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<h3>
Steffen Möller pushed to branch upstream
at <a href="https://salsa.debian.org/med-team/libmaus2">Debian Med / libmaus2</a>
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<h4>
Commits:
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<ul>
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<strong><a href="https://salsa.debian.org/med-team/libmaus2/-/commit/6344920a2195175b00e0f404a255c749e608930d">6344920a</a></strong>
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<span>by Steffen Moeller</span>
<i>at 2020-06-13T20:20:17+02:00</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 2.0.722+dfsg</pre>
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<h4>8 changed files:</h4>
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<li class="file-stats">
<a href="#00fe7828d56d7a3ee4030d6cea057cf13f50e70c">
ChangeLog
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<li class="file-stats">
<a href="#87db583be5c13c1f7b3c958b10e03d67b6a2ca06">
configure.ac
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<li class="file-stats">
<a href="#67e794015a01b8816bd16290e5f8538236da8245">
src/Makefile.am
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<li class="file-stats">
<a href="#bd763f31b698f4e8a9c0b5fb6205c8f754241645">
src/libmaus2/autoarray/AutoArray.hpp
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<li class="file-stats">
<a href="#01f99a24fa1f7e8a49e87980e7fde51528e8b68c">
src/libmaus2/lcs/AlignmentTraceContainer.hpp
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<li class="file-stats">
<a href="#cf434e9f8971e193377b85dc880fa316d841b235">
src/libmaus2/lcs/NPLNoTrace.hpp
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<li class="file-stats">
<a href="#5374ee454dc400137b8de7e098cb2c3aa36d7e72">
src/libmaus2/util/ArgParser.hpp
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<li class="file-stats">
<a href="#ae16a395ee500177741524e2edb6ed451f913fa5">
<span class="new-file">
+
src/libmaus2/util/SerialiseHelper.hpp
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<h4>Changes:</h4>
<li id="00fe7828d56d7a3ee4030d6cea057cf13f50e70c">
<a href="https://salsa.debian.org/med-team/libmaus2/-/commit/6344920a2195175b00e0f404a255c749e608930d#00fe7828d56d7a3ee4030d6cea057cf13f50e70c"><strong>ChangeLog</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">libmaus2 (2.0.722-1) unstable; urgency=medium</span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="plaintext"></span>
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<td class="diff-line-num new new_line" data-linenumber="3" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext"> * make size bumping more flexible in AutoArray</span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="plaintext"> * avoid running asserts by checking parameters and throwing exception in NPLNoTrace</span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext"> -- German Tischler-Höhle <germant@miltenyibiotec.de> Wed, 10 Jun 2020 14:59:41 +0200</span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext">libmaus2 (2.0.721-1) unstable; urgency=medium</span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="plaintext"> * add getMatchOffsets variants in AlignmentTraceContainer</span>
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="plaintext"> * fix broken parsing of non value arguments in ArgParser</span>
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="plaintext"> -- German Tischler-Höhle <germant@miltenyibiotec.de> Mon, 08 Jun 2020 17:08:42 +0200</span>
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="plaintext">libmaus2 (2.0.720-1) unstable; urgency=medium</span>
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="plaintext"> * add SerialiseHelper class</span>
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<pre style="margin: 0;">+<span id="LC18" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="plaintext"> -- German Tischler-Höhle <germant@miltenyibiotec.de> Tue, 02 Jun 2020 17:13:24 +0200</span>
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<pre style="margin: 0;">+<span id="LC20" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC21" class="line" lang="plaintext">libmaus2 (2.0.719-1) unstable; urgency=medium</span>
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<pre style="margin: 0;"> <span id="LC22" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC23" class="line" lang="plaintext"> * Make separator in VCFParser::getSampleValueVectorForKey a template argument</span>
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<a href="https://salsa.debian.org/med-team/libmaus2/-/commit/6344920a2195175b00e0f404a255c749e608930d#87db583be5c13c1f7b3c958b10e03d67b6a2ca06"><strong>configure.ac</strong></a>
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1
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="plaintext">AC_INIT(libmaus2,2.0.7<span class="idiff left right">19</span>,[germant@miltnyibiotec.de],[libmaus2],[https://github.com/gt1/libmaus2])</span>
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2
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<pre style="margin: 0;">-<span id="LC2" class="line" lang="plaintext">LIBRARY_VERSION=2:7<span class="idiff left right">19</span>:0</span>
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1
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">AC_INIT(libmaus2,2.0.7<span class="idiff left right">22</span>,[germant@miltnyibiotec.de],[libmaus2],[https://github.com/gt1/libmaus2])</span>
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2
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="plaintext">LIBRARY_VERSION=2:7<span class="idiff left right">22</span>:0</span>
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3
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3
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext">AC_MSG_NOTICE([Configuring for source in directory ${srcdir}])</span>
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4
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4
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext">AC_CANONICAL_SYSTEM</span>
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5
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5
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="plaintext">AC_CANONICAL_HOST</span>
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<a href="https://salsa.debian.org/med-team/libmaus2/-/commit/6344920a2195175b00e0f404a255c749e608930d#67e794015a01b8816bd16290e5f8538236da8245"><strong>src/Makefile.am</strong></a>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="1332" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -1332,8 +1332,9 @@ libmaus2util_include_HEADERS=\</td>
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<pre style="margin: 0;"> <span id="LC1332" class="line" lang="make"> libmaus2/util/DirectoryStructure.hpp <span class="se" style="color: #d14;">\</span></span>
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<pre style="margin: 0;"> <span id="LC1333" class="line" lang="make"> libmaus2/util/StreamGetObject.hpp <span class="se" style="color: #d14;">\</span></span>
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<pre style="margin: 0;"> <span id="LC1334" class="line" lang="make"> libmaus2/util/StackTraceBufferContainer.hpp <span class="se" style="color: #d14;">\</span></span>
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<pre style="margin: 0;">-<span id="LC1335" class="line" lang="make"> libmaus2/util/StackLineTranslator.hpp</span>
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<pre style="margin: 0;">-<span id="LC1336" class="line" lang="make"></span>
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<pre style="margin: 0;">+<span id="LC1335" class="line" lang="make"> libmaus2/util/StackLineTranslator.hpp <span class="se" style="color: #d14;">\</span></span>
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<pre style="margin: 0;">+<span id="LC1336" class="line" lang="make"> libmaus2/util/SerialiseHelper.hpp</span>
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<pre style="margin: 0;">+<span id="LC1337" class="line" lang="make"> </span>
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<pre style="margin: 0;"> <span id="LC1338" class="line" lang="make"><span class="nv" style="color: #008080;">libmaus2uint_includedir</span><span class="o" style="font-weight: 600;">=</span><span class="nv" style="color: #008080;">$(includedir)</span>/libmaus2/uint</span>
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<pre style="margin: 0;"> <span id="LC1339" class="line" lang="make"><span class="nv" style="color: #008080;">libmaus2uint_include_HEADERS</span><span class="o" style="font-weight: 600;">=</span><span class="se" style="color: #d14;">\</span></span>
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1339
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<pre style="margin: 0;"> <span id="LC1340" class="line" lang="make"> libmaus2/uint/uint.hpp </span>
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<a href="https://salsa.debian.org/med-team/libmaus2/-/commit/6344920a2195175b00e0f404a255c749e608930d#bd763f31b698f4e8a9c0b5fb6205c8f754241645"><strong>src/libmaus2/autoarray/AutoArray.hpp</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -1783,31 +1783,42 @@ namespace libmaus2</td>
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1783
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<pre style="margin: 0;"> <span id="LC1783" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">return</span> <span class="n" style="color: #333;">std</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">numeric_limits</span><span class="o" style="font-weight: 600;"><</span><span class="kt" style="color: #458; font-weight: 600;">uint64_t</span><span class="o" style="font-weight: 600;">>::</span><span class="n" style="color: #333;">max</span><span class="p">();</span></span>
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<pre style="margin: 0;"> <span id="LC1784" class="line" lang="cpp"> <span class="p">}</span></span>
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<pre style="margin: 0;"> <span id="LC1785" class="line" lang="cpp"></span>
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<pre style="margin: 0;">-<span id="LC1786" class="line" lang="cpp"> <span class="kt" style="color: #458; font-weight: 600;"><span class="idiff left">void</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff right">bump</span></span><span class="p">()</span></span>
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<pre style="margin: 0;">+<span id="LC1786" class="line" lang="cpp"> <span class="k" style="font-weight: 600;"><span class="idiff left">static</span></span><span class="idiff"> </span><span class="kt" style="color: #458; font-weight: 600;"><span class="idiff">uint64_t</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff right">getDefaultBumpC</span></span><span class="p">()</span></span>
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<pre style="margin: 0;"> <span id="LC1787" class="line" lang="cpp"> <span class="p">{</span></span>
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<pre style="margin: 0;">-<span id="LC1788" class="line" lang="cpp"> <span class="kt" style="color: #458; font-weight: 600;">uint64_t</span> <span class="n" style="color: #333;">oldsize</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">size</span><span class="p">();</span></span>
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<pre style="margin: 0;">-<span id="LC1789" class="line" lang="cpp"> <span class="kt" style="color: #458; font-weight: 600;">uint64_t</span> <span class="k" style="font-weight: 600;">const</span> <span class="n" style="color: #333;">one</span> <span class="o" style="font-weight: 600;">=</span> <span class="mi" style="color: #099;">1</span><span class="p">;</span></span>
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<pre style="margin: 0;">-<span id="LC1790" class="line" lang="cpp"> <span class="kt" style="color: #458; font-weight: 600;">uint64_t</span> <span class="n" style="color: #333;">newsize</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">std</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">max</span><span class="p">(</span><span class="n" style="color: #333;">oldsize</span><span class="o" style="font-weight: 600;"><<</span><span class="mi" style="color: #099;">1</span><span class="p">,</span><span class="n" style="color: #333;">one</span><span class="p">);</span></span>
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<pre style="margin: 0;">+<span id="LC1788" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">return</span> <span class="mi" style="color: #099;">2</span><span class="p">;</span></span>
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<pre style="margin: 0;">+<span id="LC1789" class="line" lang="cpp"> <span class="p">}</span></span>
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<pre style="margin: 0;">+<span id="LC1790" class="line" lang="cpp"></span>
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<pre style="margin: 0;">+<span id="LC1791" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">static</span> <span class="kt" style="color: #458; font-weight: 600;">uint64_t</span> <span class="n" style="color: #333;">getDefaultBumpD</span><span class="p">()</span></span>
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<pre style="margin: 0;">+<span id="LC1792" class="line" lang="cpp"> <span class="p">{</span></span>
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<pre style="margin: 0;">+<span id="LC1793" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">return</span> <span class="mi" style="color: #099;">1</span><span class="p">;</span></span>
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<pre style="margin: 0;">+<span id="LC1794" class="line" lang="cpp"> <span class="p">}</span></span>
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<pre style="margin: 0;">+<span id="LC1795" class="line" lang="cpp"></span>
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<pre style="margin: 0;">+<span id="LC1796" class="line" lang="cpp"> <span class="kt" style="color: #458; font-weight: 600;">void</span> <span class="n" style="color: #333;">bump</span><span class="p">(</span><span class="kt" style="color: #458; font-weight: 600;">uint64_t</span> <span class="k" style="font-weight: 600;">const</span> <span class="n" style="color: #333;">c</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">getDefaultBumpC</span><span class="p">(),</span> <span class="kt" style="color: #458; font-weight: 600;">uint64_t</span> <span class="k" style="font-weight: 600;">const</span> <span class="n" style="color: #333;">d</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">getDefaultBumpD</span><span class="p">())</span></span>
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<pre style="margin: 0;">+<span id="LC1797" class="line" lang="cpp"> <span class="p">{</span></span>
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<pre style="margin: 0;">+<span id="LC1798" class="line" lang="cpp"> <span class="kt" style="color: #458; font-weight: 600;">uint64_t</span> <span class="k" style="font-weight: 600;">const</span> <span class="n" style="color: #333;">oldsize</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">size</span><span class="p">();</span></span>
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<pre style="margin: 0;">+<span id="LC1799" class="line" lang="cpp"> <span class="kt" style="color: #458; font-weight: 600;">uint64_t</span> <span class="k" style="font-weight: 600;">const</span> <span class="n" style="color: #333;">one</span> <span class="o" style="font-weight: 600;">=</span> <span class="mi" style="color: #099;">1</span><span class="p">;</span></span>
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<pre style="margin: 0;">+<span id="LC1800" class="line" lang="cpp"> <span class="kt" style="color: #458; font-weight: 600;">uint64_t</span> <span class="k" style="font-weight: 600;">const</span> <span class="n" style="color: #333;">nmult</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">(</span><span class="n" style="color: #333;">oldsize</span><span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">c</span><span class="p">)</span><span class="o" style="font-weight: 600;">/</span><span class="n" style="color: #333;">d</span><span class="p">;</span></span>
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<pre style="margin: 0;">+<span id="LC1801" class="line" lang="cpp"> <span class="kt" style="color: #458; font-weight: 600;">uint64_t</span> <span class="k" style="font-weight: 600;">const</span> <span class="n" style="color: #333;">newsize</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">std</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">max</span><span class="p">(</span><span class="n" style="color: #333;">nmult</span><span class="p">,</span><span class="n" style="color: #333;">oldsize</span><span class="o" style="font-weight: 600;">+</span><span class="n" style="color: #333;">one</span><span class="p">);</span></span>
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1802
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<pre style="margin: 0;"> <span id="LC1802" class="line" lang="cpp"> <span class="n" style="color: #333;">resize</span><span class="p">(</span><span class="n" style="color: #333;">newsize</span><span class="p">);</span></span>
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1792
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1803
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<pre style="margin: 0;"> <span id="LC1803" class="line" lang="cpp"> <span class="p">}</span></span>
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1793
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1804
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<pre style="margin: 0;"> <span id="LC1804" class="line" lang="cpp"></span>
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<pre style="margin: 0;">-<span id="LC1794" class="line" lang="cpp"> <span class="kt" style="color: #458; font-weight: 600;">void</span> <span class="n" style="color: #333;">ensureSize</span><span class="p">(</span><span class="kt" style="color: #458; font-weight: 600;">uint64_t</span> <span class="k" style="font-weight: 600;">const</span> <span class="n" style="color: #333;">s</span><span class="p">)</span></span>
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1805
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<pre style="margin: 0;">+<span id="LC1805" class="line" lang="cpp"> <span class="kt" style="color: #458; font-weight: 600;">void</span> <span class="n" style="color: #333;">ensureSize</span><span class="p">(</span><span class="kt" style="color: #458; font-weight: 600;">uint64_t</span> <span class="k" style="font-weight: 600;">const</span> <span class="n" style="color: #333;">s</span><span class="p"><span class="idiff left">,</span></span><span class="idiff"> </span><span class="kt" style="color: #458; font-weight: 600;"><span class="idiff">uint64_t</span></span><span class="idiff"> </span><span class="k" style="font-weight: 600;"><span class="idiff">const</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">c</span></span><span class="idiff"> </span><span class="o" style="font-weight: 600;"><span class="idiff">=</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">getDefaultBumpC</span></span><span class="p"><span class="idiff">(),</span></span><span class="idiff"> </span><span class="kt" style="color: #458; font-weight: 600;"><span class="idiff">uint64_t</span></span><span class="idiff"> </span><span class="k" style="font-weight: 600;"><span class="idiff">const</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">d</span></span><span class="idiff"> </span><span class="o" style="font-weight: 600;"><span class="idiff">=</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">getDefaultBumpD</span></span><span class="p"><span class="idiff right">()</span>)</span></span>
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1795
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1806
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<pre style="margin: 0;"> <span id="LC1806" class="line" lang="cpp"> <span class="p">{</span></span>
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1796
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1807
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<pre style="margin: 0;"> <span id="LC1807" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">while</span> <span class="p">(</span> <span class="n" style="color: #333;">size</span><span class="p">()</span> <span class="o" style="font-weight: 600;"><</span> <span class="n" style="color: #333;">s</span> <span class="p">)</span></span>
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1797
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<td class="diff-line-num new_line old" data-linenumber="1808" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC1797" class="line" lang="cpp"> <span class="n" style="color: #333;">bump</span><span class="p">();</span></span>
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<td class="diff-line-num new old_line" data-linenumber="1798" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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1808
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<pre style="margin: 0;">+<span id="LC1808" class="line" lang="cpp"> <span class="n" style="color: #333;">bump</span><span class="p">(</span><span class="n" style="color: #333;"><span class="idiff left">c</span></span><span class="p"><span class="idiff">,</span></span><span class="n" style="color: #333;"><span class="idiff right">d</span></span><span class="p">);</span></span>
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1798
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1809
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<pre style="margin: 0;"> <span id="LC1809" class="line" lang="cpp"> <span class="p">}</span></span>
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1799
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1810
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<pre style="margin: 0;"> <span id="LC1810" class="line" lang="cpp"></span>
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1800
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<pre style="margin: 0;">-<span id="LC1800" class="line" lang="cpp"> <span class="kt" style="color: #458; font-weight: 600;">void</span> <span class="n" style="color: #333;">push</span><span class="p">(</span><span class="kt" style="color: #458; font-weight: 600;">uint64_t</span> <span class="o" style="font-weight: 600;">&</span> <span class="n" style="color: #333;">o</span><span class="p">,</span> <span class="n" style="color: #333;">N</span> <span class="k" style="font-weight: 600;">const</span> <span class="o" style="font-weight: 600;">&</span> <span class="n" style="color: #333;">v</span><span class="p">)</span></span>
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1811
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<pre style="margin: 0;">+<span id="LC1811" class="line" lang="cpp"> <span class="kt" style="color: #458; font-weight: 600;">void</span> <span class="n" style="color: #333;">push</span><span class="p">(</span><span class="kt" style="color: #458; font-weight: 600;">uint64_t</span> <span class="o" style="font-weight: 600;">&</span> <span class="n" style="color: #333;">o</span><span class="p">,</span> <span class="n" style="color: #333;">N</span> <span class="k" style="font-weight: 600;">const</span> <span class="o" style="font-weight: 600;">&</span> <span class="n" style="color: #333;">v</span><span class="p"><span class="idiff left">,</span></span><span class="idiff"> </span><span class="kt" style="color: #458; font-weight: 600;"><span class="idiff">uint64_t</span></span><span class="idiff"> </span><span class="k" style="font-weight: 600;"><span class="idiff">const</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">c</span></span><span class="idiff"> </span><span class="o" style="font-weight: 600;"><span class="idiff">=</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">getDefaultBumpC</span></span><span class="p"><span class="idiff">(),</span></span><span class="idiff"> </span><span class="kt" style="color: #458; font-weight: 600;"><span class="idiff">uint64_t</span></span><span class="idiff"> </span><span class="k" style="font-weight: 600;"><span class="idiff">const</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">d</span></span><span class="idiff"> </span><span class="o" style="font-weight: 600;"><span class="idiff">=</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">getDefaultBumpD</span></span><span class="p"><span class="idiff right">()</span>)</span></span>
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1801
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1812
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<pre style="margin: 0;"> <span id="LC1812" class="line" lang="cpp"> <span class="p">{</span></span>
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1802
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<pre style="margin: 0;">-<span id="LC1802" class="line" lang="cpp"> <span class="n" style="color: #333;">ensureSize</span><span class="p">(</span><span class="n" style="color: #333;">o</span><span class="o" style="font-weight: 600;">+</span><span class="mi" style="color: #099;">1</span><span class="p">);</span></span>
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1813
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<pre style="margin: 0;">+<span id="LC1813" class="line" lang="cpp"> <span class="n" style="color: #333;">ensureSize</span><span class="p">(</span><span class="n" style="color: #333;">o</span><span class="o" style="font-weight: 600;">+</span><span class="mi" style="color: #099;">1</span><span class="p"><span class="idiff left">,</span></span><span class="n" style="color: #333;"><span class="idiff">c</span></span><span class="p"><span class="idiff">,</span></span><span class="n" style="color: #333;"><span class="idiff right">d</span></span><span class="p">);</span></span>
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1803
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1814
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<pre style="margin: 0;"> <span id="LC1814" class="line" lang="cpp"> <span class="p">(</span><span class="o" style="font-weight: 600;">*</span><span class="k" style="font-weight: 600;">this</span><span class="p">)[</span><span class="n" style="color: #333;">o</span><span class="o" style="font-weight: 600;">++</span><span class="p">]</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">v</span><span class="p">;</span></span>
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1804
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1815
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<pre style="margin: 0;"> <span id="LC1815" class="line" lang="cpp"> <span class="p">}</span></span>
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1805
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1816
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<pre style="margin: 0;"> <span id="LC1816" class="line" lang="cpp"></span>
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1806
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1817
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<pre style="margin: 0;"> <span id="LC1817" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">template</span><span class="o" style="font-weight: 600;"><</span><span class="k" style="font-weight: 600;">typename</span> <span class="nc" style="color: #458; font-weight: 600;">iterator</span><span class="p">></span></span>
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<pre style="margin: 0;">-<span id="LC1807" class="line" lang="cpp"> <span class="kt" style="color: #458; font-weight: 600;">void</span> <span class="n" style="color: #333;">push</span><span class="p">(</span><span class="kt" style="color: #458; font-weight: 600;">uint64_t</span> <span class="o" style="font-weight: 600;">&</span> <span class="n" style="color: #333;">o</span><span class="p">,</span> <span class="n" style="color: #333;">iterator</span> <span class="n" style="color: #333;">v</span><span class="p">,</span> <span class="n" style="color: #333;">iterator</span> <span class="n" style="color: #333;">ve</span><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC1818" class="line" lang="cpp"> <span class="kt" style="color: #458; font-weight: 600;">void</span> <span class="n" style="color: #333;">push</span><span class="p">(</span><span class="kt" style="color: #458; font-weight: 600;">uint64_t</span> <span class="o" style="font-weight: 600;">&</span> <span class="n" style="color: #333;">o</span><span class="p">,</span> <span class="n" style="color: #333;">iterator</span> <span class="n" style="color: #333;">v</span><span class="p">,</span> <span class="n" style="color: #333;">iterator</span> <span class="n" style="color: #333;">ve</span><span class="p"><span class="idiff left">,</span></span><span class="idiff"> </span><span class="kt" style="color: #458; font-weight: 600;"><span class="idiff">uint64_t</span></span><span class="idiff"> </span><span class="k" style="font-weight: 600;"><span class="idiff">const</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">c</span></span><span class="idiff"> </span><span class="o" style="font-weight: 600;"><span class="idiff">=</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">getDefaultBumpC</span></span><span class="p"><span class="idiff">(),</span></span><span class="idiff"> </span><span class="kt" style="color: #458; font-weight: 600;"><span class="idiff">uint64_t</span></span><span class="idiff"> </span><span class="k" style="font-weight: 600;"><span class="idiff">const</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">d</span></span><span class="idiff"> </span><span class="o" style="font-weight: 600;"><span class="idiff">=</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">getDefaultBumpD</span></span><span class="p"><span class="idiff right">()</span>)</span></span>
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1819
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<pre style="margin: 0;"> <span id="LC1819" class="line" lang="cpp"> <span class="p">{</span></span>
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1809
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1820
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<pre style="margin: 0;"> <span id="LC1820" class="line" lang="cpp"> <span class="kt" style="color: #458; font-weight: 600;">uint64_t</span> <span class="k" style="font-weight: 600;">const</span> <span class="n" style="color: #333;">n</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">ve</span><span class="o" style="font-weight: 600;">-</span><span class="n" style="color: #333;">v</span><span class="p">;</span></span>
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<pre style="margin: 0;">-<span id="LC1810" class="line" lang="cpp"> <span class="n" style="color: #333;">ensureSize</span><span class="p">(</span><span class="n" style="color: #333;">o</span><span class="o" style="font-weight: 600;">+</span><span class="n" style="color: #333;">n</span><span class="p">);</span></span>
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1821
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<pre style="margin: 0;">+<span id="LC1821" class="line" lang="cpp"> <span class="n" style="color: #333;">ensureSize</span><span class="p">(</span><span class="n" style="color: #333;">o</span><span class="o" style="font-weight: 600;">+</span><span class="n" style="color: #333;">n</span><span class="p"><span class="idiff left">,</span></span><span class="n" style="color: #333;"><span class="idiff">c</span></span><span class="p"><span class="idiff">,</span></span><span class="n" style="color: #333;"><span class="idiff right">d</span></span><span class="p">);</span></span>
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1822
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<pre style="margin: 0;"> <span id="LC1822" class="line" lang="cpp"></span>
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1823
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<pre style="margin: 0;"> <span id="LC1823" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">while</span> <span class="p">(</span> <span class="n" style="color: #333;">v</span> <span class="o" style="font-weight: 600;">!=</span> <span class="n" style="color: #333;">ve</span> <span class="p">)</span></span>
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1813
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1824
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<pre style="margin: 0;"> <span id="LC1824" class="line" lang="cpp"> <span class="p">(</span><span class="o" style="font-weight: 600;">*</span><span class="k" style="font-weight: 600;">this</span><span class="p">)[</span><span class="n" style="color: #333;">o</span><span class="o" style="font-weight: 600;">++</span><span class="p">]</span> <span class="o" style="font-weight: 600;">=</span> <span class="o" style="font-weight: 600;">*</span><span class="p">(</span><span class="n" style="color: #333;">v</span><span class="o" style="font-weight: 600;">++</span><span class="p">);</span></span>
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<a href="https://salsa.debian.org/med-team/libmaus2/-/commit/6344920a2195175b00e0f404a255c749e608930d#01f99a24fa1f7e8a49e87980e7fde51528e8b68c"><strong>src/libmaus2/lcs/AlignmentTraceContainer.hpp</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -2576,6 +2576,38 @@ namespace libmaus2</td>
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<pre style="margin: 0;"> <span id="LC2576" class="line" lang="cpp"> <span class="p">}</span></span>
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2577
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<pre style="margin: 0;"> <span id="LC2577" class="line" lang="cpp"> <span class="p">}</span></span>
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2578
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2578
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<pre style="margin: 0;"> <span id="LC2578" class="line" lang="cpp"></span>
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<pre style="margin: 0;">+<span id="LC2579" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">static</span> <span class="kt" style="color: #458; font-weight: 600;">uint64_t</span> <span class="n" style="color: #333;">getMatchOffsets</span><span class="p">(</span><span class="n" style="color: #333;">step_type</span> <span class="k" style="font-weight: 600;">const</span> <span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333;">ta</span><span class="p">,</span> <span class="n" style="color: #333;">step_type</span> <span class="k" style="font-weight: 600;">const</span> <span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333;">te</span><span class="p">,</span> <span class="n" style="color: #333;">libmaus2</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">autoarray</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">AutoArray</span> <span class="o" style="font-weight: 600;"><</span> <span class="n" style="color: #333;">std</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">pair</span><span class="o" style="font-weight: 600;"><</span><span class="kt" style="color: #458; font-weight: 600;">uint64_t</span><span class="p">,</span><span class="kt" style="color: #458; font-weight: 600;">uint64_t</span><span class="o" style="font-weight: 600;">></span> <span class="o" style="font-weight: 600;">></span> <span class="o" style="font-weight: 600;">&</span> <span class="n" style="color: #333;">R</span><span class="p">,</span> <span class="kt" style="color: #458; font-weight: 600;">uint64_t</span> <span class="k" style="font-weight: 600;">const</span> <span class="n" style="color: #333;">off_a</span> <span class="o" style="font-weight: 600;">=</span> <span class="mi" style="color: #099;">0</span><span class="p">,</span> <span class="kt" style="color: #458; font-weight: 600;">uint64_t</span> <span class="k" style="font-weight: 600;">const</span> <span class="n" style="color: #333;">off_b</span> <span class="o" style="font-weight: 600;">=</span> <span class="mi" style="color: #099;">0</span><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC2580" class="line" lang="cpp"> <span class="p">{</span></span>
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2581
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<pre style="margin: 0;">+<span id="LC2581" class="line" lang="cpp"> <span class="kt" style="color: #458; font-weight: 600;">uint64_t</span> <span class="n" style="color: #333;">o</span> <span class="o" style="font-weight: 600;">=</span> <span class="mi" style="color: #099;">0</span><span class="p">;</span></span>
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<pre style="margin: 0;">+<span id="LC2582" class="line" lang="cpp"> <span class="kt" style="color: #458; font-weight: 600;">uint64_t</span> <span class="n" style="color: #333;">apos</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">off_a</span><span class="p">,</span> <span class="n" style="color: #333;">bpos</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">off_b</span><span class="p">;</span></span>
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2583
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<pre style="margin: 0;">+<span id="LC2583" class="line" lang="cpp"></span>
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<td class="diff-line-num new new_line" data-linenumber="2584" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
2584
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<pre style="margin: 0;">+<span id="LC2584" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">for</span> <span class="p">(</span> <span class="n" style="color: #333;">step_type</span> <span class="k" style="font-weight: 600;">const</span> <span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333;">tc</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">ta</span><span class="p">;</span> <span class="n" style="color: #333;">tc</span> <span class="o" style="font-weight: 600;">!=</span> <span class="n" style="color: #333;">te</span><span class="p">;</span> <span class="o" style="font-weight: 600;">++</span><span class="n" style="color: #333;">tc</span> <span class="p">)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="2585" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
2585
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<pre style="margin: 0;">+<span id="LC2585" class="line" lang="cpp"> <span class="p">{</span></span>
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<td class="diff-line-num new old_line" data-linenumber="2579" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="2586" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
2586
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<pre style="margin: 0;">+<span id="LC2586" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">switch</span> <span class="p">(</span> <span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">tc</span> <span class="p">)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="2587" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
2587
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<pre style="margin: 0;">+<span id="LC2587" class="line" lang="cpp"> <span class="p">{</span></span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="2579" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="2588" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
2588
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<pre style="margin: 0;">+<span id="LC2588" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">case</span> <span class="n" style="color: #333;">STEP_MATCH</span><span class="p">:</span></span>
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<td class="diff-line-num new new_line" data-linenumber="2589" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
2589
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<pre style="margin: 0;">+<span id="LC2589" class="line" lang="cpp"> <span class="n" style="color: #333;">R</span><span class="p">.</span><span class="n" style="color: #333;">push</span><span class="p">(</span><span class="n" style="color: #333;">o</span><span class="p">,</span><span class="n" style="color: #333;">std</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">pair</span><span class="o" style="font-weight: 600;"><</span><span class="kt" style="color: #458; font-weight: 600;">uint64_t</span><span class="p">,</span><span class="kt" style="color: #458; font-weight: 600;">uint64_t</span><span class="o" style="font-weight: 600;">></span><span class="p">(</span><span class="n" style="color: #333;">apos</span><span class="p">,</span><span class="n" style="color: #333;">bpos</span><span class="p">));</span></span>
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<td class="diff-line-num new new_line" data-linenumber="2590" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
2590
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<pre style="margin: 0;">+<span id="LC2590" class="line" lang="cpp"> <span class="n" style="color: #333;">apos</span> <span class="o" style="font-weight: 600;">+=</span> <span class="mi" style="color: #099;">1</span><span class="p">;</span></span>
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<td class="diff-line-num new new_line" data-linenumber="2591" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
2591
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<pre style="margin: 0;">+<span id="LC2591" class="line" lang="cpp"> <span class="n" style="color: #333;">bpos</span> <span class="o" style="font-weight: 600;">+=</span> <span class="mi" style="color: #099;">1</span><span class="p">;</span></span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="2579" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="2592" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
2592
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<pre style="margin: 0;">+<span id="LC2592" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">break</span><span class="p">;</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="2593" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
2593
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<pre style="margin: 0;">+<span id="LC2593" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">case</span> <span class="n" style="color: #333;">STEP_MISMATCH</span><span class="p">:</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="2594" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
2594
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<pre style="margin: 0;">+<span id="LC2594" class="line" lang="cpp"> <span class="n" style="color: #333;">apos</span> <span class="o" style="font-weight: 600;">+=</span> <span class="mi" style="color: #099;">1</span><span class="p">;</span></span>
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<td class="diff-line-num new new_line" data-linenumber="2595" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
2595
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<pre style="margin: 0;">+<span id="LC2595" class="line" lang="cpp"> <span class="n" style="color: #333;">bpos</span> <span class="o" style="font-weight: 600;">+=</span> <span class="mi" style="color: #099;">1</span><span class="p">;</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="2596" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
2596
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<pre style="margin: 0;">+<span id="LC2596" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">break</span><span class="p">;</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="2597" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
2597
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<pre style="margin: 0;">+<span id="LC2597" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">case</span> <span class="n" style="color: #333;">STEP_INS</span><span class="p">:</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="2598" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
2598
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<pre style="margin: 0;">+<span id="LC2598" class="line" lang="cpp"> <span class="n" style="color: #333;">bpos</span> <span class="o" style="font-weight: 600;">+=</span> <span class="mi" style="color: #099;">1</span><span class="p">;</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="2599" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
2599
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<pre style="margin: 0;">+<span id="LC2599" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">break</span><span class="p">;</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="2600" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
2600
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<pre style="margin: 0;">+<span id="LC2600" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">case</span> <span class="n" style="color: #333;">STEP_DEL</span><span class="p">:</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="2601" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
2601
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<pre style="margin: 0;">+<span id="LC2601" class="line" lang="cpp"> <span class="n" style="color: #333;">apos</span> <span class="o" style="font-weight: 600;">+=</span> <span class="mi" style="color: #099;">1</span><span class="p">;</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="2602" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
2602
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<pre style="margin: 0;">+<span id="LC2602" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">break</span><span class="p">;</span></span>
</pre>
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</td>
<td class="diff-line-num new new_line" data-linenumber="2603" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
2603
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<pre style="margin: 0;">+<span id="LC2603" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">case</span> <span class="n" style="color: #333;">STEP_RESET</span><span class="p">:</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="2604" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
2604
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<pre style="margin: 0;">+<span id="LC2604" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">break</span><span class="p">;</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="2605" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
2605
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<pre style="margin: 0;">+<span id="LC2605" class="line" lang="cpp"> <span class="p">}</span></span>
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<pre style="margin: 0;">+<span id="LC2606" class="line" lang="cpp"> <span class="p">}</span></span>
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<pre style="margin: 0;">+<span id="LC2607" class="line" lang="cpp"></span>
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<pre style="margin: 0;">+<span id="LC2608" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">return</span> <span class="n" style="color: #333;">o</span><span class="p">;</span></span>
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<pre style="margin: 0;">+<span id="LC2609" class="line" lang="cpp"> <span class="p">}</span></span>
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2611
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<pre style="margin: 0;"> <span id="LC2611" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">static</span> <span class="kt" style="color: #458; font-weight: 600;">uint64_t</span> <span class="n" style="color: #333;">getAOffsets</span><span class="p">(</span></span>
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2612
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<pre style="margin: 0;"> <span id="LC2612" class="line" lang="cpp"> <span class="n" style="color: #333;">step_type</span> <span class="k" style="font-weight: 600;">const</span> <span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333;">ta</span><span class="p">,</span></span>
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2613
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<pre style="margin: 0;"> <span id="LC2613" class="line" lang="cpp"> <span class="n" style="color: #333;">step_type</span> <span class="k" style="font-weight: 600;">const</span> <span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333;">te</span><span class="p">,</span></span>
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<a href="https://salsa.debian.org/med-team/libmaus2/-/commit/6344920a2195175b00e0f404a255c749e608930d#cf434e9f8971e193377b85dc880fa316d841b235"><strong>src/libmaus2/lcs/NPLNoTrace.hpp</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -96,6 +96,21 @@ namespace libmaus2</td>
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<pre style="margin: 0;"> <span id="LC96" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">template</span><span class="o" style="font-weight: 600;"><</span><span class="k" style="font-weight: 600;">typename</span> <span class="nc" style="color: #458; font-weight: 600;">iter_a</span><span class="p">,</span> <span class="k" style="font-weight: 600;">typename</span> <span class="nc" style="color: #458; font-weight: 600;">iter_b</span><span class="p">></span></span>
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<pre style="margin: 0;"> <span id="LC97" class="line" lang="cpp"> <span class="n" style="color: #333;">ReturnValue</span> <span class="n" style="color: #333;">np</span><span class="p">(</span><span class="n" style="color: #333;">iter_a</span> <span class="k" style="font-weight: 600;">const</span> <span class="n" style="color: #333;">a</span><span class="p">,</span> <span class="n" style="color: #333;">iter_a</span> <span class="k" style="font-weight: 600;">const</span> <span class="n" style="color: #333;">ae</span><span class="p">,</span> <span class="n" style="color: #333;">iter_b</span> <span class="k" style="font-weight: 600;">const</span> <span class="n" style="color: #333;">b</span><span class="p">,</span> <span class="n" style="color: #333;">iter_b</span> <span class="k" style="font-weight: 600;">const</span> <span class="n" style="color: #333;">be</span><span class="p">,</span> <span class="n" style="color: #333;">index_type</span> <span class="k" style="font-weight: 600;">const</span> <span class="n" style="color: #333;">maxd</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">std</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">numeric_limits</span><span class="o" style="font-weight: 600;"><</span><span class="n" style="color: #333;">index_type</span><span class="o" style="font-weight: 600;">>::</span><span class="n" style="color: #333;">max</span><span class="p">())</span></span>
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<pre style="margin: 0;"> <span id="LC98" class="line" lang="cpp"> <span class="p">{</span></span>
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99
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<pre style="margin: 0;">+<span id="LC99" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span> <span class="n" style="color: #333;">ae</span><span class="o" style="font-weight: 600;">-</span><span class="n" style="color: #333;">a</span> <span class="o" style="font-weight: 600;"><</span> <span class="mi" style="color: #099;">0</span> <span class="p">)</span></span>
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100
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<pre style="margin: 0;">+<span id="LC100" class="line" lang="cpp"> <span class="p">{</span></span>
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<pre style="margin: 0;">+<span id="LC101" class="line" lang="cpp"> <span class="n" style="color: #333;">libmaus2</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">exception</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">LibMausException</span> <span class="n" style="color: #333;">lme</span><span class="p">;</span></span>
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102
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<pre style="margin: 0;">+<span id="LC102" class="line" lang="cpp"> <span class="n" style="color: #333;">lme</span><span class="p">.</span><span class="n" style="color: #333;">getStream</span><span class="p">()</span> <span class="o" style="font-weight: 600;"><<</span> <span class="s" style="color: #d14;">"[E] NPLNoTrace::np: ae-a = "</span> <span class="o" style="font-weight: 600;"><<</span> <span class="n" style="color: #333;">ae</span><span class="o" style="font-weight: 600;">-</span><span class="n" style="color: #333;">a</span> <span class="o" style="font-weight: 600;"><<</span> <span class="n" style="color: #333;">std</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">endl</span><span class="p">;</span></span>
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103
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<pre style="margin: 0;">+<span id="LC103" class="line" lang="cpp"> <span class="n" style="color: #333;">lme</span><span class="p">.</span><span class="n" style="color: #333;">finish</span><span class="p">();</span></span>
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104
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<pre style="margin: 0;">+<span id="LC104" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">throw</span> <span class="n" style="color: #333;">lme</span><span class="p">;</span></span>
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105
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<pre style="margin: 0;">+<span id="LC105" class="line" lang="cpp"> <span class="p">}</span></span>
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106
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<pre style="margin: 0;">+<span id="LC106" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span> <span class="n" style="color: #333;">be</span><span class="o" style="font-weight: 600;">-</span><span class="n" style="color: #333;">b</span> <span class="o" style="font-weight: 600;"><</span> <span class="mi" style="color: #099;">0</span> <span class="p">)</span></span>
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107
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<pre style="margin: 0;">+<span id="LC107" class="line" lang="cpp"> <span class="p">{</span></span>
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108
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<pre style="margin: 0;">+<span id="LC108" class="line" lang="cpp"> <span class="n" style="color: #333;">libmaus2</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">exception</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">LibMausException</span> <span class="n" style="color: #333;">lme</span><span class="p">;</span></span>
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109
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<pre style="margin: 0;">+<span id="LC109" class="line" lang="cpp"> <span class="n" style="color: #333;">lme</span><span class="p">.</span><span class="n" style="color: #333;">getStream</span><span class="p">()</span> <span class="o" style="font-weight: 600;"><<</span> <span class="s" style="color: #d14;">"[E] NPLNoTrace::np: be-b = "</span> <span class="o" style="font-weight: 600;"><<</span> <span class="n" style="color: #333;">be</span><span class="o" style="font-weight: 600;">-</span><span class="n" style="color: #333;">b</span> <span class="o" style="font-weight: 600;"><<</span> <span class="n" style="color: #333;">std</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">endl</span><span class="p">;</span></span>
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110
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<pre style="margin: 0;">+<span id="LC110" class="line" lang="cpp"> <span class="n" style="color: #333;">lme</span><span class="p">.</span><span class="n" style="color: #333;">finish</span><span class="p">();</span></span>
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111
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<pre style="margin: 0;">+<span id="LC111" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">throw</span> <span class="n" style="color: #333;">lme</span><span class="p">;</span></span>
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112
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<pre style="margin: 0;">+<span id="LC112" class="line" lang="cpp"> <span class="p">}</span></span>
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113
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<pre style="margin: 0;">+<span id="LC113" class="line" lang="cpp"></span>
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99
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114
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<pre style="margin: 0;"> <span id="LC114" class="line" lang="cpp"> <span class="n" style="color: #333;">assert</span> <span class="p">(</span> <span class="n" style="color: #333;">ae</span><span class="o" style="font-weight: 600;">-</span><span class="n" style="color: #333;">a</span> <span class="o" style="font-weight: 600;">>=</span> <span class="mi" style="color: #099;">0</span> <span class="p">);</span></span>
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100
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115
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<pre style="margin: 0;"> <span id="LC115" class="line" lang="cpp"> <span class="n" style="color: #333;">assert</span> <span class="p">(</span> <span class="n" style="color: #333;">be</span><span class="o" style="font-weight: 600;">-</span><span class="n" style="color: #333;">b</span> <span class="o" style="font-weight: 600;">>=</span> <span class="mi" style="color: #099;">0</span> <span class="p">);</span></span>
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101
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<pre style="margin: 0;"> <span id="LC116" class="line" lang="cpp"></span>
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<li id="5374ee454dc400137b8de7e098cb2c3aa36d7e72">
<a href="https://salsa.debian.org/med-team/libmaus2/-/commit/6344920a2195175b00e0f404a255c749e608930d#5374ee454dc400137b8de7e098cb2c3aa36d7e72"><strong>src/libmaus2/util/ArgParser.hpp</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -214,6 +214,7 @@ namespace libmaus2</td>
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<pre style="margin: 0;"> <span id="LC214" class="line" lang="cpp"> <span class="n" style="color: #333;">std</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">map</span><span class="o" style="font-weight: 600;"><</span><span class="n" style="color: #333;">std</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">string</span><span class="p">,</span> <span class="n" style="color: #333;">ArgumentDefinition</span> <span class="k" style="font-weight: 600;">const</span> <span class="o" style="font-weight: 600;">*></span> <span class="n" style="color: #333;">shortKeys</span><span class="p">;</span></span>
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<pre style="margin: 0;"> <span id="LC215" class="line" lang="cpp"> <span class="n" style="color: #333;">std</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">map</span><span class="o" style="font-weight: 600;"><</span><span class="n" style="color: #333;">std</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">string</span><span class="p">,</span> <span class="n" style="color: #333;">ArgumentDefinition</span> <span class="k" style="font-weight: 600;">const</span> <span class="o" style="font-weight: 600;">*></span> <span class="n" style="color: #333;">longKeys</span><span class="p">;</span></span>
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<pre style="margin: 0;"> <span id="LC216" class="line" lang="cpp"></span>
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<pre style="margin: 0;">+<span id="LC217" class="line" lang="cpp"> <span class="c1" style="color: #998; font-style: italic;">// check whether argument names are unique</span></span>
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<pre style="margin: 0;"> <span id="LC218" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">for</span> <span class="p">(</span> <span class="kt" style="color: #458; font-weight: 600;">uint64_t</span> <span class="n" style="color: #333;">i</span> <span class="o" style="font-weight: 600;">=</span> <span class="mi" style="color: #099;">0</span><span class="p">;</span> <span class="n" style="color: #333;">i</span> <span class="o" style="font-weight: 600;"><</span> <span class="n" style="color: #333;">Vformat</span><span class="p">.</span><span class="n" style="color: #333;">size</span><span class="p">();</span> <span class="o" style="font-weight: 600;">++</span><span class="n" style="color: #333;">i</span> <span class="p">)</span></span>
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<pre style="margin: 0;"> <span id="LC219" class="line" lang="cpp"> <span class="p">{</span></span>
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<pre style="margin: 0;"> <span id="LC220" class="line" lang="cpp"> <span class="n" style="color: #333;">ArgumentDefinition</span> <span class="k" style="font-weight: 600;">const</span> <span class="o" style="font-weight: 600;">&</span> <span class="n" style="color: #333;">D</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">Vformat</span><span class="p">.</span><span class="n" style="color: #333;">at</span><span class="p">(</span><span class="n" style="color: #333;">i</span><span class="p">);</span></span>
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<td class="diff-line-num unfold js-unfold new_line" data-linenumber="253" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -252,6 +253,7 @@ namespace libmaus2</td>
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<pre style="margin: 0;"> <span id="LC253" class="line" lang="cpp"> <span class="kt" style="color: #458; font-weight: 600;">bool</span> <span class="n" style="color: #333;">argvalue</span> <span class="o" style="font-weight: 600;">=</span> <span class="nb" style="color: #0086b3;">false</span><span class="p">;</span></span>
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<pre style="margin: 0;"> <span id="LC254" class="line" lang="cpp"> <span class="n" style="color: #333;">ArgumentDefinition</span> <span class="k" style="font-weight: 600;">const</span> <span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333;">D</span> <span class="o" style="font-weight: 600;">=</span> <span class="nb" style="color: #0086b3;">nullptr</span><span class="p">;</span></span>
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<pre style="margin: 0;"> <span id="LC255" class="line" lang="cpp"></span>
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<pre style="margin: 0;">+<span id="LC256" class="line" lang="cpp"> <span class="c1" style="color: #998; font-style: italic;">// parse</span></span>
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257
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<pre style="margin: 0;"> <span id="LC257" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">for</span> <span class="p">(</span> <span class="kt" style="color: #458; font-weight: 600;">uint64_t</span> <span class="n" style="color: #333;">i</span> <span class="o" style="font-weight: 600;">=</span> <span class="mi" style="color: #099;">1</span><span class="p">;</span> <span class="n" style="color: #333;">i</span> <span class="o" style="font-weight: 600;"><</span> <span class="n" style="color: #333;">args</span><span class="p">.</span><span class="n" style="color: #333;">size</span><span class="p">();</span> <span class="o" style="font-weight: 600;">++</span><span class="n" style="color: #333;">i</span> <span class="p">)</span></span>
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256
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258
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<pre style="margin: 0;"> <span id="LC258" class="line" lang="cpp"> <span class="p">{</span></span>
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257
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259
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<pre style="margin: 0;"> <span id="LC259" class="line" lang="cpp"> <span class="n" style="color: #333;">std</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">string</span> <span class="n" style="color: #333;">arg</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">args</span><span class="p">.</span><span class="n" style="color: #333;">at</span><span class="p">(</span><span class="n" style="color: #333;">i</span><span class="p">);</span></span>
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<td class="diff-line-num unfold js-unfold new_line" data-linenumber="274" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -272,8 +274,10 @@ namespace libmaus2</td>
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<pre style="margin: 0;"> <span id="LC274" class="line" lang="cpp"> <span class="c1" style="color: #998; font-style: italic;">// if argument does not start with "--"</span></span>
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273
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<pre style="margin: 0;"> <span id="LC275" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">else</span> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span> <span class="n" style="color: #333;">arg</span><span class="p">[</span><span class="mi" style="color: #099;">1</span><span class="p">]</span> <span class="o" style="font-weight: 600;">!=</span> <span class="sc" style="color: #d14;">'-'</span> <span class="p">)</span></span>
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<pre style="margin: 0;"> <span id="LC276" class="line" lang="cpp"> <span class="p">{</span></span>
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277
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<pre style="margin: 0;">+<span id="LC277" class="line" lang="cpp"> <span class="c1" style="color: #998; font-style: italic;">// get argument key</span></span>
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275
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<pre style="margin: 0;"> <span id="LC278" class="line" lang="cpp"> <span class="n" style="color: #333;">argkey</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">arg</span><span class="p">.</span><span class="n" style="color: #333;">substr</span><span class="p">(</span><span class="mi" style="color: #099;">1</span><span class="p">,</span><span class="mi" style="color: #099;">1</span><span class="p">);</span></span>
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276
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<pre style="margin: 0;"> <span id="LC279" class="line" lang="cpp"></span>
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<pre style="margin: 0;">+<span id="LC280" class="line" lang="cpp"> <span class="c1" style="color: #998; font-style: italic;">// search for key</span></span>
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<pre style="margin: 0;"> <span id="LC281" class="line" lang="cpp"> <span class="n" style="color: #333;">std</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">map</span><span class="o" style="font-weight: 600;"><</span><span class="n" style="color: #333;">std</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">string</span><span class="p">,</span><span class="n" style="color: #333;">ArgumentDefinition</span> <span class="k" style="font-weight: 600;">const</span> <span class="o" style="font-weight: 600;">*>::</span><span class="n" style="color: #333;">const_iterator</span> <span class="n" style="color: #333;">it</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">shortKeys</span><span class="p">.</span><span class="n" style="color: #333;">find</span><span class="p">(</span><span class="n" style="color: #333;">argkey</span><span class="p">);</span></span>
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<pre style="margin: 0;"> <span id="LC282" class="line" lang="cpp"></span>
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<pre style="margin: 0;"> <span id="LC283" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span> <span class="n" style="color: #333;">it</span> <span class="o" style="font-weight: 600;">==</span> <span class="n" style="color: #333;">shortKeys</span><span class="p">.</span><span class="n" style="color: #333;">end</span><span class="p">()</span> <span class="p">)</span></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="284" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="288" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -284,16 +288,22 @@ namespace libmaus2</td>
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<pre style="margin: 0;"> <span id="LC288" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">throw</span> <span class="n" style="color: #333;">lme</span><span class="p">;</span></span>
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<pre style="margin: 0;"> <span id="LC289" class="line" lang="cpp"> <span class="p">}</span></span>
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<pre style="margin: 0;"> <span id="LC290" class="line" lang="cpp"></span>
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<pre style="margin: 0;">+<span id="LC291" class="line" lang="cpp"> <span class="c1" style="color: #998; font-style: italic;">// get argument definition</span></span>
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<pre style="margin: 0;"> <span id="LC292" class="line" lang="cpp"> <span class="n" style="color: #333;">D</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">it</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">second</span><span class="p">;</span></span>
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293
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<pre style="margin: 0;">+<span id="LC293" class="line" lang="cpp"> <span class="c1" style="color: #998; font-style: italic;">// use long name as key if any</span></span>
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288
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<pre style="margin: 0;"> <span id="LC294" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span> <span class="n" style="color: #333;">D</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">longName</span><span class="p">.</span><span class="n" style="color: #333;">size</span><span class="p">()</span> <span class="p">)</span></span>
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289
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295
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<pre style="margin: 0;"> <span id="LC295" class="line" lang="cpp"> <span class="n" style="color: #333;">argkey</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">D</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">longName</span><span class="p">;</span></span>
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290
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296
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<pre style="margin: 0;"> <span id="LC296" class="line" lang="cpp"></span>
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297
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<pre style="margin: 0;">+<span id="LC297" class="line" lang="cpp"> <span class="c1" style="color: #998; font-style: italic;">// check if any value is given without a space between</span></span>
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291
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298
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<pre style="margin: 0;"> <span id="LC298" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span> <span class="n" style="color: #333;">arg</span><span class="p">.</span><span class="n" style="color: #333;">size</span><span class="p">()</span> <span class="o" style="font-weight: 600;">></span> <span class="mi" style="color: #099;">2</span> <span class="p">)</span></span>
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292
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299
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<pre style="margin: 0;"> <span id="LC299" class="line" lang="cpp"> <span class="p">{</span></span>
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300
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<pre style="margin: 0;">+<span id="LC300" class="line" lang="cpp"> <span class="c1" style="color: #998; font-style: italic;">// get value</span></span>
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293
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301
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<pre style="margin: 0;"> <span id="LC301" class="line" lang="cpp"> <span class="n" style="color: #333;">std</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">string</span> <span class="k" style="font-weight: 600;">const</span> <span class="n" style="color: #333;">argvalue</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">arg</span><span class="p">.</span><span class="n" style="color: #333;">substr</span><span class="p">(</span><span class="mi" style="color: #099;">2</span><span class="p">);</span></span>
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294
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302
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<pre style="margin: 0;"> <span id="LC302" class="line" lang="cpp"></span>
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303
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<pre style="margin: 0;">+<span id="LC303" class="line" lang="cpp"> <span class="c1" style="color: #998; font-style: italic;">// push it if argument requires value</span></span>
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295
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304
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<pre style="margin: 0;"> <span id="LC304" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span> <span class="n" style="color: #333;">D</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">hasValue</span> <span class="p">)</span></span>
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296
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305
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<pre style="margin: 0;"> <span id="LC305" class="line" lang="cpp"> <span class="n" style="color: #333;">kvargs</span><span class="p">.</span><span class="n" style="color: #333;">insert</span><span class="p">(</span><span class="n" style="color: #333;">std</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">pair</span><span class="o" style="font-weight: 600;"><</span><span class="n" style="color: #333;">std</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">string</span><span class="p">,</span><span class="n" style="color: #333;">std</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">string</span><span class="o" style="font-weight: 600;">></span><span class="p">(</span><span class="n" style="color: #333;">argkey</span><span class="p">,</span><span class="n" style="color: #333;">argvalue</span><span class="p">));</span></span>
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306
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<pre style="margin: 0;">+<span id="LC306" class="line" lang="cpp"> <span class="c1" style="color: #998; font-style: italic;">// otherwise throw error</span></span>
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297
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307
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<pre style="margin: 0;"> <span id="LC307" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">else</span></span>
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298
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308
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<pre style="margin: 0;"> <span id="LC308" class="line" lang="cpp"> <span class="p">{</span></span>
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299
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309
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<pre style="margin: 0;"> <span id="LC309" class="line" lang="cpp"> <span class="n" style="color: #333;">libmaus2</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">exception</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">LibMausException</span> <span class="n" style="color: #333;">lme</span><span class="p">;</span></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="302" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="312" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -302,8 +312,12 @@ namespace libmaus2</td>
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302
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312
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<pre style="margin: 0;"> <span id="LC312" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">throw</span> <span class="n" style="color: #333;">lme</span><span class="p">;</span></span>
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303
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313
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<pre style="margin: 0;"> <span id="LC313" class="line" lang="cpp"> <span class="p">}</span></span>
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304
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<pre style="margin: 0;"> <span id="LC314" class="line" lang="cpp"> <span class="p">}</span></span>
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<td class="diff-line-num new new_line" data-linenumber="315" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
315
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<pre style="margin: 0;">+<span id="LC315" class="line" lang="cpp"> <span class="c1" style="color: #998; font-style: italic;">// if argument requires a value</span></span>
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305
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316
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<pre style="margin: 0;"> <span id="LC316" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">else</span> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span> <span class="n" style="color: #333;">D</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">hasValue</span> <span class="p">)</span></span>
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306
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317
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<pre style="margin: 0;"> <span id="LC317" class="line" lang="cpp"> <span class="n" style="color: #333;">argvalue</span> <span class="o" style="font-weight: 600;">=</span> <span class="nb" style="color: #0086b3;">true</span><span class="p">;</span></span>
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<pre style="margin: 0;">+<span id="LC318" class="line" lang="cpp"> <span class="c1" style="color: #998; font-style: italic;">// otherwise push kv element with empty value</span></span>
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<pre style="margin: 0;">+<span id="LC319" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">else</span></span>
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<pre style="margin: 0;">+<span id="LC320" class="line" lang="cpp"> <span class="n" style="color: #333;">kvargs</span><span class="p">.</span><span class="n" style="color: #333;">insert</span><span class="p">(</span><span class="n" style="color: #333;">std</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">pair</span><span class="o" style="font-weight: 600;"><</span><span class="n" style="color: #333;">std</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">string</span><span class="p">,</span><span class="n" style="color: #333;">std</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">string</span><span class="o" style="font-weight: 600;">></span><span class="p">(</span><span class="n" style="color: #333;">argkey</span><span class="p">,</span><span class="n" style="color: #333;">std</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">string</span><span class="p">()));</span></span>
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<pre style="margin: 0;"> <span id="LC321" class="line" lang="cpp"> <span class="p">}</span></span>
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<pre style="margin: 0;"> <span id="LC322" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">else</span></span>
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323
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<pre style="margin: 0;"> <span id="LC323" class="line" lang="cpp"> <span class="p">{</span></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -345,6 +359,10 @@ namespace libmaus2</td>
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359
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<pre style="margin: 0;"> <span id="LC359" class="line" lang="cpp"> <span class="p">{</span></span>
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346
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<pre style="margin: 0;"> <span id="LC360" class="line" lang="cpp"> <span class="n" style="color: #333;">argvalue</span> <span class="o" style="font-weight: 600;">=</span> <span class="nb" style="color: #0086b3;">true</span><span class="p">;</span></span>
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361
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<pre style="margin: 0;"> <span id="LC361" class="line" lang="cpp"> <span class="p">}</span></span>
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362
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<pre style="margin: 0;">+<span id="LC362" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">else</span></span>
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<pre style="margin: 0;">+<span id="LC363" class="line" lang="cpp"> <span class="p">{</span></span>
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<pre style="margin: 0;">+<span id="LC364" class="line" lang="cpp"> <span class="n" style="color: #333;">kvargs</span><span class="p">.</span><span class="n" style="color: #333;">insert</span><span class="p">(</span><span class="n" style="color: #333;">std</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">pair</span><span class="o" style="font-weight: 600;"><</span><span class="n" style="color: #333;">std</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">string</span><span class="p">,</span><span class="n" style="color: #333;">std</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">string</span><span class="o" style="font-weight: 600;">></span><span class="p">(</span><span class="n" style="color: #333;">argkey</span><span class="p">,</span><span class="n" style="color: #333;">std</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">string</span><span class="p">()));</span></span>
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<pre style="margin: 0;">+<span id="LC365" class="line" lang="cpp"> <span class="p">}</span></span>
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<pre style="margin: 0;"> <span id="LC366" class="line" lang="cpp"> <span class="p">}</span></span>
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<pre style="margin: 0;"> <span id="LC367" class="line" lang="cpp"> <span class="p">}</span></span>
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<pre style="margin: 0;"> <span id="LC368" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">else</span></span>
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<li id="ae16a395ee500177741524e2edb6ed451f913fa5">
<a href="https://salsa.debian.org/med-team/libmaus2/-/commit/6344920a2195175b00e0f404a255c749e608930d#ae16a395ee500177741524e2edb6ed451f913fa5"><strong>src/libmaus2/util/SerialiseHelper.hpp</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="cpp"><span class="cm" style="color: #998; font-style: italic;">/*</span></span>
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2
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="cpp"><span class="cm" style="color: #998; font-style: italic;"> libmaus2</span></span>
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3
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="cpp"><span class="cm" style="color: #998; font-style: italic;"> Copyright (C) 2020 German Tischler-Höhle</span></span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="cpp"></span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="cpp"><span class="cm" style="color: #998; font-style: italic;"> This program is free software: you can redistribute it and/or modify</span></span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="cpp"><span class="cm" style="color: #998; font-style: italic;"> it under the terms of the GNU General Public License as published by</span></span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="cpp"><span class="cm" style="color: #998; font-style: italic;"> the Free Software Foundation, either version 3 of the License, or</span></span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="cpp"><span class="cm" style="color: #998; font-style: italic;"> (at your option) any later version.</span></span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="cpp"></span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="cpp"><span class="cm" style="color: #998; font-style: italic;"> This program is distributed in the hope that it will be useful,</span></span>
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="cpp"><span class="cm" style="color: #998; font-style: italic;"> but WITHOUT ANY WARRANTY; without even the implied warranty of</span></span>
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12
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="cpp"><span class="cm" style="color: #998; font-style: italic;"> MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the</span></span>
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="cpp"><span class="cm" style="color: #998; font-style: italic;"> GNU General Public License for more details.</span></span>
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="cpp"></span>
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="cpp"><span class="cm" style="color: #998; font-style: italic;"> You should have received a copy of the GNU General Public License</span></span>
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16
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="cpp"><span class="cm" style="color: #998; font-style: italic;"> along with this program. If not, see <http://www.gnu.org/licenses/>.</span></span>
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17
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="cpp"><span class="cm" style="color: #998; font-style: italic;">*/</span></span>
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18
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<pre style="margin: 0;">+<span id="LC18" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#if ! defined(LIBMAUS2_UTIL_SERIALISEHELPER_HPP)</span></span>
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19
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#define LIBMAUS2_UTIL_SERIALISEHELPER_HPP</span></span>
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20
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<pre style="margin: 0;">+<span id="LC20" class="line" lang="cpp"></span>
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<pre style="margin: 0;">+<span id="LC21" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#include <libmaus2/exception/LibMausException.hpp></span></span>
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22
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<pre style="margin: 0;">+<span id="LC22" class="line" lang="cpp"></span>
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23
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<pre style="margin: 0;">+<span id="LC23" class="line" lang="cpp"><span class="k" style="font-weight: 600;">namespace</span> <span class="n" style="color: #333;">libmaus2</span></span>
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24
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<pre style="margin: 0;">+<span id="LC24" class="line" lang="cpp"><span class="p">{</span></span>
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25
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<pre style="margin: 0;">+<span id="LC25" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">namespace</span> <span class="n" style="color: #333;">util</span></span>
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26
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<pre style="margin: 0;">+<span id="LC26" class="line" lang="cpp"> <span class="p">{</span></span>
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27
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<pre style="margin: 0;">+<span id="LC27" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">struct</span> <span class="nc" style="color: #458; font-weight: 600;">SerialiseHelper</span></span>
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28
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<pre style="margin: 0;">+<span id="LC28" class="line" lang="cpp"> <span class="p">{</span></span>
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29
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<pre style="margin: 0;">+<span id="LC29" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">template</span><span class="o" style="font-weight: 600;"><</span><span class="k" style="font-weight: 600;">typename</span> <span class="nc" style="color: #458; font-weight: 600;">number_type</span><span class="p">></span></span>
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30
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<pre style="margin: 0;">+<span id="LC30" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">static</span> <span class="kt" style="color: #458; font-weight: 600;">void</span> <span class="n" style="color: #333;">writeNumber</span><span class="p">(</span><span class="n" style="color: #333;">std</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">ostream</span> <span class="o" style="font-weight: 600;">&</span> <span class="n" style="color: #333;">out</span><span class="p">,</span> <span class="n" style="color: #333;">number_type</span> <span class="k" style="font-weight: 600;">const</span> <span class="n" style="color: #333;">v</span><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC31" class="line" lang="cpp"> <span class="p">{</span></span>
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<pre style="margin: 0;">+<span id="LC32" class="line" lang="cpp"> <span class="n" style="color: #333;">out</span><span class="p">.</span><span class="n" style="color: #333;">write</span><span class="p">(</span><span class="k" style="font-weight: 600;">reinterpret_cast</span><span class="o" style="font-weight: 600;"><</span><span class="kt" style="color: #458; font-weight: 600;">char</span> <span class="k" style="font-weight: 600;">const</span> <span class="o" style="font-weight: 600;">*></span><span class="p">(</span><span class="o" style="font-weight: 600;">&</span><span class="n" style="color: #333;">v</span><span class="p">),</span><span class="k" style="font-weight: 600;">sizeof</span><span class="p">(</span><span class="n" style="color: #333;">v</span><span class="p">));</span></span>
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<pre style="margin: 0;">+<span id="LC33" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span> <span class="o" style="font-weight: 600;">!</span> <span class="n" style="color: #333;">out</span> <span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC34" class="line" lang="cpp"> <span class="p">{</span></span>
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<pre style="margin: 0;">+<span id="LC35" class="line" lang="cpp"> <span class="n" style="color: #333;">libmaus2</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">exception</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">LibMausException</span> <span class="n" style="color: #333;">lme</span><span class="p">;</span></span>
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36
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<pre style="margin: 0;">+<span id="LC36" class="line" lang="cpp"> <span class="n" style="color: #333;">lme</span><span class="p">.</span><span class="n" style="color: #333;">getStream</span><span class="p">()</span> <span class="o" style="font-weight: 600;"><<</span> <span class="s" style="color: #d14;">"[E] SerialiseHelper::writeNumber: failed to write number"</span> <span class="o" style="font-weight: 600;"><<</span> <span class="n" style="color: #333;">std</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">endl</span><span class="p">;</span></span>
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37
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<pre style="margin: 0;">+<span id="LC37" class="line" lang="cpp"> <span class="n" style="color: #333;">lme</span><span class="p">.</span><span class="n" style="color: #333;">finish</span><span class="p">();</span></span>
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<pre style="margin: 0;">+<span id="LC38" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">throw</span> <span class="n" style="color: #333;">lme</span><span class="p">;</span></span>
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<pre style="margin: 0;">+<span id="LC39" class="line" lang="cpp"> <span class="p">}</span></span>
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<pre style="margin: 0;">+<span id="LC40" class="line" lang="cpp"> <span class="p">}</span></span>
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41
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<pre style="margin: 0;">+<span id="LC41" class="line" lang="cpp"></span>
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<pre style="margin: 0;">+<span id="LC42" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">static</span> <span class="kt" style="color: #458; font-weight: 600;">void</span> <span class="n" style="color: #333;">writeString</span><span class="p">(</span><span class="n" style="color: #333;">std</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">ostream</span> <span class="o" style="font-weight: 600;">&</span> <span class="n" style="color: #333;">out</span><span class="p">,</span> <span class="n" style="color: #333;">std</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">string</span> <span class="k" style="font-weight: 600;">const</span> <span class="o" style="font-weight: 600;">&</span> <span class="n" style="color: #333;">s</span><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC43" class="line" lang="cpp"> <span class="p">{</span></span>
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<pre style="margin: 0;">+<span id="LC44" class="line" lang="cpp"> <span class="kt" style="color: #458; font-weight: 600;">uint64_t</span> <span class="k" style="font-weight: 600;">const</span> <span class="n" style="color: #333;">n</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">s</span><span class="p">.</span><span class="n" style="color: #333;">size</span><span class="p">();</span></span>
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<pre style="margin: 0;">+<span id="LC45" class="line" lang="cpp"> <span class="n" style="color: #333;">writeNumber</span><span class="p">(</span><span class="n" style="color: #333;">out</span><span class="p">,</span><span class="n" style="color: #333;">n</span><span class="p">);</span></span>
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<pre style="margin: 0;">+<span id="LC46" class="line" lang="cpp"> <span class="n" style="color: #333;">out</span><span class="p">.</span><span class="n" style="color: #333;">write</span><span class="p">(</span><span class="n" style="color: #333;">s</span><span class="p">.</span><span class="n" style="color: #333;">c_str</span><span class="p">(),</span><span class="n" style="color: #333;">n</span><span class="o" style="font-weight: 600;">+</span><span class="mi" style="color: #099;">1</span><span class="p">);</span></span>
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<pre style="margin: 0;">+<span id="LC47" class="line" lang="cpp"> <span class="p">}</span></span>
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48
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<pre style="margin: 0;">+<span id="LC48" class="line" lang="cpp"></span>
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<pre style="margin: 0;">+<span id="LC49" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">template</span><span class="o" style="font-weight: 600;"><</span><span class="k" style="font-weight: 600;">typename</span> <span class="nc" style="color: #458; font-weight: 600;">number_type</span><span class="p">></span></span>
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<pre style="margin: 0;">+<span id="LC50" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">static</span> <span class="kt" style="color: #458; font-weight: 600;">void</span> <span class="n" style="color: #333;">readNumber</span><span class="p">(</span><span class="n" style="color: #333;">std</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">istream</span> <span class="o" style="font-weight: 600;">&</span> <span class="n" style="color: #333;">in</span><span class="p">,</span> <span class="n" style="color: #333;">number_type</span> <span class="o" style="font-weight: 600;">&</span> <span class="n" style="color: #333;">v</span><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC51" class="line" lang="cpp"> <span class="p">{</span></span>
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<pre style="margin: 0;">+<span id="LC52" class="line" lang="cpp"> <span class="n" style="color: #333;">in</span><span class="p">.</span><span class="n" style="color: #333;">read</span><span class="p">(</span><span class="k" style="font-weight: 600;">reinterpret_cast</span><span class="o" style="font-weight: 600;"><</span><span class="kt" style="color: #458; font-weight: 600;">char</span> <span class="o" style="font-weight: 600;">*></span><span class="p">(</span><span class="o" style="font-weight: 600;">&</span><span class="n" style="color: #333;">v</span><span class="p">),</span><span class="k" style="font-weight: 600;">sizeof</span><span class="p">(</span><span class="n" style="color: #333;">v</span><span class="p">));</span></span>
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53
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<pre style="margin: 0;">+<span id="LC53" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span> <span class="o" style="font-weight: 600;">!</span> <span class="n" style="color: #333;">in</span> <span class="o" style="font-weight: 600;">||</span> <span class="n" style="color: #333;">in</span><span class="p">.</span><span class="n" style="color: #333;">gcount</span><span class="p">()</span> <span class="o" style="font-weight: 600;">!=</span> <span class="k" style="font-weight: 600;">sizeof</span><span class="p">(</span><span class="n" style="color: #333;">v</span><span class="p">)</span> <span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC54" class="line" lang="cpp"> <span class="p">{</span></span>
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55
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<pre style="margin: 0;">+<span id="LC55" class="line" lang="cpp"> <span class="n" style="color: #333;">libmaus2</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">exception</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">LibMausException</span> <span class="n" style="color: #333;">lme</span><span class="p">;</span></span>
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56
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<pre style="margin: 0;">+<span id="LC56" class="line" lang="cpp"> <span class="n" style="color: #333;">lme</span><span class="p">.</span><span class="n" style="color: #333;">getStream</span><span class="p">()</span> <span class="o" style="font-weight: 600;"><<</span> <span class="s" style="color: #d14;">"[E] SerialiseHelper::readNumber: failed to read number"</span> <span class="o" style="font-weight: 600;"><<</span> <span class="n" style="color: #333;">std</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">endl</span><span class="p">;</span></span>
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57
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<pre style="margin: 0;">+<span id="LC57" class="line" lang="cpp"> <span class="n" style="color: #333;">lme</span><span class="p">.</span><span class="n" style="color: #333;">finish</span><span class="p">();</span></span>
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58
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<pre style="margin: 0;">+<span id="LC58" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">throw</span> <span class="n" style="color: #333;">lme</span><span class="p">;</span></span>
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59
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<pre style="margin: 0;">+<span id="LC59" class="line" lang="cpp"> <span class="p">}</span></span>
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60
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<pre style="margin: 0;">+<span id="LC60" class="line" lang="cpp"> <span class="p">}</span></span>
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61
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<pre style="margin: 0;">+<span id="LC61" class="line" lang="cpp"></span>
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62
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<pre style="margin: 0;">+<span id="LC62" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">static</span> <span class="kt" style="color: #458; font-weight: 600;">void</span> <span class="n" style="color: #333;">readString</span><span class="p">(</span><span class="n" style="color: #333;">std</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">istream</span> <span class="o" style="font-weight: 600;">&</span> <span class="n" style="color: #333;">in</span><span class="p">,</span> <span class="n" style="color: #333;">std</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">string</span> <span class="o" style="font-weight: 600;">&</span> <span class="n" style="color: #333;">s</span><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC63" class="line" lang="cpp"> <span class="p">{</span></span>
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<pre style="margin: 0;">+<span id="LC64" class="line" lang="cpp"> <span class="kt" style="color: #458; font-weight: 600;">uint64_t</span> <span class="n" style="color: #333;">n</span><span class="p">;</span></span>
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65
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<pre style="margin: 0;">+<span id="LC65" class="line" lang="cpp"> <span class="n" style="color: #333;">readNumber</span><span class="p">(</span><span class="n" style="color: #333;">in</span><span class="p">,</span><span class="n" style="color: #333;">n</span><span class="p">);</span></span>
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66
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<pre style="margin: 0;">+<span id="LC66" class="line" lang="cpp"> <span class="n" style="color: #333;">s</span><span class="p">.</span><span class="n" style="color: #333;">resize</span><span class="p">(</span><span class="n" style="color: #333;">n</span><span class="p">);</span></span>
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67
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<pre style="margin: 0;">+<span id="LC67" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">for</span> <span class="p">(</span> <span class="kt" style="color: #458; font-weight: 600;">uint64_t</span> <span class="n" style="color: #333;">i</span> <span class="o" style="font-weight: 600;">=</span> <span class="mi" style="color: #099;">0</span><span class="p">;</span> <span class="n" style="color: #333;">i</span> <span class="o" style="font-weight: 600;"><</span> <span class="n" style="color: #333;">n</span><span class="p">;</span> <span class="o" style="font-weight: 600;">++</span><span class="n" style="color: #333;">i</span> <span class="p">)</span></span>
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68
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<pre style="margin: 0;">+<span id="LC68" class="line" lang="cpp"> <span class="p">{</span></span>
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69
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<pre style="margin: 0;">+<span id="LC69" class="line" lang="cpp"> <span class="kt" style="color: #458; font-weight: 600;">int</span> <span class="n" style="color: #333;">c</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">in</span><span class="p">.</span><span class="n" style="color: #333;">get</span><span class="p">();</span></span>
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70
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<pre style="margin: 0;">+<span id="LC70" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span> <span class="n" style="color: #333;">in</span> <span class="o" style="font-weight: 600;">&&</span> <span class="n" style="color: #333;">c</span> <span class="o" style="font-weight: 600;">!=</span> <span class="n" style="color: #333;">std</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">istream</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">traits_type</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">eof</span><span class="p">()</span> <span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC71" class="line" lang="cpp"> <span class="n" style="color: #333;">s</span><span class="p">[</span><span class="n" style="color: #333;">i</span><span class="p">]</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">c</span><span class="p">;</span></span>
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<pre style="margin: 0;">+<span id="LC72" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">else</span></span>
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73
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<pre style="margin: 0;">+<span id="LC73" class="line" lang="cpp"> <span class="p">{</span></span>
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74
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<pre style="margin: 0;">+<span id="LC74" class="line" lang="cpp"> <span class="n" style="color: #333;">libmaus2</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">exception</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">LibMausException</span> <span class="n" style="color: #333;">lme</span><span class="p">;</span></span>
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75
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<pre style="margin: 0;">+<span id="LC75" class="line" lang="cpp"> <span class="n" style="color: #333;">lme</span><span class="p">.</span><span class="n" style="color: #333;">getStream</span><span class="p">()</span> <span class="o" style="font-weight: 600;"><<</span> <span class="s" style="color: #d14;">"[E] SerialiseHelper::readString: failed to read string"</span> <span class="o" style="font-weight: 600;"><<</span> <span class="n" style="color: #333;">std</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">endl</span><span class="p">;</span></span>
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76
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<pre style="margin: 0;">+<span id="LC76" class="line" lang="cpp"> <span class="n" style="color: #333;">lme</span><span class="p">.</span><span class="n" style="color: #333;">finish</span><span class="p">();</span></span>
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77
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<pre style="margin: 0;">+<span id="LC77" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">throw</span> <span class="n" style="color: #333;">lme</span><span class="p">;</span></span>
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78
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<pre style="margin: 0;">+<span id="LC78" class="line" lang="cpp"> <span class="p">}</span></span>
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79
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<pre style="margin: 0;">+<span id="LC79" class="line" lang="cpp"> <span class="p">}</span></span>
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80
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<pre style="margin: 0;">+<span id="LC80" class="line" lang="cpp"></span>
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81
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<pre style="margin: 0;">+<span id="LC81" class="line" lang="cpp"> <span class="kt" style="color: #458; font-weight: 600;">int</span> <span class="n" style="color: #333;">c</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">in</span><span class="p">.</span><span class="n" style="color: #333;">get</span><span class="p">();</span></span>
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82
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<pre style="margin: 0;">+<span id="LC82" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span> <span class="o" style="font-weight: 600;">!</span> <span class="n" style="color: #333;">in</span> <span class="o" style="font-weight: 600;">||</span> <span class="n" style="color: #333;">c</span> <span class="o" style="font-weight: 600;">==</span> <span class="n" style="color: #333;">std</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">istream</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">traits_type</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">eof</span><span class="p">()</span> <span class="o" style="font-weight: 600;">||</span> <span class="n" style="color: #333;">c</span> <span class="o" style="font-weight: 600;">!=</span> <span class="mi" style="color: #099;">0</span> <span class="p">)</span></span>
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83
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<pre style="margin: 0;">+<span id="LC83" class="line" lang="cpp"> <span class="p">{</span></span>
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84
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<pre style="margin: 0;">+<span id="LC84" class="line" lang="cpp"> <span class="n" style="color: #333;">libmaus2</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">exception</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">LibMausException</span> <span class="n" style="color: #333;">lme</span><span class="p">;</span></span>
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85
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<pre style="margin: 0;">+<span id="LC85" class="line" lang="cpp"> <span class="n" style="color: #333;">lme</span><span class="p">.</span><span class="n" style="color: #333;">getStream</span><span class="p">()</span> <span class="o" style="font-weight: 600;"><<</span> <span class="s" style="color: #d14;">"[E] SerialiseHelper::readString: failed to read string"</span> <span class="o" style="font-weight: 600;"><<</span> <span class="n" style="color: #333;">std</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">endl</span><span class="p">;</span></span>
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86
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<pre style="margin: 0;">+<span id="LC86" class="line" lang="cpp"> <span class="n" style="color: #333;">lme</span><span class="p">.</span><span class="n" style="color: #333;">finish</span><span class="p">();</span></span>
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87
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<pre style="margin: 0;">+<span id="LC87" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">throw</span> <span class="n" style="color: #333;">lme</span><span class="p">;</span></span>
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88
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<pre style="margin: 0;">+<span id="LC88" class="line" lang="cpp"> <span class="p">}</span></span>
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89
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<pre style="margin: 0;">+<span id="LC89" class="line" lang="cpp"> <span class="p">}</span></span>
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90
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<pre style="margin: 0;">+<span id="LC90" class="line" lang="cpp"></span>
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91
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<pre style="margin: 0;">+<span id="LC91" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">template</span><span class="o" style="font-weight: 600;"><</span><span class="k" style="font-weight: 600;">typename</span> <span class="nc" style="color: #458; font-weight: 600;">number_type</span><span class="p">></span></span>
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92
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<pre style="margin: 0;">+<span id="LC92" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">static</span> <span class="kt" style="color: #458; font-weight: 600;">void</span> <span class="n" style="color: #333;">getNumber</span><span class="p">(</span><span class="kt" style="color: #458; font-weight: 600;">char</span> <span class="k" style="font-weight: 600;">const</span> <span class="o" style="font-weight: 600;">*</span> <span class="o" style="font-weight: 600;">&</span> <span class="n" style="color: #333;">p</span><span class="p">,</span> <span class="n" style="color: #333;">number_type</span> <span class="o" style="font-weight: 600;">&</span> <span class="n" style="color: #333;">v</span><span class="p">)</span></span>
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93
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<pre style="margin: 0;">+<span id="LC93" class="line" lang="cpp"> <span class="p">{</span></span>
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94
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<pre style="margin: 0;">+<span id="LC94" class="line" lang="cpp"> <span class="n" style="color: #333;">v</span> <span class="o" style="font-weight: 600;">=</span> <span class="o" style="font-weight: 600;">*</span><span class="k" style="font-weight: 600;">reinterpret_cast</span><span class="o" style="font-weight: 600;"><</span><span class="n" style="color: #333;">number_type</span> <span class="k" style="font-weight: 600;">const</span> <span class="o" style="font-weight: 600;">*></span><span class="p">(</span><span class="n" style="color: #333;">p</span><span class="p">);</span></span>
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95
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<pre style="margin: 0;">+<span id="LC95" class="line" lang="cpp"> <span class="n" style="color: #333;">p</span> <span class="o" style="font-weight: 600;">+=</span> <span class="k" style="font-weight: 600;">sizeof</span><span class="p">(</span><span class="n" style="color: #333;">number_type</span><span class="p">);</span></span>
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96
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<pre style="margin: 0;">+<span id="LC96" class="line" lang="cpp"> <span class="p">}</span></span>
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97
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<pre style="margin: 0;">+<span id="LC97" class="line" lang="cpp"></span>
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98
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<pre style="margin: 0;">+<span id="LC98" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">template</span><span class="o" style="font-weight: 600;"><</span><span class="k" style="font-weight: 600;">typename</span> <span class="nc" style="color: #458; font-weight: 600;">number_type</span><span class="p">></span></span>
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99
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<pre style="margin: 0;">+<span id="LC99" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">static</span> <span class="n" style="color: #333;">number_type</span> <span class="n" style="color: #333;">getNumber</span><span class="p">(</span><span class="kt" style="color: #458; font-weight: 600;">char</span> <span class="k" style="font-weight: 600;">const</span> <span class="o" style="font-weight: 600;">*</span> <span class="o" style="font-weight: 600;">&</span> <span class="n" style="color: #333;">p</span><span class="p">)</span></span>
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100
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<pre style="margin: 0;">+<span id="LC100" class="line" lang="cpp"> <span class="p">{</span></span>
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101
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<pre style="margin: 0;">+<span id="LC101" class="line" lang="cpp"> <span class="n" style="color: #333;">number_type</span> <span class="n" style="color: #333;">v</span><span class="p">;</span></span>
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102
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<pre style="margin: 0;">+<span id="LC102" class="line" lang="cpp"> <span class="n" style="color: #333;">getNumber</span><span class="p">(</span><span class="n" style="color: #333;">p</span><span class="p">,</span><span class="n" style="color: #333;">v</span><span class="p">);</span></span>
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103
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<pre style="margin: 0;">+<span id="LC103" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">return</span> <span class="n" style="color: #333;">v</span><span class="p">;</span></span>
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104
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<pre style="margin: 0;">+<span id="LC104" class="line" lang="cpp"> <span class="p">}</span></span>
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105
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<pre style="margin: 0;">+<span id="LC105" class="line" lang="cpp"></span>
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106
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<pre style="margin: 0;">+<span id="LC106" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">static</span> <span class="kt" style="color: #458; font-weight: 600;">void</span> <span class="n" style="color: #333;">getStringPair</span><span class="p">(</span><span class="kt" style="color: #458; font-weight: 600;">char</span> <span class="k" style="font-weight: 600;">const</span> <span class="o" style="font-weight: 600;">*</span> <span class="o" style="font-weight: 600;">&</span> <span class="n" style="color: #333;">p</span><span class="p">,</span> <span class="n" style="color: #333;">std</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">pair</span><span class="o" style="font-weight: 600;"><</span><span class="kt" style="color: #458; font-weight: 600;">char</span> <span class="k" style="font-weight: 600;">const</span> <span class="o" style="font-weight: 600;">*</span><span class="p">,</span> <span class="kt" style="color: #458; font-weight: 600;">char</span> <span class="k" style="font-weight: 600;">const</span> <span class="o" style="font-weight: 600;">*></span> <span class="o" style="font-weight: 600;">&</span> <span class="n" style="color: #333;">P</span><span class="p">)</span></span>
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107
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<pre style="margin: 0;">+<span id="LC107" class="line" lang="cpp"> <span class="p">{</span></span>
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108
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<pre style="margin: 0;">+<span id="LC108" class="line" lang="cpp"> <span class="kt" style="color: #458; font-weight: 600;">uint64_t</span> <span class="n" style="color: #333;">n</span><span class="p">;</span></span>
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109
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<pre style="margin: 0;">+<span id="LC109" class="line" lang="cpp"> <span class="n" style="color: #333;">getNumber</span><span class="p">(</span><span class="n" style="color: #333;">p</span><span class="p">,</span><span class="n" style="color: #333;">n</span><span class="p">);</span></span>
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110
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<pre style="margin: 0;">+<span id="LC110" class="line" lang="cpp"> <span class="n" style="color: #333;">P</span><span class="p">.</span><span class="n" style="color: #333;">first</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">p</span><span class="p">;</span></span>
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111
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<pre style="margin: 0;">+<span id="LC111" class="line" lang="cpp"> <span class="n" style="color: #333;">p</span> <span class="o" style="font-weight: 600;">+=</span> <span class="n" style="color: #333;">n</span><span class="p">;</span></span>
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112
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<pre style="margin: 0;">+<span id="LC112" class="line" lang="cpp"> <span class="n" style="color: #333;">P</span><span class="p">.</span><span class="n" style="color: #333;">second</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">p</span><span class="p">;</span></span>
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113
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<pre style="margin: 0;">+<span id="LC113" class="line" lang="cpp"> <span class="n" style="color: #333;">p</span> <span class="o" style="font-weight: 600;">+=</span> <span class="mi" style="color: #099;">1</span><span class="p">;</span></span>
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114
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<pre style="margin: 0;">+<span id="LC114" class="line" lang="cpp"> <span class="p">}</span></span>
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115
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<pre style="margin: 0;">+<span id="LC115" class="line" lang="cpp"></span>
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116
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<pre style="margin: 0;">+<span id="LC116" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">static</span> <span class="n" style="color: #333;">std</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">pair</span><span class="o" style="font-weight: 600;"><</span><span class="kt" style="color: #458; font-weight: 600;">char</span> <span class="k" style="font-weight: 600;">const</span> <span class="o" style="font-weight: 600;">*</span><span class="p">,</span> <span class="kt" style="color: #458; font-weight: 600;">char</span> <span class="k" style="font-weight: 600;">const</span> <span class="o" style="font-weight: 600;">*></span> <span class="n" style="color: #333;">getStringPair</span><span class="p">(</span><span class="kt" style="color: #458; font-weight: 600;">char</span> <span class="k" style="font-weight: 600;">const</span> <span class="o" style="font-weight: 600;">*</span> <span class="o" style="font-weight: 600;">&</span> <span class="n" style="color: #333;">p</span><span class="p">)</span></span>
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117
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<pre style="margin: 0;">+<span id="LC117" class="line" lang="cpp"> <span class="p">{</span></span>
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118
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<pre style="margin: 0;">+<span id="LC118" class="line" lang="cpp"> <span class="n" style="color: #333;">std</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">pair</span><span class="o" style="font-weight: 600;"><</span><span class="kt" style="color: #458; font-weight: 600;">char</span> <span class="k" style="font-weight: 600;">const</span> <span class="o" style="font-weight: 600;">*</span><span class="p">,</span> <span class="kt" style="color: #458; font-weight: 600;">char</span> <span class="k" style="font-weight: 600;">const</span> <span class="o" style="font-weight: 600;">*></span> <span class="n" style="color: #333;">P</span><span class="p">;</span></span>
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119
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<pre style="margin: 0;">+<span id="LC119" class="line" lang="cpp"> <span class="n" style="color: #333;">getStringPair</span><span class="p">(</span><span class="n" style="color: #333;">p</span><span class="p">,</span><span class="n" style="color: #333;">P</span><span class="p">);</span></span>
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120
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<pre style="margin: 0;">+<span id="LC120" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">return</span> <span class="n" style="color: #333;">P</span><span class="p">;</span></span>
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121
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<pre style="margin: 0;">+<span id="LC121" class="line" lang="cpp"> <span class="p">}</span></span>
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122
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<pre style="margin: 0;">+<span id="LC122" class="line" lang="cpp"></span>
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123
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<pre style="margin: 0;">+<span id="LC123" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">static</span> <span class="n" style="color: #333;">std</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">string</span> <span class="n" style="color: #333;">getString</span><span class="p">(</span><span class="kt" style="color: #458; font-weight: 600;">char</span> <span class="k" style="font-weight: 600;">const</span> <span class="o" style="font-weight: 600;">*</span> <span class="o" style="font-weight: 600;">&</span> <span class="n" style="color: #333;">p</span><span class="p">)</span></span>
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124
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<pre style="margin: 0;">+<span id="LC124" class="line" lang="cpp"> <span class="p">{</span></span>
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125
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<pre style="margin: 0;">+<span id="LC125" class="line" lang="cpp"> <span class="n" style="color: #333;">std</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">pair</span><span class="o" style="font-weight: 600;"><</span><span class="kt" style="color: #458; font-weight: 600;">char</span> <span class="k" style="font-weight: 600;">const</span> <span class="o" style="font-weight: 600;">*</span><span class="p">,</span> <span class="kt" style="color: #458; font-weight: 600;">char</span> <span class="k" style="font-weight: 600;">const</span> <span class="o" style="font-weight: 600;">*></span> <span class="n" style="color: #333;">P</span><span class="p">;</span></span>
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126
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<pre style="margin: 0;">+<span id="LC126" class="line" lang="cpp"> <span class="n" style="color: #333;">getStringPair</span><span class="p">(</span><span class="n" style="color: #333;">p</span><span class="p">,</span><span class="n" style="color: #333;">P</span><span class="p">);</span></span>
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127
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<pre style="margin: 0;">+<span id="LC127" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">return</span> <span class="n" style="color: #333;">std</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">string</span><span class="p">(</span><span class="n" style="color: #333;">P</span><span class="p">.</span><span class="n" style="color: #333;">first</span><span class="p">,</span><span class="n" style="color: #333;">P</span><span class="p">.</span><span class="n" style="color: #333;">second</span><span class="p">);</span></span>
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128
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<pre style="margin: 0;">+<span id="LC128" class="line" lang="cpp"> <span class="p">}</span></span>
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129
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<pre style="margin: 0;">+<span id="LC129" class="line" lang="cpp"></span>
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130
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<pre style="margin: 0;">+<span id="LC130" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">static</span> <span class="kt" style="color: #458; font-weight: 600;">void</span> <span class="n" style="color: #333;">test</span><span class="p">()</span></span>
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131
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<pre style="margin: 0;">+<span id="LC131" class="line" lang="cpp"> <span class="p">{</span></span>
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132
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<pre style="margin: 0;">+<span id="LC132" class="line" lang="cpp"> <span class="kt" style="color: #458; font-weight: 600;">uint64_t</span> <span class="n" style="color: #333;">n0</span> <span class="o" style="font-weight: 600;">=</span> <span class="mi" style="color: #099;">4</span><span class="p">;</span></span>
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133
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<pre style="margin: 0;">+<span id="LC133" class="line" lang="cpp"> <span class="n" style="color: #333;">std</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">string</span> <span class="n" style="color: #333;">s</span> <span class="o" style="font-weight: 600;">=</span> <span class="s" style="color: #d14;">"hello world"</span><span class="p">;</span></span>
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<td class="diff-line-num new new_line" data-linenumber="134" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
134
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<pre style="margin: 0;">+<span id="LC134" class="line" lang="cpp"> <span class="kt" style="color: #458; font-weight: 600;">uint64_t</span> <span class="n" style="color: #333;">n1</span> <span class="o" style="font-weight: 600;">=</span> <span class="mi" style="color: #099;">13</span><span class="p">;</span></span>
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135
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<pre style="margin: 0;">+<span id="LC135" class="line" lang="cpp"></span>
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136
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<pre style="margin: 0;">+<span id="LC136" class="line" lang="cpp"> <span class="n" style="color: #333;">std</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">ostringstream</span> <span class="n" style="color: #333;">ostr</span><span class="p">;</span></span>
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137
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<pre style="margin: 0;">+<span id="LC137" class="line" lang="cpp"> <span class="n" style="color: #333;">writeNumber</span><span class="p">(</span><span class="n" style="color: #333;">ostr</span><span class="p">,</span><span class="n" style="color: #333;">n0</span><span class="p">);</span></span>
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138
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<pre style="margin: 0;">+<span id="LC138" class="line" lang="cpp"> <span class="n" style="color: #333;">writeString</span><span class="p">(</span><span class="n" style="color: #333;">ostr</span><span class="p">,</span><span class="n" style="color: #333;">s</span><span class="p">);</span></span>
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139
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<pre style="margin: 0;">+<span id="LC139" class="line" lang="cpp"> <span class="n" style="color: #333;">writeNumber</span><span class="p">(</span><span class="n" style="color: #333;">ostr</span><span class="p">,</span><span class="n" style="color: #333;">n1</span><span class="p">);</span></span>
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140
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<pre style="margin: 0;">+<span id="LC140" class="line" lang="cpp"> <span class="n" style="color: #333;">ostr</span><span class="p">.</span><span class="n" style="color: #333;">flush</span><span class="p">();</span></span>
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141
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<pre style="margin: 0;">+<span id="LC141" class="line" lang="cpp"></span>
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142
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<pre style="margin: 0;">+<span id="LC142" class="line" lang="cpp"> <span class="n" style="color: #333;">std</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">istringstream</span> <span class="n" style="color: #333;">istr</span><span class="p">(</span><span class="n" style="color: #333;">ostr</span><span class="p">.</span><span class="n" style="color: #333;">str</span><span class="p">());</span></span>
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143
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<pre style="margin: 0;">+<span id="LC143" class="line" lang="cpp"></span>
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144
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<pre style="margin: 0;">+<span id="LC144" class="line" lang="cpp"> <span class="kt" style="color: #458; font-weight: 600;">uint64_t</span> <span class="n" style="color: #333;">in0</span><span class="p">,</span> <span class="n" style="color: #333;">in1</span><span class="p">;</span></span>
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145
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<pre style="margin: 0;">+<span id="LC145" class="line" lang="cpp"> <span class="n" style="color: #333;">std</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">string</span> <span class="n" style="color: #333;">ins</span><span class="p">;</span></span>
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146
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<pre style="margin: 0;">+<span id="LC146" class="line" lang="cpp"></span>
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147
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<pre style="margin: 0;">+<span id="LC147" class="line" lang="cpp"> <span class="n" style="color: #333;">readNumber</span><span class="p">(</span><span class="n" style="color: #333;">istr</span><span class="p">,</span><span class="n" style="color: #333;">in0</span><span class="p">);</span></span>
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148
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<pre style="margin: 0;">+<span id="LC148" class="line" lang="cpp"> <span class="n" style="color: #333;">readString</span><span class="p">(</span><span class="n" style="color: #333;">istr</span><span class="p">,</span><span class="n" style="color: #333;">ins</span><span class="p">);</span></span>
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149
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<pre style="margin: 0;">+<span id="LC149" class="line" lang="cpp"> <span class="n" style="color: #333;">readNumber</span><span class="p">(</span><span class="n" style="color: #333;">istr</span><span class="p">,</span><span class="n" style="color: #333;">in1</span><span class="p">);</span></span>
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150
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<pre style="margin: 0;">+<span id="LC150" class="line" lang="cpp"></span>
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151
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<pre style="margin: 0;">+<span id="LC151" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span> <span class="n" style="color: #333;">in0</span> <span class="o" style="font-weight: 600;">!=</span> <span class="n" style="color: #333;">n0</span> <span class="o" style="font-weight: 600;">||</span> <span class="n" style="color: #333;">ins</span> <span class="o" style="font-weight: 600;">!=</span> <span class="n" style="color: #333;">s</span> <span class="o" style="font-weight: 600;">||</span> <span class="n" style="color: #333;">in1</span> <span class="o" style="font-weight: 600;">!=</span> <span class="n" style="color: #333;">n1</span> <span class="p">)</span></span>
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152
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<pre style="margin: 0;">+<span id="LC152" class="line" lang="cpp"> <span class="p">{</span></span>
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<td class="diff-line-num new new_line" data-linenumber="153" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
153
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<pre style="margin: 0;">+<span id="LC153" class="line" lang="cpp"> <span class="n" style="color: #333;">libmaus2</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">exception</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">LibMausException</span> <span class="n" style="color: #333;">lme</span><span class="p">;</span></span>
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<td class="diff-line-num new new_line" data-linenumber="154" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
154
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<pre style="margin: 0;">+<span id="LC154" class="line" lang="cpp"> <span class="n" style="color: #333;">lme</span><span class="p">.</span><span class="n" style="color: #333;">getStream</span><span class="p">()</span> <span class="o" style="font-weight: 600;"><<</span> <span class="s" style="color: #d14;">"[E] SerialiseHelper::test: failed"</span> <span class="o" style="font-weight: 600;"><<</span> <span class="n" style="color: #333;">std</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">endl</span><span class="p">;</span></span>
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155
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<pre style="margin: 0;">+<span id="LC155" class="line" lang="cpp"> <span class="n" style="color: #333;">lme</span><span class="p">.</span><span class="n" style="color: #333;">finish</span><span class="p">();</span></span>
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<td class="diff-line-num new new_line" data-linenumber="156" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
156
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<pre style="margin: 0;">+<span id="LC156" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">throw</span> <span class="n" style="color: #333;">lme</span><span class="p">;</span></span>
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157
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<pre style="margin: 0;">+<span id="LC157" class="line" lang="cpp"> <span class="p">}</span></span>
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158
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<pre style="margin: 0;">+<span id="LC158" class="line" lang="cpp"></span>
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159
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<pre style="margin: 0;">+<span id="LC159" class="line" lang="cpp"> <span class="n" style="color: #333;">std</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">string</span> <span class="k" style="font-weight: 600;">const</span> <span class="n" style="color: #333;">sdata</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">ostr</span><span class="p">.</span><span class="n" style="color: #333;">str</span><span class="p">();</span></span>
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160
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<pre style="margin: 0;">+<span id="LC160" class="line" lang="cpp"> <span class="kt" style="color: #458; font-weight: 600;">char</span> <span class="k" style="font-weight: 600;">const</span> <span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333;">cdata</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">sdata</span><span class="p">.</span><span class="n" style="color: #333;">c_str</span><span class="p">();</span></span>
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161
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<pre style="margin: 0;">+<span id="LC161" class="line" lang="cpp"></span>
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<td class="diff-line-num new new_line" data-linenumber="162" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
162
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<pre style="margin: 0;">+<span id="LC162" class="line" lang="cpp"> <span class="kt" style="color: #458; font-weight: 600;">uint64_t</span> <span class="n" style="color: #333;">cn0</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">getNumber</span><span class="o" style="font-weight: 600;"><</span><span class="kt" style="color: #458; font-weight: 600;">uint64_t</span><span class="o" style="font-weight: 600;">></span><span class="p">(</span><span class="n" style="color: #333;">cdata</span><span class="p">);</span></span>
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<td class="diff-line-num new new_line" data-linenumber="163" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
163
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<pre style="margin: 0;">+<span id="LC163" class="line" lang="cpp"> <span class="n" style="color: #333;">std</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">string</span> <span class="n" style="color: #333;">cs</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">getString</span><span class="p">(</span><span class="n" style="color: #333;">cdata</span><span class="p">);</span></span>
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<td class="diff-line-num new new_line" data-linenumber="164" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
164
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<pre style="margin: 0;">+<span id="LC164" class="line" lang="cpp"> <span class="kt" style="color: #458; font-weight: 600;">uint64_t</span> <span class="n" style="color: #333;">cn1</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">getNumber</span><span class="o" style="font-weight: 600;"><</span><span class="kt" style="color: #458; font-weight: 600;">uint64_t</span><span class="o" style="font-weight: 600;">></span><span class="p">(</span><span class="n" style="color: #333;">cdata</span><span class="p">);</span></span>
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165
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<pre style="margin: 0;">+<span id="LC165" class="line" lang="cpp"></span>
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166
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<pre style="margin: 0;">+<span id="LC166" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span> <span class="n" style="color: #333;">cn0</span> <span class="o" style="font-weight: 600;">!=</span> <span class="n" style="color: #333;">n0</span> <span class="o" style="font-weight: 600;">||</span> <span class="n" style="color: #333;">cs</span> <span class="o" style="font-weight: 600;">!=</span> <span class="n" style="color: #333;">s</span> <span class="o" style="font-weight: 600;">||</span> <span class="n" style="color: #333;">cn1</span> <span class="o" style="font-weight: 600;">!=</span> <span class="n" style="color: #333;">n1</span> <span class="p">)</span></span>
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167
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<pre style="margin: 0;">+<span id="LC167" class="line" lang="cpp"> <span class="p">{</span></span>
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168
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<pre style="margin: 0;">+<span id="LC168" class="line" lang="cpp"> <span class="n" style="color: #333;">libmaus2</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">exception</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">LibMausException</span> <span class="n" style="color: #333;">lme</span><span class="p">;</span></span>
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169
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<pre style="margin: 0;">+<span id="LC169" class="line" lang="cpp"> <span class="n" style="color: #333;">lme</span><span class="p">.</span><span class="n" style="color: #333;">getStream</span><span class="p">()</span> <span class="o" style="font-weight: 600;"><<</span> <span class="s" style="color: #d14;">"[E] SerialiseHelper::test: failed"</span> <span class="o" style="font-weight: 600;"><<</span> <span class="n" style="color: #333;">std</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">endl</span><span class="p">;</span></span>
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<td class="diff-line-num new new_line" data-linenumber="170" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
170
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<pre style="margin: 0;">+<span id="LC170" class="line" lang="cpp"> <span class="n" style="color: #333;">lme</span><span class="p">.</span><span class="n" style="color: #333;">finish</span><span class="p">();</span></span>
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171
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<pre style="margin: 0;">+<span id="LC171" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">throw</span> <span class="n" style="color: #333;">lme</span><span class="p">;</span></span>
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172
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<pre style="margin: 0;">+<span id="LC172" class="line" lang="cpp"> <span class="p">}</span></span>
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173
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<pre style="margin: 0;">+<span id="LC173" class="line" lang="cpp"> <span class="p">}</span></span>
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<td class="diff-line-num new new_line" data-linenumber="174" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
174
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<pre style="margin: 0;">+<span id="LC174" class="line" lang="cpp"> <span class="p">};</span></span>
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<td class="diff-line-num new new_line" data-linenumber="175" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
175
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<pre style="margin: 0;">+<span id="LC175" class="line" lang="cpp"> <span class="p">}</span></span>
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176
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<pre style="margin: 0;">+<span id="LC176" class="line" lang="cpp"><span class="p">}</span></span>
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<td class="diff-line-num new new_line" data-linenumber="177" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
177
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<pre style="margin: 0;">+<span id="LC177" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#endif</span></span></pre>
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