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<h3>
Steffen Möller pushed to branch master
at <a href="https://salsa.debian.org/med-team/biocore-ntnu-ncls">Debian Med / biocore-ntnu-ncls</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/biocore-ntnu-ncls/-/commit/250c93cacb92349a6ce121a1a7ad04ef99522268">250c93ca</a></strong>
<div>
<span>by Steffen Möller</span>
<i>at 2020-06-14T00:36:34+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Fixed testing
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/biocore-ntnu-ncls/-/commit/ef9774f8f8e88b06842c59f82f0fe70a8e223940">ef9774f8</a></strong>
<div>
<span>by Steffen Möller</span>
<i>at 2020-06-14T01:10:56+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Removing cython-generated files from tarball
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/biocore-ntnu-ncls/-/commit/451ee7625c82d82661d62e6872a7a654a957d53a">451ee762</a></strong>
<div>
<span>by Steffen Möller</span>
<i>at 2020-06-14T01:11:29+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 0.0+git20200225.f9894b0+ds</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/biocore-ntnu-ncls/-/commit/4ec9436e0b58531107cf740d3968bec68e9dd40e">4ec9436e</a></strong>
<div>
<span>by Steffen Möller</span>
<i>at 2020-06-14T01:11:29+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Update upstream source from tag 'upstream/0.0+git20200225.f9894b0+ds'
Update to upstream version '0.0+git20200225.f9894b0+ds'
with Debian dir aa16996612f3916500ef8886acdffa8eff67fe86</pre>
</li>
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<h4>6 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#adb7f75f79e3bb85eb62912a2904c5d24af878fb">
debian/copyright
</a>
</li>
<li class="file-stats">
<a href="#8756c63497c8dc39f7773438edf53b220c773f67">
debian/rules
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<li class="file-stats">
<a href="#68ef9f98c01c7eecd4c605cc26048a06f3304b79">
debian/watch
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<li class="file-stats">
<a href="#a553993f53c6d764a3425ffab01745638b371895">
<span class="deleted-file">
−
ncls/src/fncls.c
</span>
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</li>
<li class="file-stats">
<a href="#e3784c5f3ec3707a5e6e0aee8b88fd49dac4bb82">
<span class="deleted-file">
−
ncls/src/ncls.c
</span>
</a>
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<li class="file-stats">
<a href="#500dc68e1a66a238fd530003d9176e0b9a5ae3d0">
<span class="deleted-file">
−
ncls/src/ncls32.c
</span>
</a>
</li>
</ul>
<h4>Changes:</h4>
<li id="adb7f75f79e3bb85eb62912a2904c5d24af878fb">
<a href="https://salsa.debian.org/med-team/biocore-ntnu-ncls/-/compare/dbb8cf29269dbc215f20c803fab855a6ece744f8...4ec9436e0b58531107cf740d3968bec68e9dd40e#adb7f75f79e3bb85eb62912a2904c5d24af878fb"><strong>debian/copyright</strong></a>
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<pre style="margin: 0;"> <span id="LC1" class="line" lang="plaintext">Format: https://www.debian.org/doc/packaging-manuals/copyright-format/1.0/</span>
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="plaintext">Upstream-Name: NCLS</span>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext">Source: https://github.com/biocore-ntnu/ncls</span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="plaintext">Files-Excluded:</span>
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<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext"> ncls/src/fncls.c</span>
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<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext"> ncls/src/ncls.c</span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext"> ncls/src/ncls32.c</span>
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<pre style="margin: 0;"> <span id="LC8" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="plaintext">Files: *</span>
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="plaintext">Copyright: 2019 Endre Bakken Stovner</span>
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<li id="8756c63497c8dc39f7773438edf53b220c773f67">
<a href="https://salsa.debian.org/med-team/biocore-ntnu-ncls/-/compare/dbb8cf29269dbc215f20c803fab855a6ece744f8...4ec9436e0b58531107cf740d3968bec68e9dd40e#8756c63497c8dc39f7773438edf53b220c773f67"><strong>debian/rules</strong></a>
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<td class="diff-line-num unfold js-unfold new_line" data-linenumber="2" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -2,9 +2,6 @@</td>
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="plaintext">export DH_VERBOSE = 1</span>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext">export PYBUILD_NAME=ncls</span>
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<pre style="margin: 0;">-<span id="LC5" class="line" lang="plaintext">#export PYBUILD_DISABLE=test # not quite ready</span>
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<pre style="margin: 0;">-<span id="LC6" class="line" lang="plaintext">#export PYBUILD_TEST_ARGS= -p no:cacheprovider -p no:stepwise -k 'not S3 and not rnaseq and not fusion and not srnaseq and not chipseq and not install_required and not devel and not template and not hla and not combo'</span>
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<pre style="margin: 0;">-<span id="LC7" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="plaintext">export DEB_BUILD_MAINT_OPTIONS=hardening=+all</span>
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="plaintext">%:</span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -12,17 +9,9 @@ export DEB_BUILD_MAINT_OPTIONS=hardening=+all</td>
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="plaintext">override_dh_auto_clean:</span>
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="plaintext"> dh_auto_clean</span>
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<pre style="margin: 0;">-<span id="LC15" class="line" lang="plaintext"> rm -rf ncls.egg-info/</span>
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="plaintext"> rm -rf ncls.egg-info/<span class="idiff left right"> .pytest_cache</span></span>
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<pre style="margin: 0;"> <span id="LC13" class="line" lang="plaintext"> for cfilebak in `find . -name "*.c.bak"` ; do \</span>
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<pre style="margin: 0;"> <span id="LC14" class="line" lang="plaintext"> cfile=`dirname $${cfilebak}`/`basename $${pyx} .bak` ; \</span>
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<pre style="margin: 0;"> <span id="LC15" class="line" lang="plaintext"> mv $${cfilebak} $${cfile} ; \</span>
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<pre style="margin: 0;"> <span id="LC16" class="line" lang="plaintext"> done</span>
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<pre style="margin: 0;">-<span id="LC20" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">-<span id="LC21" class="line" lang="plaintext">override_dh_auto_build:</span>
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<pre style="margin: 0;">-<span id="LC22" class="line" lang="plaintext"> for pyx in `find . -name "*.pyx"` ; do \</span>
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<pre style="margin: 0;">-<span id="LC23" class="line" lang="plaintext"> cfile=`dirname $${pyx}`/`basename $${pyx} .pyx`.c ; \</span>
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<pre style="margin: 0;">-<span id="LC24" class="line" lang="plaintext"> mv $${cfile} $${cfile}.bak ; \</span>
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<pre style="margin: 0;">-<span id="LC25" class="line" lang="plaintext"> done</span>
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<pre style="margin: 0;">-<span id="LC26" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">-<span id="LC27" class="line" lang="plaintext">override_dh_auto_test:</span>
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<pre style="margin: 0;">-<span id="LC28" class="line" lang="plaintext"> PYTHONPATH=$(CURDIR) dh_auto_test</span></pre>
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="plaintext"> rm -f ncls/src/fncls.c ncls/src/ncls.c ncls/src/ncls32.c</span></pre>
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<li id="68ef9f98c01c7eecd4c605cc26048a06f3304b79">
<a href="https://salsa.debian.org/med-team/biocore-ntnu-ncls/-/compare/dbb8cf29269dbc215f20c803fab855a6ece744f8...4ec9436e0b58531107cf740d3968bec68e9dd40e#68ef9f98c01c7eecd4c605cc26048a06f3304b79"><strong>debian/watch</strong></a>
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1
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<pre style="margin: 0;"> <span id="LC1" class="line" lang="plaintext">version=4</span>
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2
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2
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="plaintext"></span>
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3
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<pre style="margin: 0;">-<span id="LC3" class="line" lang="plaintext">opts="mode=git,pretty=0.0+git%cd.%h" \</span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext">opts="mode=git,pretty=0.0+git%cd.%h<span class="idiff left right">+ds</span>" \</span>
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4
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext"> https://github.com/biocore-ntnu/ncls HEAD</span>
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="plaintext"></span></pre>
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<li id="a553993f53c6d764a3425ffab01745638b371895">
<a href="https://salsa.debian.org/med-team/biocore-ntnu-ncls/-/compare/dbb8cf29269dbc215f20c803fab855a6ece744f8...4ec9436e0b58531107cf740d3968bec68e9dd40e#a553993f53c6d764a3425ffab01745638b371895"><strong>ncls/src/fncls.c</strong>
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<li id="e3784c5f3ec3707a5e6e0aee8b88fd49dac4bb82">
<a href="https://salsa.debian.org/med-team/biocore-ntnu-ncls/-/compare/dbb8cf29269dbc215f20c803fab855a6ece744f8...4ec9436e0b58531107cf740d3968bec68e9dd40e#e3784c5f3ec3707a5e6e0aee8b88fd49dac4bb82"><strong>ncls/src/ncls.c</strong>
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<li id="500dc68e1a66a238fd530003d9176e0b9a5ae3d0">
<a href="https://salsa.debian.org/med-team/biocore-ntnu-ncls/-/compare/dbb8cf29269dbc215f20c803fab855a6ece744f8...4ec9436e0b58531107cf740d3968bec68e9dd40e#500dc68e1a66a238fd530003d9176e0b9a5ae3d0"><strong>ncls/src/ncls32.c</strong>
deleted
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</li>
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