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<h3>
Shayan Doust pushed to branch master
at <a href="https://salsa.debian.org/med-team/pll-modules">Debian Med / pll-modules</a>
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<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/pll-modules/-/commit/4ef8aa6e8c9634b37777e36861b27c696b34021a">4ef8aa6e</a></strong>
<div>
<span>by Shayan Doust</span>
<i>at 2020-06-08T12:22:05+01:00</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Revert commits where *-examples are compiled
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<h4>5 changed files:</h4>
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<li class="file-stats">
<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
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<li class="file-stats">
<a href="#42ccc14344cc60a43414403809abd1d0e6581179">
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+
debian/libpll-modules-examples.examples
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<li class="file-stats">
<a href="#7c4b19252b2c38d7317448e2b41fc08f35952656">
<span class="deleted-file">
−
debian/libpll-modules-examples.install
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<li class="file-stats">
<a href="#bc34014ab4b9a49dd7a27bdd8d352912607c3a96">
debian/patches/series
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<li class="file-stats">
<a href="#8756c63497c8dc39f7773438edf53b220c773f67">
debian/rules
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<h4>Changes:</h4>
<li id="58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
<a href="https://salsa.debian.org/med-team/pll-modules/-/commit/4ef8aa6e8c9634b37777e36861b27c696b34021a#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2"><strong>debian/control</strong></a>
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<td class="diff-line-num unfold js-unfold new_line" data-linenumber="39" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -39,11 +39,10 @@ Description: high level modules for the low level phylogenetic likelihood librar</td>
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<pre style="margin: 0;"> <span id="LC39" class="line" lang="plaintext"> This package contains the shared library.</span>
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<pre style="margin: 0;"> <span id="LC40" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC41" class="line" lang="plaintext">Package: libpll-modules-examples</span>
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<pre style="margin: 0;">-<span id="LC42" class="line" lang="plaintext">Architecture: any</span>
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<td class="diff-line-num old old_line" data-linenumber="43" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC43" class="line" lang="plaintext">Depends: ${shlibs:Depends},</span>
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<pre style="margin: 0;">-<span id="LC44" class="line" lang="plaintext"> ${misc:Depends}</span>
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<pre style="margin: 0;">+<span id="LC42" class="line" lang="plaintext">Architecture: all</span>
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<pre style="margin: 0;">+<span id="LC43" class="line" lang="plaintext">Depends: ${misc:Depends}</span>
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<pre style="margin: 0;"> <span id="LC44" class="line" lang="plaintext">Enhances: libpll-modules-dev</span>
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<td class="diff-line-num old old_line" data-linenumber="46" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC46" class="line" lang="plaintext">Description: example <span class="idiff left right">binaries</span> for libpll-modules-dev</span>
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<pre style="margin: 0;">+<span id="LC45" class="line" lang="plaintext">Description: example <span class="idiff left right">source</span> for libpll-modules-dev</span>
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<pre style="margin: 0;"> <span id="LC46" class="line" lang="plaintext"> This package provides high level modules for the low level phylogenetic</span>
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<pre style="margin: 0;"> <span id="LC47" class="line" lang="plaintext"> likelihood library.</span>
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<pre style="margin: 0;"> <span id="LC48" class="line" lang="plaintext"> .</span>
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<li id="42ccc14344cc60a43414403809abd1d0e6581179">
<a href="https://salsa.debian.org/med-team/pll-modules/-/commit/4ef8aa6e8c9634b37777e36861b27c696b34021a#42ccc14344cc60a43414403809abd1d0e6581179"><strong>debian/libpll-modules-examples.examples</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">examples/*</span></pre>
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<li id="7c4b19252b2c38d7317448e2b41fc08f35952656">
<a href="https://salsa.debian.org/med-team/pll-modules/-/commit/4ef8aa6e8c9634b37777e36861b27c696b34021a#7c4b19252b2c38d7317448e2b41fc08f35952656"><strong>debian/libpll-modules-examples.install</strong>
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="php"><span class="nx">examples</span><span class="o" style="font-weight: 600;">/</span><span class="nx">consensus</span><span class="o" style="font-weight: 600;">/</span><span class="nx">consensus</span> <span class="nx">usr</span><span class="o" style="font-weight: 600;">/</span><span class="nx">bin</span></span>
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<pre style="margin: 0;">-<span id="LC2" class="line" lang="php"><span class="nx">examples</span><span class="o" style="font-weight: 600;">/</span><span class="nx">rf</span><span class="o" style="font-weight: 600;">-</span><span class="nx">distance</span><span class="o" style="font-weight: 600;">/</span><span class="nx">rf</span><span class="o" style="font-weight: 600;">-</span><span class="nx">distance</span> <span class="nx">usr</span><span class="o" style="font-weight: 600;">/</span><span class="nx">bin</span></span>
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<pre style="margin: 0;">-<span id="LC3" class="line" lang="php"><span class="nx">examples</span><span class="o" style="font-weight: 600;">/</span><span class="nx">weight</span><span class="o" style="font-weight: 600;">-</span><span class="nx">consensus</span><span class="o" style="font-weight: 600;">/</span><span class="nx">weight</span><span class="o" style="font-weight: 600;">-</span><span class="nx">consensus</span> <span class="nx">usr</span><span class="o" style="font-weight: 600;">/</span><span class="nx">bin</span></span></pre>
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<li id="bc34014ab4b9a49dd7a27bdd8d352912607c3a96">
<a href="https://salsa.debian.org/med-team/pll-modules/-/commit/4ef8aa6e8c9634b37777e36861b27c696b34021a#bc34014ab4b9a49dd7a27bdd8d352912607c3a96"><strong>debian/patches/series</strong></a>
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="plaintext">modify_examples_makefiles.patch</span>
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1
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<pre style="margin: 0;"> <span id="LC1" class="line" lang="plaintext">2to3.patch</span>
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3
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2
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="plaintext">modify_test_makefile.patch</span></pre>
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<li id="8756c63497c8dc39f7773438edf53b220c773f67">
<a href="https://salsa.debian.org/med-team/pll-modules/-/commit/4ef8aa6e8c9634b37777e36861b27c696b34021a#8756c63497c8dc39f7773438edf53b220c773f67"><strong>debian/rules</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -16,14 +16,6 @@ INSTALLATION_PREFIX = "/usr"</td>
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16
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16
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<pre style="margin: 0;"> <span id="LC16" class="line" lang="plaintext">override_dh_auto_configure:</span>
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<pre style="margin: 0;"> <span id="LC17" class="line" lang="plaintext"> dh_auto_configure -- --prefix $(INSTALLATION_PREFIX) CPPFLAGS="-I/usr/include/libpll" LDFLAGS="-L/usr/include/libpll"</span>
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18
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18
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<pre style="margin: 0;"> <span id="LC18" class="line" lang="plaintext"></span>
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19
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<pre style="margin: 0;">-<span id="LC19" class="line" lang="plaintext">override_dh_auto_build:</span>
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20
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<pre style="margin: 0;">-<span id="LC20" class="line" lang="plaintext"> dh_auto_build</span>
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<pre style="margin: 0;">-<span id="LC21" class="line" lang="plaintext"> # header files and compiled libraries needed within debian/tmp/ for example binaries so install these first</span>
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22
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<pre style="margin: 0;">-<span id="LC22" class="line" lang="plaintext"> dh_auto_install</span>
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23
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<pre style="margin: 0;">-<span id="LC23" class="line" lang="plaintext"> cd examples/consensus && $(MAKE)</span>
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24
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<pre style="margin: 0;">-<span id="LC24" class="line" lang="plaintext"> cd examples/rf-distance && $(MAKE)</span>
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25
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<pre style="margin: 0;">-<span id="LC25" class="line" lang="plaintext"> cd examples/weight-consensus && $(MAKE)</span>
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26
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<pre style="margin: 0;">-<span id="LC26" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC19" class="line" lang="plaintext">override_dh_missing:</span>
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28
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<pre style="margin: 0;"> <span id="LC20" class="line" lang="plaintext"> find debian/tmp -name "*.la" -delete</span>
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29
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<pre style="margin: 0;"> <span id="LC21" class="line" lang="plaintext"> dh_missing</span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="31" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="23" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -31,6 +23,6 @@ override_dh_missing:</td>
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<pre style="margin: 0;"> <span id="LC23" class="line" lang="plaintext">override_dh_auto_test:</span>
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<pre style="margin: 0;"> <span id="LC24" class="line" lang="plaintext">ifeq (,$(filter nocheck,$(DEB_BUILD_OPTIONS)))</span>
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<pre style="margin: 0;"> <span id="LC25" class="line" lang="plaintext"> ## header files are needed in one place so do dh_auto_install right now</span>
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34
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<pre style="margin: 0;">-<span id="LC34" class="line" lang="plaintext"> <span class="idiff left right">#</span>dh_auto_install</span>
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<pre style="margin: 0;">+<span id="LC26" class="line" lang="plaintext"> dh_auto_install</span>
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<pre style="margin: 0;"> <span id="LC27" class="line" lang="plaintext"> cd test && $(MAKE) && python3 runtest.py</span>
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36
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<pre style="margin: 0;"> <span id="LC28" class="line" lang="plaintext">endif</span></pre>
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