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<pre style="margin: 0;">+<span id="LC68" class="line" lang="plaintext"> delly                         |      6 | {covid-19,bio}                                      | </span>

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<pre style="margin: 0;"> <span id="LC69" class="line" lang="plaintext"> edtsurf                       |      6 | {bio}                                               | </span>

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<pre style="margin: 0;"> <span id="LC70" class="line" lang="plaintext"> elastix                       |      6 | {imaging}                                           | </span>

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<pre style="margin: 0;"> <span id="LC71" class="line" lang="plaintext"> embassy-domalign              |      6 | {cloud,bio}                                         | </span>

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<pre style="margin: 0;">+<span id="LC72" class="line" lang="plaintext"> estscan                       |      6 | {bio}                                               | </span>

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<pre style="margin: 0;"> <span id="LC73" class="line" lang="plaintext"> gatb-core                     |      6 | {bio}                                               | </span>

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<pre style="margin: 0;"> <span id="LC74" class="line" lang="plaintext"> king-probe                    |      6 | {bio}                                               | </span>

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<pre style="margin: 0;">+<span id="LC75" class="line" lang="plaintext"> lagan                         |      6 | {bio}                                               | </span>

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<pre style="margin: 0;"> <span id="LC76" class="line" lang="plaintext"> libminc                       |      6 | {imaging-dev}                                       | </span>

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<pre style="margin: 0;"> <span id="LC77" class="line" lang="plaintext"> mapsembler2                   |      6 | {bio,cloud}                                         | </span>

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<pre style="margin: 0;"> <span id="LC78" class="line" lang="plaintext"> mrs                           |      6 | {bio}                                               | </span>

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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -88,29 +92,26 @@ Last-Update: Thu, 04 Jun 2020 01:42:03 +0000</td>

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<pre style="margin: 0;"> <span id="LC92" class="line" lang="plaintext"> snap-aligner                  |      6 | {bio}                                               | </span>

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<pre style="margin: 0;"> <span id="LC93" class="line" lang="plaintext"> soapsnp                       |      6 | {bio}                                               | </span>

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<pre style="margin: 0;"> <span id="LC94" class="line" lang="plaintext"> squizz                        |      6 | {cloud,bio}                                         | </span>

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<td class="diff-line-num new new_line" data-linenumber="95" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC95" class="line" lang="plaintext"> tracetuner                    |      6 | {bio}                                               | </span>

</pre>

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<td class="diff-line-num old_line" data-linenumber="91" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

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<td class="diff-line-num new_line" data-linenumber="96" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

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<pre style="margin: 0;"> <span id="LC96" class="line" lang="plaintext"> transtermhp                   |      6 | {bio}                                               | </span>

</pre>

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<td class="diff-line-num old_line" data-linenumber="92" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

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<td class="diff-line-num new_line" data-linenumber="97" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

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<pre style="margin: 0;"> <span id="LC97" class="line" lang="plaintext"> treeview                      |      6 | {bio,bio-phylogeny}                                 | </span>

</pre>

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<td class="diff-line-num old_line" data-linenumber="93" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

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<td class="diff-line-num new_line" data-linenumber="98" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

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<pre style="margin: 0;"> <span id="LC98" class="line" lang="plaintext"> vsearch                       |      6 | {bio,covid-19}                                      | </span>

</pre>

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<td class="diff-line-num old_line" data-linenumber="94" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

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<td class="diff-line-num new_line" data-linenumber="99" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

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<pre style="margin: 0;"> <span id="LC99" class="line" lang="plaintext"> zalign                        |      6 | {bio,cloud}                                         | </span>

</pre>

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<td class="diff-line-num old_line" data-linenumber="95" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

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<td class="diff-line-num new_line" data-linenumber="100" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

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<pre style="margin: 0;"> <span id="LC100" class="line" lang="plaintext"> assemblytics                  |      5 | {bio}                                               | </span>

</pre>

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<td class="diff-line-num old_line" data-linenumber="96" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

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<td class="diff-line-num new_line" data-linenumber="101" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

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<pre style="margin: 0;"> <span id="LC101" class="line" lang="plaintext"> baitfisher                    |      5 | {bio}                                               | </span>

</pre>

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<td class="diff-line-num old old_line" data-linenumber="97" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

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<td class="diff-line-num new_line old" data-linenumber="102" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

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<pre style="margin: 0;">-<span id="LC97" class="line" lang="plaintext"> bandage                       |      5 | {bio}                                               | </span>

</pre>

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<td class="diff-line-num old_line" data-linenumber="98" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

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<td class="diff-line-num new_line" data-linenumber="102" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

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<pre style="margin: 0;"> <span id="LC102" class="line" lang="plaintext"> beast-mcmc                    |      5 | {bio,bio-phylogeny}                                 | </span>

</pre>

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<td class="diff-line-num old old_line" data-linenumber="99" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

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<td class="diff-line-num new_line old" data-linenumber="103" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

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<pre style="margin: 0;">-<span id="LC99" class="line" lang="plaintext"> biomaj3-daemon                |      5 | {bio}                                               | </span>

</pre>

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<td class="diff-line-num old_line" data-linenumber="100" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

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<td class="diff-line-num new_line" data-linenumber="103" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

103

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<pre style="margin: 0;"> <span id="LC103" class="line" lang="plaintext"> bio-rainbow                   |      5 | {bio}                                               | </span>

</pre>

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<td class="diff-line-num old_line" data-linenumber="101" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

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<td class="diff-line-num new_line" data-linenumber="104" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

104

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<pre style="margin: 0;"> <span id="LC104" class="line" lang="plaintext"> centrifuge                    |      5 | {covid-19,bio}                                      | </span>

</pre>

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<td class="diff-line-num old_line" data-linenumber="102" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

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<td class="diff-line-num new_line" data-linenumber="105" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

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<pre style="margin: 0;"> <span id="LC105" class="line" lang="plaintext"> clonalframeml                 |      5 | {covid-19,bio}                                      | </span>

</pre>

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<td class="diff-line-num old_line" data-linenumber="103" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

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<td class="diff-line-num new_line" data-linenumber="106" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

106

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<pre style="margin: 0;"> <span id="LC106" class="line" lang="plaintext"> clonalorigin                  |      5 | {bio}                                               | </span>

</pre>

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<td class="diff-line-num new old_line" data-linenumber="104" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<td class="diff-line-num new new_line" data-linenumber="107" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">

<pre style="margin: 0;">+<span id="LC107" class="line" lang="plaintext"> cluster3                      |      5 | {bio}                                               | </span>

</pre>

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<td class="diff-line-num old_line" data-linenumber="104" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

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<td class="diff-line-num new_line" data-linenumber="108" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

108

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<pre style="margin: 0;"> <span id="LC108" class="line" lang="plaintext"> dascrubber                    |      5 | {bio}                                               | </span>

</pre>

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<td class="diff-line-num old old_line" data-linenumber="105" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

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<td class="diff-line-num new_line old" data-linenumber="109" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

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<pre style="margin: 0;">-<span id="LC105" class="line" lang="plaintext"> delly                         |      5 | {covid-19,bio}                                      | </span>

</pre>

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<td class="diff-line-num old old_line" data-linenumber="106" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

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<td class="diff-line-num new_line old" data-linenumber="109" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

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<pre style="margin: 0;">-<span id="LC106" class="line" lang="plaintext"> dicompyler                    |      5 | {oncology}                                          | </span>

</pre>

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<td class="diff-line-num old_line" data-linenumber="107" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

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<td class="diff-line-num new_line" data-linenumber="109" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

109

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<pre style="margin: 0;"> <span id="LC109" class="line" lang="plaintext"> dindel                        |      5 | {bio}                                               | </span>

</pre>

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<td class="diff-line-num old old_line" data-linenumber="108" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

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<td class="diff-line-num new_line old" data-linenumber="110" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

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<pre style="margin: 0;">-<span id="LC108" class="line" lang="plaintext"> estscan                       |      5 | {bio}                                               | </span>

</pre>

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<td class="diff-line-num old_line" data-linenumber="109" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

109

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<td class="diff-line-num new_line" data-linenumber="110" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

110

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<pre style="margin: 0;"> <span id="LC110" class="line" lang="plaintext"> gasic                         |      5 | {bio,cloud}                                         | </span>

</pre>

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<pre style="margin: 0;">+<span id="LC111" class="line" lang="plaintext"> ghmm                          |      5 | {bio}                                               | </span>

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<pre style="margin: 0;"> <span id="LC112" class="line" lang="plaintext"> harvest-tools                 |      5 | {bio}                                               | </span>

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<pre style="margin: 0;"> <span id="LC113" class="line" lang="plaintext"> ipig                          |      5 | {bio}                                               | </span>

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<pre style="margin: 0;"> <span id="LC114" class="line" lang="plaintext"> jellyfish1                    |      5 | {bio}                                               | </span>

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<pre style="margin: 0;">-<span id="LC113" class="line" lang="plaintext"> lagan                         |      5 | {bio}                                               | </span>

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<pre style="margin: 0;"> <span id="LC115" class="line" lang="plaintext"> libncl                        |      5 | {bio}                                               | </span>

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<pre style="margin: 0;"> <span id="LC116" class="line" lang="plaintext"> microbegps                    |      5 | {bio}                                               | </span>

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<pre style="margin: 0;"> <span id="LC117" class="line" lang="plaintext"> mlv-smile                     |      5 | {cloud,bio}                                         | </span>

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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -132,14 +133,17 @@ Last-Update: Thu, 04 Jun 2020 01:42:03 +0000</td>

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<pre style="margin: 0;"> <span id="LC133" class="line" lang="plaintext"> scythe                        |      5 | {bio}                                               | </span>

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<pre style="margin: 0;"> <span id="LC134" class="line" lang="plaintext"> sga                           |      5 | {bio}                                               | </span>

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<pre style="margin: 0;"> <span id="LC135" class="line" lang="plaintext"> spread-phy                    |      5 | {bio,bio-phylogeny}                                 | </span>

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<pre style="margin: 0;">-<span id="LC135" class="line" lang="plaintext"> tracetuner                    |      5 | {bio}                                               | </span>

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<pre style="margin: 0;"> <span id="LC136" class="line" lang="plaintext"> yaha                          |      5 | {bio}                                               | </span>

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<pre style="margin: 0;"> <span id="LC137" class="line" lang="plaintext"> bart-view                     |      4 | {imaging}                                           | </span>

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<td class="diff-line-num new new_line" data-linenumber="138" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC138" class="line" lang="plaintext"> beast2-mcmc                   |      4 | {bio}                                               | </span>

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<td class="diff-line-num new new_line" data-linenumber="139" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC139" class="line" lang="plaintext"> blasr                         |      4 | {bio,bio-ngs}                                       | </span>

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<pre style="margin: 0;"> <span id="LC140" class="line" lang="plaintext"> canu                          |      4 | {bio}                                               | </span>

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<pre style="margin: 0;">+<span id="LC141" class="line" lang="plaintext"> dicompyler                    |      4 | {oncology}                                          | </span>

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<pre style="margin: 0;"> <span id="LC142" class="line" lang="plaintext"> dwgsim                        |      4 | {bio}                                               | </span>

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<pre style="margin: 0;">+<span id="LC143" class="line" lang="plaintext"> elph                          |      4 | {bio}                                               | </span>

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<pre style="margin: 0;"> <span id="LC144" class="line" lang="plaintext"> fastml                        |      4 | {bio}                                               | </span>

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<pre style="margin: 0;"> <span id="LC145" class="line" lang="plaintext"> fsm-lite                      |      4 | {bio}                                               | </span>

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<pre style="margin: 0;">-<span id="LC142" class="line" lang="plaintext"> <span class="idiff left right">ghmm </span>                         |      4 | {bio}                                               | </span>

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<pre style="margin: 0;">+<span id="LC146" class="line" lang="plaintext"> <span class="idiff left right">hinge</span>                         |      4 | {bio}                                               | </span>

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<pre style="margin: 0;"> <span id="LC147" class="line" lang="plaintext"> jaligner                      |      4 | {bio}                                               | </span>

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<pre style="margin: 0;"> <span id="LC148" class="line" lang="plaintext"> jmodeltest                    |      4 | {bio-phylogeny,bio}                                 | </span>

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<pre style="margin: 0;"> <span id="LC149" class="line" lang="plaintext"> lamarc                        |      4 | {bio}                                               | </span>

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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -150,15 +154,22 @@ Last-Update: Thu, 04 Jun 2020 01:42:03 +0000</td>

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<pre style="margin: 0;"> <span id="LC154" class="line" lang="plaintext"> mauve-aligner                 |      4 | {bio}                                               | </span>

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<pre style="margin: 0;"> <span id="LC155" class="line" lang="plaintext"> mhap                          |      4 | {bio-ngs,bio}                                       | </span>

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<pre style="margin: 0;"> <span id="LC156" class="line" lang="plaintext"> mptp                          |      4 | {bio}                                               | </span>

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<pre style="margin: 0;">+<span id="LC157" class="line" lang="plaintext"> pal2nal                       |      4 | {bio}                                               | </span>

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<pre style="margin: 0;"> <span id="LC158" class="line" lang="plaintext"> patman                        |      4 | {bio}                                               | </span>

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<pre style="margin: 0;">+<span id="LC159" class="line" lang="plaintext"> pbdagcon                      |      4 | {bio}                                               | </span>

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<pre style="margin: 0;"> <span id="LC160" class="line" lang="plaintext"> phipack                       |      4 | {bio}                                               | </span>

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<pre style="margin: 0;">-<span id="LC155" class="line" lang="plaintext"> poretools                     |      4 | {bio}                                               | </span>

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<td class="diff-line-num new new_line" data-linenumber="161" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC161" class="line" lang="plaintext"> pilon                         |      4 | {bio}                                               | </span>

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<pre style="margin: 0;">+<span id="LC162" class="line" lang="plaintext"> plasmidseeker                 |      4 | {bio}                                               | </span>

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<pre style="margin: 0;"> <span id="LC163" class="line" lang="plaintext"> prottest                      |      4 | {bio-phylogeny,bio}                                 | </span>

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<pre style="margin: 0;"> <span id="LC164" class="line" lang="plaintext"> qcumber                       |      4 | {bio}                                               | </span>

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<pre style="margin: 0;"> <span id="LC165" class="line" lang="plaintext"> qrisk2                        |      4 | {practice}                                          | </span>

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<pre style="margin: 0;"> <span id="LC166" class="line" lang="plaintext"> rambo-k                       |      4 | {bio}                                               | </span>

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<pre style="margin: 0;">+<span id="LC167" class="line" lang="plaintext"> rampler                       |      4 | {bio}                                               | </span>

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<pre style="margin: 0;"> <span id="LC168" class="line" lang="plaintext"> rdp-classifier                |      4 | {bio}                                               | </span>

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<pre style="margin: 0;">+<span id="LC169" class="line" lang="plaintext"> relion                        |      4 | {bio}                                               | </span>

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<pre style="margin: 0;">+<span id="LC170" class="line" lang="plaintext"> samblaster                    |      4 | {covid-19,bio}                                      | </span>

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<pre style="margin: 0;"> <span id="LC171" class="line" lang="plaintext"> scrm                          |      4 | {bio}                                               | </span>

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<pre style="margin: 0;">+<span id="LC172" class="line" lang="plaintext"> segemehl                      |      4 | {bio}                                               | </span>

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<pre style="margin: 0;"> <span id="LC173" class="line" lang="plaintext"> seqmagick                     |      4 | {covid-19,bio}                                      | </span>

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<pre style="margin: 0;"> <span id="LC174" class="line" lang="plaintext"> seqsero                       |      4 | {bio}                                               | </span>

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<pre style="margin: 0;"> <span id="LC175" class="line" lang="plaintext"> seqtools                      |      4 | {bio}                                               | </span>

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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -167,47 +178,31 @@ Last-Update: Thu, 04 Jun 2020 01:42:03 +0000</td>

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<pre style="margin: 0;"> <span id="LC178" class="line" lang="plaintext"> sprai                         |      4 | {bio}                                               | </span>

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<pre style="margin: 0;"> <span id="LC179" class="line" lang="plaintext"> suitename                     |      4 | {bio}                                               | </span>

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<pre style="margin: 0;"> <span id="LC180" class="line" lang="plaintext"> surankco                      |      4 | {bio}                                               | </span>

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<pre style="margin: 0;">+<span id="LC181" class="line" lang="plaintext"> sweed                         |      4 | {bio}                                               | </span>

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<pre style="margin: 0;"> <span id="LC182" class="line" lang="plaintext"> tnseq-transit                 |      4 | {covid-19,bio}                                      | </span>

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<pre style="margin: 0;">+<span id="LC183" class="line" lang="plaintext"> trace2dbest                   |      4 | {bio}                                               | </span>

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<pre style="margin: 0;">+<span id="LC184" class="line" lang="plaintext"> tvc                           |      4 | {bio}                                               | </span>

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<pre style="margin: 0;"> <span id="LC185" class="line" lang="plaintext"> velvetoptimiser               |      4 | {bio}                                               | </span>

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<pre style="margin: 0;">-<span id="LC172" class="line" lang="plaintext"> beast2-mcmc                   |      3 | {bio}                                               | </span>

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<pre style="margin: 0;">-<span id="LC173" class="line" lang="plaintext"> blasr                         |      3 | {bio,bio-ngs}                                       | </span>

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<pre style="margin: 0;">-<span id="LC174" class="line" lang="plaintext"> elph                          |      3 | {bio}                                               | </span>

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<pre style="margin: 0;"> <span id="LC186" class="line" lang="plaintext"> getdata                       |      3 | {bio}                                               | </span>

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<td class="diff-line-num old old_line" data-linenumber="176" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

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<pre style="margin: 0;">-<span id="LC176" class="line" lang="plaintext"> hinge                         |      3 | {bio}                                               | </span>

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<td class="diff-line-num old_line" data-linenumber="177" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

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<pre style="margin: 0;"> <span id="LC187" class="line" lang="plaintext"> logol                         |      3 | {bio}                                               | </span>

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<td class="diff-line-num old_line" data-linenumber="178" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

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<td class="diff-line-num new_line" data-linenumber="188" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

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<pre style="margin: 0;"> <span id="LC188" class="line" lang="plaintext"> metaphlan2                    |      3 | {bio}                                               | </span>

</pre>

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<td class="diff-line-num old_line" data-linenumber="179" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

179

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<td class="diff-line-num new_line" data-linenumber="189" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

189

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<pre style="margin: 0;"> <span id="LC189" class="line" lang="plaintext"> nanook                        |      3 | {bio}                                               | </span>

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<td class="diff-line-num new old_line" data-linenumber="180" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<td class="diff-line-num new new_line" data-linenumber="190" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC190" class="line" lang="plaintext"> ngs-sdk                       |      3 | {bio-dev}                                           | </span>

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<pre style="margin: 0;"> <span id="LC191" class="line" lang="plaintext"> openslide                     |      3 | {imaging-dev}                                       | </span>

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<td class="diff-line-num old old_line" data-linenumber="181" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

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<td class="diff-line-num new_line old" data-linenumber="192" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

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<pre style="margin: 0;">-<span id="LC181" class="line" lang="plaintext"> pal2nal                       |      3 | {bio}                                               | </span>

</pre>

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<td class="diff-line-num new_line old" data-linenumber="192" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

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<pre style="margin: 0;">-<span id="LC182" class="line" lang="plaintext"> pbdagcon                      |      3 | {bio}                                               | </span>

</pre>

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<td class="diff-line-num old old_line" data-linenumber="183" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

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<pre style="margin: 0;">-<span id="LC183" class="line" lang="plaintext"> pilon                         |      3 | {bio}                                               | </span>

</pre>

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<td class="diff-line-num old old_line" data-linenumber="184" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

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<td class="diff-line-num new_line old" data-linenumber="192" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

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<pre style="margin: 0;">-<span id="LC184" class="line" lang="plaintext"> plasmidseeker                 |      3 | {bio}                                               | </span>

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<td class="diff-line-num old old_line" data-linenumber="185" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

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<pre style="margin: 0;">-<span id="LC185" class="line" lang="plaintext"> rampler                       |      3 | {bio}                                               | </span>

</pre>

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<td class="diff-line-num old old_line" data-linenumber="186" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

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<pre style="margin: 0;">-<span id="LC186" class="line" lang="plaintext"> relion                        |      3 | {bio}                                               | </span>

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<td class="diff-line-num old old_line" data-linenumber="187" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

187

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<td class="diff-line-num new_line old" data-linenumber="192" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

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<pre style="margin: 0;">-<span id="LC187" class="line" lang="plaintext"> samblaster                    |      3 | {covid-19,bio}                                      | </span>

</pre>

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<td class="diff-line-num old old_line" data-linenumber="188" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

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<td class="diff-line-num new_line old" data-linenumber="192" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

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<pre style="margin: 0;">-<span id="LC188" class="line" lang="plaintext"> segemehl                      |      3 | {bio}                                               | </span>

</pre>

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<td class="diff-line-num old old_line" data-linenumber="189" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

189

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<td class="diff-line-num new_line old" data-linenumber="192" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

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<pre style="margin: 0;">-<span id="LC189" class="line" lang="plaintext"> sweed                         |      3 | {bio}                                               | </span>

</pre>

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<td class="diff-line-num old old_line" data-linenumber="190" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

190

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<td class="diff-line-num new_line old" data-linenumber="192" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

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<pre style="margin: 0;">-<span id="LC190" class="line" lang="plaintext"> trace2dbest                   |      3 | {bio}                                               | </span>

</pre>

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<td class="diff-line-num old old_line" data-linenumber="191" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

191

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<pre style="margin: 0;">-<span id="LC191" class="line" lang="plaintext"> tvc                           |      3 | {bio}                                               | </span>

</pre>

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<td class="diff-line-num old_line" data-linenumber="192" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

192

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<td class="diff-line-num new_line" data-linenumber="192" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

192

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<pre style="margin: 0;"> <span id="LC192" class="line" lang="plaintext"> biosig4c++                    |      2 | {physics,imaging-dev}                               | </span>

</pre>

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<td class="diff-line-num old_line" data-linenumber="193" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

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<td class="diff-line-num new_line" data-linenumber="193" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

193

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<pre style="margin: 0;"> <span id="LC193" class="line" lang="plaintext"> blimps                        |      2 | {bio}                                               | </span>

</pre>

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<td class="diff-line-num old_line" data-linenumber="194" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

194

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<td class="diff-line-num new_line" data-linenumber="194" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

194

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<pre style="margin: 0;"> <span id="LC194" class="line" lang="plaintext"> busco                         |      2 | {covid-19,bio}                                      | </span>

</pre>

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<pre style="margin: 0;">-<span id="LC195" class="line" lang="plaintext"> emboss-explorer               |      2 | {bio}                                               | </span>

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<td class="diff-line-num old_line" data-linenumber="196" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

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<pre style="margin: 0;"> <span id="LC195" class="line" lang="plaintext"> libbio-mage-utils-perl        |      2 | {bio-dev}                                           | </span>

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<td class="diff-line-num old_line" data-linenumber="197" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

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<pre style="margin: 0;"> <span id="LC196" class="line" lang="plaintext"> libsbml                       |      2 | {bio-dev}                                           | </span>

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<td class="diff-line-num old_line" data-linenumber="198" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

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<pre style="margin: 0;"> <span id="LC197" class="line" lang="plaintext"> mencal                        |      2 | {tools}                                             | </span>

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<pre style="margin: 0;">-<span id="LC199" class="line" lang="plaintext"> ngs-sdk                       |      2 | {bio-dev}                                           | </span>

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<pre style="margin: 0;"> <span id="LC198" class="line" lang="plaintext"> papyrus                       |      2 | {imaging-dev}                                       | </span>

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<td class="diff-line-num old_line" data-linenumber="201" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

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<td class="diff-line-num new_line" data-linenumber="199" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

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<pre style="margin: 0;"> <span id="LC199" class="line" lang="plaintext"> relion                        |      2 | {bio}                                               | </span>

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<pre style="margin: 0;"> <span id="LC200" class="line" lang="plaintext"> sift                          |      2 | {bio}                                               | </span>

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<pre style="margin: 0;">-<span id="LC203" class="line" lang="plaintext"> stringtie                     |      2 | {bio,covid-19}                                      | </span>

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<td class="diff-line-num old_line" data-linenumber="204" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

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<pre style="margin: 0;"> <span id="LC201" class="line" lang="plaintext"> acedb                         |      1 | {cloud,bio}                                         | </span>

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<pre style="margin: 0;">-<span id="LC205" class="line" lang="plaintext"> atropos                       |      1 | {bio}                                               | </span>

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<pre style="margin: 0;"> <span id="LC202" class="line" lang="plaintext"> ctn                           |      1 | {imaging-dev}                                       | </span>

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<td class="diff-line-num old_line" data-linenumber="207" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

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<pre style="margin: 0;"> <span id="LC203" class="line" lang="plaintext"> embassy-phylip                |      1 | {cloud,bio}                                         | </span>

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<td class="diff-line-num new new_line" data-linenumber="204" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC204" class="line" lang="plaintext"> emboss-explorer               |      1 | {bio}                                               | </span>

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<pre style="margin: 0;"> <span id="LC205" class="line" lang="plaintext"> gatb-core                     |      1 | {bio-dev}                                           | </span>

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<pre style="margin: 0;">-<span id="LC209" class="line" lang="plaintext"> kma                           |      1 | {bio}                                               | </span>

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<pre style="margin: 0;">-<span id="LC210" class="line" lang="plaintext"> kmerresistance                |      1 | {bio}                                               | </span>

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<pre style="margin: 0;"> <span id="LC206" class="line" lang="plaintext"> libchado-perl                 |      1 | {bio-dev}                                           | </span>

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<pre style="margin: 0;"> <span id="LC207" class="line" lang="plaintext"> libctapimkt                   |      1 | {practice}                                          | </span>

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<pre style="margin: 0;"> <span id="LC208" class="line" lang="plaintext"> libmialm                      |      1 | {imaging-dev}                                       | </span>

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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="219" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>

<td class="diff-line-num unfold js-unfold new_line" data-linenumber="214" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>

<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -219,15 +214,13 @@ Last-Update: Thu, 04 Jun 2020 01:42:03 +0000</td>

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<pre style="margin: 0;"> <span id="LC214" class="line" lang="plaintext"> python-py2bit                 |      1 | {bio,bio-dev}                                       | </span>

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<pre style="margin: 0;"> <span id="LC215" class="line" lang="plaintext"> python-scitrack               |      1 | {covid-19}                                          | </span>

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<pre style="margin: 0;"> <span id="LC216" class="line" lang="plaintext"> relion                        |      1 | {bio}                                               | </span>

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<pre style="margin: 0;">-<span id="LC222" class="line" lang="plaintext"> samtools-legacy               |      1 | {bio-dev}                                           | </span>

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<pre style="margin: 0;"> <span id="LC217" class="line" lang="plaintext"> seqan                         |      1 | {bio-dev}                                           | </span>

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<pre style="margin: 0;"> <span id="LC218" class="line" lang="plaintext"> simpleitk                     |      1 | {imaging-dev}                                       | </span>

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<pre style="margin: 0;">-<span id="LC225" class="line" lang="plaintext"> skesa                         |      1 | {bio}                                               | </span>

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<pre style="margin: 0;">-<span id="LC226" class="line" lang="plaintext"> spaln                         |      1 | {bio,covid-19}                                      | </span>

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<pre style="margin: 0;"> <span id="LC219" class="line" lang="plaintext"> srf                           |      1 | {bio-dev}                                           | </span>

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<pre style="margin: 0;">-<span id="LC228" class="line" lang="plaintext"> <span class="idiff left right">varscan                       |      1 | {covid-19,bio</span>}                                      | </span>

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<pre style="margin: 0;">+<span id="LC220" class="line" lang="plaintext"> <span class="idiff left right">stringtie                     |      1 | {bio,covid-19</span>}                                      | </span>

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<pre style="margin: 0;"> <span id="LC221" class="line" lang="plaintext"> volpack                       |      1 | {imaging-dev}                                       | </span>

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<pre style="margin: 0;"> <span id="LC222" class="line" lang="plaintext"> wtdbg2                        |      1 | {covid-19}                                          | </span>

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<pre style="margin: 0;">+<span id="LC223" class="line" lang="plaintext"> atropos                       |      0 | {bio}                                               | </span>

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<pre style="margin: 0;"> <span id="LC224" class="line" lang="plaintext"> augur                         |      0 | {bio,covid-19}                                      | </span>

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<pre style="margin: 0;"> <span id="LC225" class="line" lang="plaintext"> bambamc                       |      0 | {bio-dev}                                           | </span>

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<pre style="margin: 0;"> <span id="LC226" class="line" lang="plaintext"> bbmap                         |      0 | {covid-19}                                          | </span>

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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -241,6 +234,8 @@ Last-Update: Thu, 04 Jun 2020 01:42:03 +0000</td>

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<pre style="margin: 0;"> <span id="LC234" class="line" lang="plaintext"> fis-gtm                       |      0 | {his}                                               | </span>

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<pre style="margin: 0;"> <span id="LC235" class="line" lang="plaintext"> htscodecs                     |      0 | {covid-19,bio-dev}                                  | </span>

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<pre style="margin: 0;"> <span id="LC236" class="line" lang="plaintext"> ivar                          |      0 | {covid-19}                                          | </span>

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<pre style="margin: 0;">+<span id="LC237" class="line" lang="plaintext"> kma                           |      0 | {bio}                                               | </span>

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<pre style="margin: 0;">+<span id="LC238" class="line" lang="plaintext"> kmerresistance                |      0 | {bio}                                               | </span>

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<pre style="margin: 0;"> <span id="LC239" class="line" lang="plaintext"> libbigwig                     |      0 | {bio-dev}                                           | </span>

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<pre style="margin: 0;"> <span id="LC240" class="line" lang="plaintext"> libbiod                       |      0 | {bio-dev}                                           | </span>

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<pre style="margin: 0;"> <span id="LC241" class="line" lang="plaintext"> libbioparser-dev              |      0 | {bio-dev}                                           | </span>

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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -280,19 +275,23 @@ Last-Update: Thu, 04 Jun 2020 01:42:03 +0000</td>

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<pre style="margin: 0;"> <span id="LC275" class="line" lang="plaintext"> pbseqlib                      |      0 | {bio-dev}                                           | </span>

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<pre style="margin: 0;"> <span id="LC276" class="line" lang="plaintext"> pilercr                       |      0 | {bio}                                               | </span>

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<pre style="margin: 0;"> <span id="LC277" class="line" lang="plaintext"> pycoqc                        |      0 | {covid-19,bio}                                      | </span>

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<pre style="margin: 0;">-<span id="LC283" class="line" lang="plaintext"> relion                        |      0 | {bio}                                               | </span>

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<pre style="margin: 0;">+<span id="LC279" class="line" lang="plaintext"> relion                        |      0 | {bio}                                               | </span>

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<pre style="margin: 0;"> <span id="LC280" class="line" lang="plaintext"> sambamba                      |      0 | {bio}                                               | </span>

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<pre style="margin: 0;">+<span id="LC281" class="line" lang="plaintext"> samtools-legacy               |      0 | {bio-dev}                                           | </span>

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<pre style="margin: 0;"> <span id="LC282" class="line" lang="plaintext"> sbmltoolbox                   |      0 | {bio-dev}                                           | </span>

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<pre style="margin: 0;"> <span id="LC283" class="line" lang="plaintext"> seq-gen                       |      0 | {bio}                                               | </span>

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<pre style="margin: 0;">+<span id="LC284" class="line" lang="plaintext"> skesa                         |      0 | {bio}                                               | </span>

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<pre style="margin: 0;"> <span id="LC285" class="line" lang="plaintext"> skewer                        |      0 | {bio}                                               | </span>

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<pre style="margin: 0;"> <span id="LC286" class="line" lang="plaintext"> smrtanalysis                  |      0 | {covid-19,bio}                                      | </span>

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<pre style="margin: 0;"> <span id="LC287" class="line" lang="plaintext"> solvate                       |      0 | {bio}                                               | </span>

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<pre style="margin: 0;">+<span id="LC288" class="line" lang="plaintext"> spaln                         |      0 | {bio,covid-19}                                      | </span>

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<pre style="margin: 0;"> <span id="LC289" class="line" lang="plaintext"> thesias                       |      0 | {bio,covid-19}                                      | </span>

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<pre style="margin: 0;"> <span id="LC290" class="line" lang="plaintext"> varna                         |      0 | {bio}                                               | </span>

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<pre style="margin: 0;">+<span id="LC291" class="line" lang="plaintext"> varscan                       |      0 | {covid-19,bio}                                      | </span>

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<pre style="margin: 0;"> <span id="LC292" class="line" lang="plaintext"> vtk-dicom                     |      0 | {imaging-dev}                                       | </span>

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<pre style="margin: 0;"> <span id="LC293" class="line" lang="plaintext"> bustools                      |     -1 | {covid-19,bio}                                      | </span>

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<pre style="margin: 0;"> <span id="LC294" class="line" lang="plaintext"> cat-bat                       |     -1 | {covid-19,bio}                                      | </span>

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<pre style="margin: 0;"> <span id="LC295" class="line" lang="plaintext"> flash                         |     -1 | {bio,covid-19}                                      | </span>

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<pre style="margin: 0;">-<span id="LC297" class="line" lang="plaintext">(32<span class="idiff left right">1</span> rows)</span>

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<pre style="margin: 0;">+<span id="LC296" class="line" lang="plaintext">(32<span class="idiff left right">0</span> rows)</span>

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<pre style="margin: 0;"> <span id="LC297" class="line" lang="plaintext"></span></pre>

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<a href="https://salsa.debian.org/med-team/community/helper-scripts/-/commit/ec855685bab1e1faaaa7ea021455f177d6dd3551#2654e31016bcee9bbe05d462121706cc8ed368af"><strong>outdated_med-packages.txt</strong></a>

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