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<h3>
Olivier Sallou pushed to branch upstream
at <a href="https://salsa.debian.org/med-team/htsjdk">Debian Med / htsjdk</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/htsjdk/-/commit/cd038d1cafaa6e875e65e5fc52cd9cb17ec0fddb">cd038d1c</a></strong>
<div>
<span>by Olivier Sallou</span>
<i>at 2020-05-29T11:07:37+00:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 2.22.0+dfsg</pre>
</li>
</ul>
<h4>25 changed files:</h4>
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<li class="file-stats">
<a href="#e92266778ac0ab35c5df350376a55fe504bb38b8">
.github/ISSUE_TEMPLATE.md
</a>
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<li class="file-stats">
<a href="#b8baf23d7ed7f2b79b86aeb041867428fb196428">
.github/PULL_REQUEST_TEMPLATE.md
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<li class="file-stats">
<a href="#dea01dd89a3b602828e630677fde5d77c06441c8">
.travis.yml
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<li class="file-stats">
<a href="#0834ae016f8fea5cff771880c0be1d55299732ff">
<span class="new-file">
+
CODE_OF_CONDUCT.md
</span>
</a>
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<li class="file-stats">
<a href="#8ec9a00bfd09b3190ac6b22251dbb1aa95a0579d">
README.md
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<li class="file-stats">
<a href="#f07866736216be0ee2aba49e392191aeae700a35">
build.gradle
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<li class="file-stats">
<a href="#025493272b19a1b07b82496d32512c2235facc82">
<span class="new-file">
+
gradle/spotbugs-exclude.xml
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<li class="file-stats">
<a href="#fbe448ebfc3eb2d4e308f6b8b043666f5b57235e">
gradle/wrapper/gradle-wrapper.properties
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<li class="file-stats">
<a href="#5bbfa66edb4db3c7c33c5181f43510990d3307f9">
gradlew
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<li class="file-stats">
<a href="#edd96395115de8a579ba1a96f9f0baa5cdc4ef63">
<span class="new-file">
+
java-style-eclipse.xml
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<li class="file-stats">
<a href="#0391bc3d21ac2789b5fb82c08cddbaf3c5231664">
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java-style-intellij.xml
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<li class="file-stats">
<a href="#c1fd3ddfa5246209d0d5cf69c072e1b6767bfac0">
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scripts/install-samtools.sh
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<li class="file-stats">
<a href="#d8e288b0d8f75509f20e6539873de7018d793c83">
src/main/java/htsjdk/samtools/AbstractBAMFileIndex.java
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<li class="file-stats">
<a href="#9a6a36d42466326e6098d2e7f5a6b7e444babb1e">
src/main/java/htsjdk/samtools/BAMFileConstants.java
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<li class="file-stats">
<a href="#c6a6e96e6adb310d71c0adc7c198275c9add065b">
src/main/java/htsjdk/samtools/BAMFileReader.java
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<li class="file-stats">
<a href="#52776e045edefe05ccd5daccebac565b6665bab9">
src/main/java/htsjdk/samtools/BAMFileWriter.java
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<li class="file-stats">
<a href="#97b4e720fc0f76140072b6fe70ceadf08033e3f8">
src/main/java/htsjdk/samtools/BAMIndex.java
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<li class="file-stats">
<a href="#4e2c4a4af97501c063d3b2cb4394b9e2744f295d">
<span class="new-file">
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src/main/java/htsjdk/samtools/BAMIndexMerger.java
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<li class="file-stats">
<a href="#af937db7c8dbb3bf4d93406ef21f1f461a360cd3">
src/main/java/htsjdk/samtools/BAMIndexMetaData.java
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<li class="file-stats">
<a href="#90e997976369c58ef27774f08aebdeeaaf1eefef">
src/main/java/htsjdk/samtools/BAMIndexer.java
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<li class="file-stats">
<a href="#993dacb3974ba8ae9df67faf7d12d33647fdb7d3">
src/main/java/htsjdk/samtools/BAMRecord.java
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<li class="file-stats">
<a href="#61dad633b446e3eb67d2cdc43e2ebc9dd4878345">
src/main/java/htsjdk/samtools/BAMRecordCodec.java
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<li class="file-stats">
<a href="#52658dc1fe8935b31913c89a0fd28df56adcb045">
src/main/java/htsjdk/samtools/BAMSBIIndexer.java
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</li>
<li class="file-stats">
<a href="#245d1d28d5998e06369185d7eb8576d748ba0fbc">
<span class="new-file">
+
src/main/java/htsjdk/samtools/BAMStartingAtIteratorFilter.java
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</a>
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<li class="file-stats">
<a href="#1b5c5ec9db73278fd19ca3b8fb306dad620f6413">
<span class="new-file">
+
src/main/java/htsjdk/samtools/BAMStreamWriter.java
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<h5>The diff was not included because it is too large.</h5>
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