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<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/med-team/community/helper-scripts">Debian Med / community / helper-scripts</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/community/helper-scripts/-/commit/42cd63253390e74538b6d9032ed4f690ebc5d145">42cd6325</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-06-07T13:45:19+00:00</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">automatic update
</pre>
</li>
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<h4>2 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#f6d55d24085decec06151dd27f30199089d856ca">
debian-med-tests.txt
</a>
</li>
<li class="file-stats">
<a href="#2654e31016bcee9bbe05d462121706cc8ed368af">
outdated_med-packages.txt
</a>
</li>
</ul>
<h4>Changes:</h4>
<li id="f6d55d24085decec06151dd27f30199089d856ca">
<a href="https://salsa.debian.org/med-team/community/helper-scripts/-/commit/42cd63253390e74538b6d9032ed4f690ebc5d145#f6d55d24085decec06151dd27f30199089d856ca"><strong>debian-med-tests.txt</strong></a>
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="plaintext">Last-Update: Sun, 07 Jun 2020 <span class="idiff left right">01</span>:42:03 +0000</span>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">Last-Update: Sun, 07 Jun 2020 <span class="idiff left right">13</span>:42:03 +0000</span>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext"> Source | Vote | Tasks | Tags </span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext">-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------</span>
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<pre style="margin: 0;">-<span id="LC5" class="line" lang="plaintext"> dcmtk | 18<span class="idiff left right">6 | {imaging,covid-19</span>} | </span>
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<pre style="margin: 0;">-<span id="LC6" class="line" lang="plaintext"> orthanc | 91 | {imaging,<span class="idiff left right">practice,covid-19</span>} | </span>
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<pre style="margin: 0;">-<span id="LC7" class="line" lang="plaintext"> gdcm | 5<span class="idiff left right">5</span> | {imaging-dev} | </span>
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<pre style="margin: 0;">-<span id="LC8" class="line" lang="plaintext"> orthanc-wsi | 4<span class="idiff left right">3 | {laboratory,practice,imaging,his,oncology,covid-19</span>} | </span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext"> dcmtk | 18<span class="idiff left right">7 | {covid-19,imaging</span>} | </span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext"> orthanc | 91 | {imaging,<span class="idiff left right">covid-19,practice</span>} | </span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext"> gdcm | 5<span class="idiff left right">4</span> | {imaging-dev} | </span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext"> orthanc-wsi | 4<span class="idiff left right">2 | {covid-19,his,laboratory,practice,imaging,oncology</span>} | </span>
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="plaintext"> htsjdk | 30 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="plaintext"> dcm2niix | 29 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="plaintext"> dicom3tools | 29 | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC12" class="line" lang="plaintext"> dicomscope | 26 | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC13" class="line" lang="plaintext"> gdcm | 19 | {covid-19,imaging} | </span>
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="plaintext"> dicomscope | 27 | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="plaintext"> gdcm | 20 | {imaging,covid-19} | </span>
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="plaintext"> gnumed-server | 19 | {practice,covid-19} | </span>
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<pre style="margin: 0;"> <span id="LC15" class="line" lang="plaintext"> minc-tools | 18 | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC15" class="line" lang="plaintext"> gnumed-server | 17 | {covid-19,practice} | </span>
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<pre style="margin: 0;"> <span id="LC16" class="line" lang="plaintext"> insighttoolkit4 | 17 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC17" class="line" lang="plaintext"> ngs-sdk | 16 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC18" class="line" lang="plaintext"> invesalius | 15 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC19" class="line" lang="plaintext"> plastimatch | 14 | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC20" class="line" lang="plaintext"> vtk-dicom | 14 | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC21" class="line" lang="plaintext"> king | 13 | {typesetting,imaging} | </span>
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<pre style="margin: 0;">+<span id="LC20" class="line" lang="plaintext"> king | 13 | {imaging,typesetting} | </span>
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<pre style="margin: 0;"> <span id="LC21" class="line" lang="plaintext"> pixelmed | 13 | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC22" class="line" lang="plaintext"> vtk-dicom | 13 | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC23" class="line" lang="plaintext"> adun.app | 12 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC24" class="line" lang="plaintext"> gdcm | 12 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC25" class="line" lang="plaintext"> openslide | 12 | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC25" class="line" lang="plaintext"> adun.app | 11 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC26" class="line" lang="plaintext"> biosig4c++ | 11 | {physics,imaging} | </span>
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<pre style="margin: 0;">-<span id="LC27" class="line" lang="plaintext"> obitools | 11 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC27" class="line" lang="plaintext"> stacks | 11 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC28" class="line" lang="plaintext"> obitools | 10 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC29" class="line" lang="plaintext"> biojava-live | 8 | {bio-dev} | </span>
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<pre style="margin: 0;">-<span id="LC30" class="line" lang="plaintext"> <span class="idiff left right">ngs-sdk</span> | 8 | {bio-dev} | </span>
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<pre style="margin: 0;">+<span id="LC30" class="line" lang="plaintext"> <span class="idiff left right">jebl2 </span> | 8 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC31" class="line" lang="plaintext"> psychopy | 8 | {psychology} | </span>
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<pre style="margin: 0;"> <span id="LC32" class="line" lang="plaintext"> radiant | 8 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC33" class="line" lang="plaintext"> biomaj3-cli | 7 | {cloud} | </span>
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<pre style="margin: 0;">-<span id="LC34" class="line" lang="plaintext"> ea-utils | 7 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC34" class="line" lang="plaintext"> ecopcr | 7 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC35" class="line" lang="plaintext"> fastlink | 7 | {bio,cloud} | </span>
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<pre style="margin: 0;">-<span id="LC37" class="line" lang="plaintext"> <span class="idiff left right">jebl2 | 7 | {bio-dev}</span> | </span>
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<pre style="margin: 0;">+<span id="LC36" class="line" lang="plaintext"> <span class="idiff left right">indelible | 7 | {bio} </span> | </span>
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<pre style="margin: 0;"> <span id="LC37" class="line" lang="plaintext"> librg-utils-perl | 7 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC39" class="line" lang="plaintext"> mipe | 7 | {<span class="idiff left right">cloud,bio</span>} | </span>
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<pre style="margin: 0;">+<span id="LC38" class="line" lang="plaintext"> mipe | 7 | {<span class="idiff left right">bio,cloud</span>} | </span>
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<pre style="margin: 0;"> <span id="LC39" class="line" lang="plaintext"> ncbi-seg | 7 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC41" class="line" lang="plaintext"> orthanc-webviewer | 7 | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC42" class="line" lang="plaintext"> pymia | 7 | {imaging-dev} | </span>
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<pre style="margin: 0;">+<span id="LC40" class="line" lang="plaintext"> ngs-sdk | 7 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC41" class="line" lang="plaintext"> sibsim4 | 7 | {bio,cloud} | </span>
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<pre style="margin: 0;"> <span id="LC42" class="line" lang="plaintext"> alter-sequence-alignment | 6 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC45" class="line" lang="plaintext"> ampliconnoise | 6 | {<span class="idiff left right">cloud,bio</span>} | </span>
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<pre style="margin: 0;">-<span id="LC46" class="line" lang="plaintext"> arden | 6 | {<span class="idiff left right">bio,cloud</span>} | </span>
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<pre style="margin: 0;">+<span id="LC43" class="line" lang="plaintext"> ampliconnoise | 6 | {<span class="idiff left right">bio,cloud</span>} | </span>
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<pre style="margin: 0;">+<span id="LC44" class="line" lang="plaintext"> arden | 6 | {<span class="idiff left right">cloud,bio</span>} | </span>
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<pre style="margin: 0;"> <span id="LC45" class="line" lang="plaintext"> bio-tradis | 6 | {bio,bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC46" class="line" lang="plaintext"> bppsuite | 6 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC47" class="line" lang="plaintext"> cluster3 | 6 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC48" class="line" lang="plaintext"> ea-utils | 6 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC49" class="line" lang="plaintext"> elastix | 6 | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC50" class="line" lang="plaintext"> embassy-domainatrix | 6 | {<span class="idiff left right">bio,cloud</span>} | </span>
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<pre style="margin: 0;">+<span id="LC50" class="line" lang="plaintext"> embassy-domainatrix | 6 | {<span class="idiff left right">cloud,bio</span>} | </span>
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<pre style="margin: 0;"> <span id="LC51" class="line" lang="plaintext"> embassy-domsearch | 6 | {cloud,bio} | </span>
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<pre style="margin: 0;">-<span id="LC52" class="line" lang="plaintext"> indelible | 6 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC52" class="line" lang="plaintext"> libminc | 6 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC53" class="line" lang="plaintext"> maqview | 6 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC54" class="line" lang="plaintext"> melting | 6 | {cloud,bio} | </span>
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<pre style="margin: 0;">-<span id="LC56" class="line" lang="plaintext"> mrs | 6 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC57" class="line" lang="plaintext"> orthanc-dicomweb | 6 | {covid-19,imaging} | </span>
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<pre style="margin: 0;">-<span id="LC58" class="line" lang="plaintext"> orthanc-mysql | 6 | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC55" class="line" lang="plaintext"> orthanc-webviewer | 6 | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC56" class="line" lang="plaintext"> phyutility | 6 | {bio,cloud} | </span>
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<pre style="margin: 0;"> <span id="LC57" class="line" lang="plaintext"> piler | 6 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC58" class="line" lang="plaintext"> sickle | 6 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC61" class="line" lang="plaintext"> sigma-align | 6 | {<span class="idiff left right">bio,bio-phylogeny,cloud</span>} | </span>
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<pre style="margin: 0;">+<span id="LC59" class="line" lang="plaintext"> sigma-align | 6 | {<span class="idiff left right">cloud,bio-phylogeny,bio</span>} | </span>
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<pre style="margin: 0;"> <span id="LC60" class="line" lang="plaintext"> staden | 6 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC63" class="line" lang="plaintext"> abacas | 5 | {bio,covid-19} | </span>
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<pre style="margin: 0;">+<span id="LC61" class="line" lang="plaintext"> treeview | 6 | {bio,bio-phylogeny} | </span>
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<pre style="margin: 0;">+<span id="LC62" class="line" lang="plaintext"> abacas | 5 | {covid-19,bio} | </span>
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<pre style="margin: 0;"> <span id="LC63" class="line" lang="plaintext"> anfo | 5 | {bio,cloud} | </span>
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<pre style="margin: 0;"> <span id="LC64" class="line" lang="plaintext"> bandage | 5 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC65" class="line" lang="plaintext"> beads | 5 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC66" class="line" lang="plaintext"> biomaj3-daemon | 5 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC67" class="line" lang="plaintext"> bitseq | 5 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC68" class="line" lang="plaintext"> brig | 5 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC70" class="line" lang="plaintext"> cluster3 | 5 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC71" class="line" lang="plaintext"> daligner | 5 | {bio,bio-ngs} | </span>
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<pre style="margin: 0;">+<span id="LC69" class="line" lang="plaintext"> daligner | 5 | {bio-ngs,bio} | </span>
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<pre style="margin: 0;"> <span id="LC70" class="line" lang="plaintext"> dazzdb | 5 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC73" class="line" lang="plaintext"> delly | 5 | {<span class="idiff left right">covid-19,bio</span>} | </span>
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<pre style="margin: 0;">+<span id="LC71" class="line" lang="plaintext"> delly | 5 | {<span class="idiff left right">bio,covid-19</span>} | </span>
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<pre style="margin: 0;"> <span id="LC72" class="line" lang="plaintext"> edtsurf | 5 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC73" class="line" lang="plaintext"> embassy-domalign | 5 | {cloud,bio} | </span>
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<pre style="margin: 0;"> <span id="LC74" class="line" lang="plaintext"> estscan | 5 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC75" class="line" lang="plaintext"> gatb-core | 5 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC76" class="line" lang="plaintext"> king-probe | 5 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC77" class="line" lang="plaintext"> lagan | 5 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC80" class="line" lang="plaintext"> mapsembler2 | 5 | {bio,cloud} | </span>
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<pre style="margin: 0;">+<span id="LC78" class="line" lang="plaintext"> mapsembler2 | 5 | {cloud,bio} | </span>
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<pre style="margin: 0;">+<span id="LC79" class="line" lang="plaintext"> mrs | 5 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC80" class="line" lang="plaintext"> neobio | 5 | {bio,cloud} | </span>
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<pre style="margin: 0;"> <span id="LC81" class="line" lang="plaintext"> nutsqlite | 5 | {tools} | </span>
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<pre style="margin: 0;">-<span id="LC83" class="line" lang="plaintext"> orthanc-postgresql | 5 | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC84" class="line" lang="plaintext"> paraclu | 5 | {bio,cloud} | </span>
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<pre style="margin: 0;">+<span id="LC82" class="line" lang="plaintext"> orthanc-dicomweb | 5 | {covid-19,imaging} | </span>
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<pre style="margin: 0;">+<span id="LC83" class="line" lang="plaintext"> orthanc-mysql | 5 | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC84" class="line" lang="plaintext"> paraclu | 5 | {cloud,bio} | </span>
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<pre style="margin: 0;"> <span id="LC85" class="line" lang="plaintext"> phast | 5 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC86" class="line" lang="plaintext"> phyutility | 5 | {cloud,bio} | </span>
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<pre style="margin: 0;">-<span id="LC87" class="line" lang="plaintext"> prime-phylo | 5 | {cloud,bio} | </span>
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<pre style="margin: 0;">-<span id="LC88" class="line" lang="plaintext"> probabel | 5 | {cloud,bio} | </span>
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<pre style="margin: 0;">+<span id="LC86" class="line" lang="plaintext"> prime-phylo | 5 | {bio,cloud} | </span>
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<pre style="margin: 0;">+<span id="LC87" class="line" lang="plaintext"> probabel | 5 | {bio,cloud} | </span>
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<pre style="margin: 0;"> <span id="LC88" class="line" lang="plaintext"> pscan-tfbs | 5 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC89" class="line" lang="plaintext"> pymia | 5 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC90" class="line" lang="plaintext"> rtax | 5 | {bio,cloud} | </span>
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<pre style="margin: 0;"> <span id="LC91" class="line" lang="plaintext"> saint | 5 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC92" class="line" lang="plaintext"> seqtools | 5 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC93" class="line" lang="plaintext"> snap-aligner | 5 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC94" class="line" lang="plaintext"> soapsnp | 5 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC95" class="line" lang="plaintext"> spread-phy | 5 | {bio,bio-phylogeny} | </span>
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<pre style="margin: 0;"> <span id="LC96" class="line" lang="plaintext"> squizz | 5 | {bio,cloud} | </span>
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<pre style="margin: 0;"> <span id="LC97" class="line" lang="plaintext"> tracetuner | 5 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC98" class="line" lang="plaintext"> transtermhp | 5 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC98" class="line" lang="plaintext"> treeview | 5 | {bio-phylogeny,bio} | </span>
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<pre style="margin: 0;"> <span id="LC99" class="line" lang="plaintext"> vsearch | 5 | {covid-19,bio} | </span>
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<pre style="margin: 0;"> <span id="LC100" class="line" lang="plaintext"> zalign | 5 | {bio,cloud} | </span>
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<pre style="margin: 0;"> <span id="LC101" class="line" lang="plaintext"> assemblytics | 4 | {bio} | </span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="109" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -109,8 +109,8 @@ Last-Update: Sun, 07 Jun 2020 01:42:03 +0000</td>
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<pre style="margin: 0;"> <span id="LC109" class="line" lang="plaintext"> dascrubber | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC110" class="line" lang="plaintext"> dicompyler | 4 | {oncology} | </span>
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<pre style="margin: 0;"> <span id="LC111" class="line" lang="plaintext"> dindel | 4 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC112" class="line" lang="plaintext"> dwgsim | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC112" class="line" lang="plaintext"> gasic | 4 | {cloud,bio} | </span>
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<pre style="margin: 0;">+<span id="LC113" class="line" lang="plaintext"> getdata | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC114" class="line" lang="plaintext"> ghmm | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC115" class="line" lang="plaintext"> harvest-tools | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC116" class="line" lang="plaintext"> ipig | 4 | {bio} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -118,9 +118,10 @@ Last-Update: Sun, 07 Jun 2020 01:42:03 +0000</td>
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<pre style="margin: 0;"> <span id="LC118" class="line" lang="plaintext"> libdivsufsort | 4 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC119" class="line" lang="plaintext"> libncl | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC120" class="line" lang="plaintext"> microbegps | 4 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC121" class="line" lang="plaintext"> mlv-smile | 4 | {<span class="idiff left right">bio,cloud</span>} | </span>
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<pre style="margin: 0;">+<span id="LC121" class="line" lang="plaintext"> mlv-smile | 4 | {<span class="idiff left right">cloud,bio</span>} | </span>
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<pre style="margin: 0;"> <span id="LC122" class="line" lang="plaintext"> murasaki | 4 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC123" class="line" lang="plaintext"> perm | 4 | {bio,cloud} | </span>
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<pre style="margin: 0;">+<span id="LC123" class="line" lang="plaintext"> orthanc-postgresql | 4 | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC124" class="line" lang="plaintext"> perm | 4 | {cloud,bio} | </span>
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<pre style="margin: 0;"> <span id="LC125" class="line" lang="plaintext"> phybin | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC126" class="line" lang="plaintext"> placnet | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC127" class="line" lang="plaintext"> predictprotein | 4 | {bio} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -132,29 +133,28 @@ Last-Update: Sun, 07 Jun 2020 01:42:03 +0000</td>
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<pre style="margin: 0;"> <span id="LC133" class="line" lang="plaintext"> repeatmasker-recon | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC134" class="line" lang="plaintext"> roguenarok | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC135" class="line" lang="plaintext"> runcircos-gui | 4 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC135" class="line" lang="plaintext"> salmon | 4 | {bio,covid-19} | </span>
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<pre style="margin: 0;"> <span id="LC136" class="line" lang="plaintext"> scythe | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC137" class="line" lang="plaintext"> seqsero | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC138" class="line" lang="plaintext"> sga | 4 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC139" class="line" lang="plaintext"> spread-phy | 4 | {bio-phylogeny,bio} | </span>
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<pre style="margin: 0;"> <span id="LC139" class="line" lang="plaintext"> tnseq-transit | 4 | {bio,covid-19} | </span>
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<pre style="margin: 0;"> <span id="LC140" class="line" lang="plaintext"> yaha | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC141" class="line" lang="plaintext"> beast2-mcmc | 3 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC142" class="line" lang="plaintext"> blasr | 3 | {bio-ngs,bio} | </span>
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<pre style="margin: 0;"> <span id="LC143" class="line" lang="plaintext"> canu | 3 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC144" class="line" lang="plaintext"> dwgsim | 3 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC145" class="line" lang="plaintext"> elph | 3 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC146" class="line" lang="plaintext"> fastml | 3 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC147" class="line" lang="plaintext"> fsm-lite | 3 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC148" class="line" lang="plaintext"> getdata | 3 | {bio} | </span>
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149
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148
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<pre style="margin: 0;"> <span id="LC148" class="line" lang="plaintext"> hinge | 3 | {bio} | </span>
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149
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<pre style="margin: 0;"> <span id="LC149" class="line" lang="plaintext"> jaligner | 3 | {bio} | </span>
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150
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<pre style="margin: 0;"> <span id="LC150" class="line" lang="plaintext"> jmodeltest | 3 | {bio,bio-phylogeny} | </span>
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151
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<pre style="margin: 0;"> <span id="LC151" class="line" lang="plaintext"> lamarc | 3 | {bio} | </span>
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152
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<pre style="margin: 0;"> <span id="LC152" class="line" lang="plaintext"> libpal-java | 3 | {bio-dev} | </span>
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153
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<pre style="margin: 0;"> <span id="LC153" class="line" lang="plaintext"> librdp-taxonomy-tree-java | 3 | {bio-dev} | </span>
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154
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<pre style="margin: 0;">+<span id="LC154" class="line" lang="plaintext"> libsbml | 3 | {bio-dev} | </span>
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155
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155
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<pre style="margin: 0;"> <span id="LC155" class="line" lang="plaintext"> maffilter | 3 | {bio} | </span>
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156
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<pre style="margin: 0;"> <span id="LC156" class="line" lang="plaintext"> mauve-aligner | 3 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC157" class="line" lang="plaintext"> mhap | 3 | {bio<span class="idiff left right">-ngs,bio</span>} | </span>
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<pre style="margin: 0;">+<span id="LC157" class="line" lang="plaintext"> mhap | 3 | {bio<span class="idiff left right">,bio-ngs</span>} | </span>
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<pre style="margin: 0;"> <span id="LC158" class="line" lang="plaintext"> mptp | 3 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC159" class="line" lang="plaintext"> openslide | 3 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC160" class="line" lang="plaintext"> pal2nal | 3 | {bio} | </span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="163" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -163,14 +163,15 @@ Last-Update: Sun, 07 Jun 2020 01:42:03 +0000</td>
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<pre style="margin: 0;"> <span id="LC163" class="line" lang="plaintext"> phipack | 3 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC164" class="line" lang="plaintext"> pilon | 3 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC165" class="line" lang="plaintext"> plasmidseeker | 3 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC166" class="line" lang="plaintext"> proalign | 3 | {bio<span class="idiff left right">-phylogeny,bio</span>} | </span>
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<pre style="margin: 0;">+<span id="LC166" class="line" lang="plaintext"> proalign | 3 | {bio<span class="idiff left right">,bio-phylogeny</span>} | </span>
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<pre style="margin: 0;"> <span id="LC167" class="line" lang="plaintext"> prottest | 3 | {bio-phylogeny,bio} | </span>
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<pre style="margin: 0;"> <span id="LC168" class="line" lang="plaintext"> qcumber | 3 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC169" class="line" lang="plaintext"> rambo-k | 3 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC170" class="line" lang="plaintext"> rampler | 3 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC171" class="line" lang="plaintext"> rdp-classifier | 3 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC172" class="line" lang="plaintext"> relion | 3 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC173" class="line" lang="plaintext"> samblaster | 3 | {covid-19,bio} | </span>
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<pre style="margin: 0;">+<span id="LC173" class="line" lang="plaintext"> salmon | 3 | {covid-19,bio} | </span>
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<pre style="margin: 0;">+<span id="LC174" class="line" lang="plaintext"> samblaster | 3 | {bio,covid-19} | </span>
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<pre style="margin: 0;"> <span id="LC175" class="line" lang="plaintext"> scrm | 3 | {bio} | </span>
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176
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<pre style="margin: 0;"> <span id="LC176" class="line" lang="plaintext"> segemehl | 3 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC177" class="line" lang="plaintext"> seqmagick | 3 | {covid-19,bio} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -184,21 +185,18 @@ Last-Update: Sun, 07 Jun 2020 01:42:03 +0000</td>
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<pre style="margin: 0;"> <span id="LC185" class="line" lang="plaintext"> trace2dbest | 3 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC186" class="line" lang="plaintext"> tvc | 3 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC187" class="line" lang="plaintext"> velvetoptimiser | 3 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC187" class="line" lang="plaintext"> biosig4c++ | 2 | {imaging-dev,physics} | </span>
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<pre style="margin: 0;"> <span id="LC188" class="line" lang="plaintext"> biosig4c++ | 2 | {physics,imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC189" class="line" lang="plaintext"> blimps | 2 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC190" class="line" lang="plaintext"> busco | 2 | {<span class="idiff left right">bio,covid-19</span>} | </span>
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<pre style="margin: 0;">+<span id="LC190" class="line" lang="plaintext"> busco | 2 | {<span class="idiff left right">covid-19,bio</span>} | </span>
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<pre style="margin: 0;"> <span id="LC191" class="line" lang="plaintext"> libbio-mage-utils-perl | 2 | {bio-dev} | </span>
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<pre style="margin: 0;">-<span id="LC192" class="line" lang="plaintext"> libsbml | 2 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC192" class="line" lang="plaintext"> logol | 2 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC193" class="line" lang="plaintext"> mencal | 2 | {tools} | </span>
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<pre style="margin: 0;"> <span id="LC194" class="line" lang="plaintext"> metaphlan2 | 2 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC195" class="line" lang="plaintext"> nanook | 2 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC197" class="line" lang="plaintext"> ngs-sdk | 2 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC196" class="line" lang="plaintext"> papyrus | 2 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC197" class="line" lang="plaintext"> relion | 2 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC198" class="line" lang="plaintext"> sift | 2 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC201" class="line" lang="plaintext"> acedb | 1 | {<span class="idiff left right">cloud,bio</span>} | </span>
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<pre style="margin: 0;">+<span id="LC199" class="line" lang="plaintext"> acedb | 1 | {<span class="idiff left right">bio,cloud</span>} | </span>
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202
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200
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<pre style="margin: 0;"> <span id="LC200" class="line" lang="plaintext"> ctn | 1 | {imaging-dev} | </span>
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201
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<pre style="margin: 0;"> <span id="LC201" class="line" lang="plaintext"> embassy-phylip | 1 | {cloud,bio} | </span>
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202
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<pre style="margin: 0;"> <span id="LC202" class="line" lang="plaintext"> emboss-explorer | 1 | {bio} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -209,8 +207,9 @@ Last-Update: Sun, 07 Jun 2020 01:42:03 +0000</td>
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207
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<pre style="margin: 0;"> <span id="LC207" class="line" lang="plaintext"> libvistaio | 1 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC208" class="line" lang="plaintext"> libxdf | 1 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC209" class="line" lang="plaintext"> murasaki | 1 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC210" class="line" lang="plaintext"> ngs-sdk | 1 | {bio-dev} | </span>
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211
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<pre style="margin: 0;"> <span id="LC211" class="line" lang="plaintext"> opensurgsim | 1 | {imaging-dev} | </span>
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<pre style="margin: 0;">-<span id="LC213" class="line" lang="plaintext"> oscar | 1 | {<span class="idiff left right">tools,data,practice</span>} | </span>
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<pre style="margin: 0;">+<span id="LC212" class="line" lang="plaintext"> oscar | 1 | {<span class="idiff left right">data,practice,tools</span>} | </span>
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<pre style="margin: 0;"> <span id="LC213" class="line" lang="plaintext"> python-scitrack | 1 | {covid-19} | </span>
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<pre style="margin: 0;"> <span id="LC214" class="line" lang="plaintext"> relion | 1 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC215" class="line" lang="plaintext"> seqan | 1 | {bio-dev} | </span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="227" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -227,10 +226,10 @@ Last-Update: Sun, 07 Jun 2020 01:42:03 +0000</td>
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<pre style="margin: 0;"> <span id="LC226" class="line" lang="plaintext"> biosyntax | 0 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC227" class="line" lang="plaintext"> camp | 0 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC228" class="line" lang="plaintext"> cufflinks | 0 | {bio,cloud} | </span>
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<pre style="margin: 0;">-<span id="LC230" class="line" lang="plaintext"> drop-seq | 0 | {<span class="idiff left right">bio,covid-19</span>} | </span>
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229
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<pre style="margin: 0;">+<span id="LC229" class="line" lang="plaintext"> drop-seq | 0 | {<span class="idiff left right">covid-19,bio</span>} | </span>
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231
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<pre style="margin: 0;"> <span id="LC230" class="line" lang="plaintext"> emmax | 0 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC231" class="line" lang="plaintext"> fis-gtm | 0 | {his} | </span>
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<pre style="margin: 0;">-<span id="LC233" class="line" lang="plaintext"> htscodecs | 0 | {<span class="idiff left right">bio-dev,covid-19</span>} | </span>
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<pre style="margin: 0;">+<span id="LC232" class="line" lang="plaintext"> htscodecs | 0 | {<span class="idiff left right">covid-19,bio-dev</span>} | </span>
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<pre style="margin: 0;"> <span id="LC233" class="line" lang="plaintext"> ivar | 0 | {covid-19} | </span>
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234
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<pre style="margin: 0;"> <span id="LC234" class="line" lang="plaintext"> kma | 0 | {bio} | </span>
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235
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<pre style="margin: 0;"> <span id="LC235" class="line" lang="plaintext"> kmerresistance | 0 | {bio} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -248,7 +247,7 @@ Last-Update: Sun, 07 Jun 2020 01:42:03 +0000</td>
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<pre style="margin: 0;"> <span id="LC247" class="line" lang="plaintext"> libgenome | 0 | {bio-dev} | </span>
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248
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<pre style="margin: 0;"> <span id="LC248" class="line" lang="plaintext"> libgkarrays | 0 | {bio-dev} | </span>
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249
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<pre style="margin: 0;"> <span id="LC249" class="line" lang="plaintext"> libhmsbeagle | 0 | {bio-dev} | </span>
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<pre style="margin: 0;">-<span id="LC251" class="line" lang="plaintext"> libics | 0 | {<span class="idiff left right">covid-19,imaging-dev</span>} | </span>
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<pre style="margin: 0;">+<span id="LC250" class="line" lang="plaintext"> libics | 0 | {<span class="idiff left right">imaging-dev,covid-19</span>} | </span>
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251
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<pre style="margin: 0;"> <span id="LC251" class="line" lang="plaintext"> libjloda-java | 0 | {bio-dev} | </span>
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252
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<pre style="margin: 0;"> <span id="LC252" class="line" lang="plaintext"> libmaus2 | 0 | {bio-dev,covid-19} | </span>
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253
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<pre style="margin: 0;"> <span id="LC253" class="line" lang="plaintext"> libmems | 0 | {bio-dev} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -262,9 +261,9 @@ Last-Update: Sun, 07 Jun 2020 01:42:03 +0000</td>
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261
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<pre style="margin: 0;"> <span id="LC261" class="line" lang="plaintext"> metastudent-data | 0 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC262" class="line" lang="plaintext"> metastudent-data-2 | 0 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC263" class="line" lang="plaintext"> miaviewit | 0 | {imaging-dev} | </span>
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<pre style="margin: 0;">-<span id="LC265" class="line" lang="plaintext"> milib | 0 | {<span class="idiff left right">covid-19,bio-dev</span>} | </span>
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<pre style="margin: 0;">+<span id="LC264" class="line" lang="plaintext"> milib | 0 | {<span class="idiff left right">bio-dev,covid-19</span>} | </span>
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265
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<pre style="margin: 0;"> <span id="LC265" class="line" lang="plaintext"> mssstest | 0 | {tools} | </span>
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<pre style="margin: 0;">-<span id="LC267" class="line" lang="plaintext"> multiqc | 0 | {<span class="idiff left right">covid-19,bio</span>} | </span>
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<pre style="margin: 0;">+<span id="LC266" class="line" lang="plaintext"> multiqc | 0 | {<span class="idiff left right">bio,covid-19</span>} | </span>
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<pre style="margin: 0;"> <span id="LC267" class="line" lang="plaintext"> ncbi-vdb | 0 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC268" class="line" lang="plaintext"> opencfu | 0 | {laboratory} | </span>
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<pre style="margin: 0;"> <span id="LC269" class="line" lang="plaintext"> orthanc-imagej | 0 | {imaging} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -272,8 +271,7 @@ Last-Update: Sun, 07 Jun 2020 01:42:03 +0000</td>
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<pre style="margin: 0;"> <span id="LC271" class="line" lang="plaintext"> pbcopper | 0 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC272" class="line" lang="plaintext"> pbseqlib | 0 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC273" class="line" lang="plaintext"> pilercr | 0 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC275" class="line" lang="plaintext"> pycoqc | 0 | {bio,covid-19} | </span>
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<pre style="margin: 0;">-<span id="LC276" class="line" lang="plaintext"> python-py2bit | 0 | {bio-dev,bio} | </span>
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<pre style="margin: 0;">+<span id="LC274" class="line" lang="plaintext"> python-py2bit | 0 | {bio,bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC275" class="line" lang="plaintext"> relion | 0 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC276" class="line" lang="plaintext"> relion | 0 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC277" class="line" lang="plaintext"> sambamba | 0 | {bio} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -282,15 +280,16 @@ Last-Update: Sun, 07 Jun 2020 01:42:03 +0000</td>
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<pre style="margin: 0;"> <span id="LC280" class="line" lang="plaintext"> seq-gen | 0 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC281" class="line" lang="plaintext"> skesa | 0 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC282" class="line" lang="plaintext"> skewer | 0 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC285" class="line" lang="plaintext"> smrtanalysis | 0 | {<span class="idiff left right">covid-19,bio</span>} | </span>
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<pre style="margin: 0;">+<span id="LC283" class="line" lang="plaintext"> smrtanalysis | 0 | {<span class="idiff left right">bio,covid-19</span>} | </span>
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<pre style="margin: 0;"> <span id="LC284" class="line" lang="plaintext"> spaln | 0 | {bio,covid-19} | </span>
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<pre style="margin: 0;">-<span id="LC287" class="line" lang="plaintext"> stringtie | 0 | {<span class="idiff left right">bio,covid-19</span>} | </span>
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<pre style="margin: 0;">-<span id="LC288" class="line" lang="plaintext"> thesias | 0 | {<span class="idiff left right">covid-19,bio</span>} | </span>
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<pre style="margin: 0;">+<span id="LC285" class="line" lang="plaintext"> stringtie | 0 | {<span class="idiff left right">covid-19,bio</span>} | </span>
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<pre style="margin: 0;">+<span id="LC286" class="line" lang="plaintext"> thesias | 0 | {<span class="idiff left right">bio,covid-19</span>} | </span>
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<pre style="margin: 0;"> <span id="LC287" class="line" lang="plaintext"> varna | 0 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC290" class="line" lang="plaintext"> varscan | 0 | {<span class="idiff left right">covid-19,bio</span>} | </span>
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<pre style="margin: 0;">+<span id="LC288" class="line" lang="plaintext"> varscan | 0 | {<span class="idiff left right">bio,covid-19</span>} | </span>
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<pre style="margin: 0;"> <span id="LC289" class="line" lang="plaintext"> vtk-dicom | 0 | {imaging-dev} | </span>
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<pre style="margin: 0;">-<span id="LC292" class="line" lang="plaintext"> bustools | -1 | {<span class="idiff left right">covid-19,bio</span>} | </span>
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<pre style="margin: 0;">-<span id="LC293" class="line" lang="plaintext"> cat-bat | -1 | {<span class="idiff left right">bio,covid-19</span>} | </span>
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<pre style="margin: 0;">+<span id="LC290" class="line" lang="plaintext"> bustools | -1 | {<span class="idiff left right">bio,covid-19</span>} | </span>
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<pre style="margin: 0;">+<span id="LC291" class="line" lang="plaintext"> cat-bat | -1 | {<span class="idiff left right">covid-19,bio</span>} | </span>
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<pre style="margin: 0;"> <span id="LC292" class="line" lang="plaintext"> flash | -1 | {bio,covid-19} | </span>
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<pre style="margin: 0;">-<span id="LC295" class="line" lang="plaintext">(319 rows)</span>
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<pre style="margin: 0;">+<span id="LC293" class="line" lang="plaintext"> pycoqc | -1 | {bio,covid-19} | </span>
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<pre style="margin: 0;">+<span id="LC294" class="line" lang="plaintext">(318 rows)</span>
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