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GitLab
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<h3>
Michael R. Crusoe pushed to branch master
at <a href="https://salsa.debian.org/med-team/pufferfish">Debian Med / pufferfish</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/pufferfish/-/commit/ffd46ebf2ed269b355507d6753f6d394eaea75e7">ffd46ebf</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2020-06-05T08:47:09+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: New upstream version
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/pufferfish/-/commit/edb5bd06fdf6b5ff7d59afbcaf73f83ef2835a9f">edb5bd06</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2020-06-05T08:47:10+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 1.2.1</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/pufferfish/-/commit/a1b24853d951ef4ac91aad75ce6f5a36d5a6b737">a1b24853</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2020-06-05T08:47:15+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Update upstream source from tag 'upstream/1.2.1'
Update to upstream version '1.2.1'
with Debian dir e1d32dbdc20905f7d3c3daa6f03cf66792b35b58</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/pufferfish/-/commit/0f15a119bde0832a443d3bef83505b50f80a99b2">0f15a119</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2020-06-05T08:56:17+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">refresh patches
</pre>
</li>
</ul>
<h4>30 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#38df0d119dd4bbf9324a89a5240408ff37d2bfb3">
.drone/build.sh
</a>
</li>
<li class="file-stats">
<a href="#c3e1c46777ef2b428ebc48df86a47195d0175835">
<span class="new-file">
+
.github/workflows/cpp.yml
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</li>
<li class="file-stats">
<a href="#9a2aa4db38d3115ed60da621e012c0efc0172aae">
CMakeLists.txt
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<li class="file-stats">
<a href="#0834ae016f8fea5cff771880c0be1d55299732ff">
<span class="new-file">
+
CODE_OF_CONDUCT.md
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</li>
<li class="file-stats">
<a href="#8ec9a00bfd09b3190ac6b22251dbb1aa95a0579d">
README.md
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<li class="file-stats">
<a href="#c5fd3201494e82cf94e6a681cdc535b306134e1a">
<span class="deleted-file">
−
config.json
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<li class="file-stats">
<a href="#34ffb03041dc818ba71da0518ec52a0134f543f8">
<span class="new-file">
+
current_version.txt
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</li>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
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</li>
<li class="file-stats">
<a href="#a5d7130a87d819a848732eeb001d32bed52f914f">
debian/patches/use-debian-libs
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</li>
<li class="file-stats">
<a href="#cc6a6d19171186278ade37cf5755726b4b8a5ee7">
<span class="deleted-file">
−
estimate.sh
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</li>
<li class="file-stats">
<a href="#e952533a8649087ea19c6d870618ddf1c3246c28">
external/twopaco/common/junctionapi/junctionapi.h
</a>
</li>
<li class="file-stats">
<a href="#d8dca347f0ae86365ea1dfa5480535c53c9a2aaa">
external/twopaco/common/streamfastaparser.cpp
</a>
</li>
<li class="file-stats">
<a href="#73474fc150a5bd793b772889a4008de8deed28bd">
external/twopaco/graphconstructor/assemblyedgeconstructor.h
</a>
</li>
<li class="file-stats">
<a href="#6af4ec6636075b28016f0c084607d9f5d9469e13">
external/twopaco/graphconstructor/bifurcationstorage.h
</a>
</li>
<li class="file-stats">
<a href="#d87d6538fd4fe79f99df3f74f7628fd9726d86d6">
external/twopaco/graphconstructor/candidateoccurence.h
</a>
</li>
<li class="file-stats">
<a href="#755eebce9660dedb03c759b44f067c66c10e3df2">
external/twopaco/graphconstructor/common.h
</a>
</li>
<li class="file-stats">
<a href="#9106fae6d51ba5d4612e34c617aef82ffbd40431">
external/twopaco/graphconstructor/concurrentbitvector.cpp
</a>
</li>
<li class="file-stats">
<a href="#bb62bb742fe316d9c9288a8a94476d13a1c65878">
external/twopaco/graphconstructor/concurrentbitvector.h
</a>
</li>
<li class="file-stats">
<a href="#6ea24f75e6a5ed07c0f1c9ed9f194d975ecde90d">
external/twopaco/graphconstructor/constructor.cpp
</a>
</li>
<li class="file-stats">
<a href="#0844d6d21cae299e1f129f5605291f173e5e49aa">
external/twopaco/graphconstructor/test.cpp
</a>
</li>
<li class="file-stats">
<a href="#3f70f6535a7a22e0456d8ec2364a83653fa2560a">
external/twopaco/graphconstructor/vertexenumerator.cpp
</a>
</li>
<li class="file-stats">
<a href="#71942d08824dde385d53b63b7d3c7313e5d3aa3d">
external/twopaco/graphconstructor/vertexenumerator.h
</a>
</li>
<li class="file-stats">
<a href="#ec9ac3a5a0bbbb674b7db72d082fb4d19b3b32d3">
external/twopaco/graphdump/compact_vector/compact_iterator.hpp
</a>
</li>
<li class="file-stats">
<a href="#0cdcd8b6fa9cad7b7edf84337624bd68723d9a99">
external/twopaco/graphdump/compact_vector/compact_vector.hpp
</a>
</li>
<li class="file-stats">
<a href="#123308db098484ef297114614710aacf20e0d971">
external/twopaco/graphdump/graphdump.cpp
</a>
</li>
<li class="file-stats">
<a href="#c1a540cdfa755e5829e6e18f1f800bdb75d90d52">
external/twopaco/graphdump/binaryWriter.h
→
external/twopaco/graphdump/graphdumpBinaryWriter.hpp
</a>
</li>
<li class="file-stats">
<a href="#e246b7a1c95906b59ca509ef776a45d2fb355183">
include/BooPHF.hpp
</a>
</li>
<li class="file-stats">
<a href="#c92fe97bfcf70e719e41bcb995080af63080e6ab">
include/CanonicalKmer.hpp
</a>
</li>
<li class="file-stats">
<a href="#f46f3adfc4612060db21de5f61d5e5797a5188a6">
include/Kmer.hpp
</a>
</li>
<li class="file-stats">
<a href="#55b80417ada337567eab3c468442b3f6adecfa14">
include/MemChainer.hpp
</a>
</li>
</ul>
<h5>The diff was not included because it is too large.</h5>
</div>
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