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<h3>
Malihe Asemani pushed to branch upstream
at <a href="https://salsa.debian.org/med-team/fieldbioinformatics">Debian Med / fieldbioinformatics</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/fieldbioinformatics/-/commit/1e1fac61181e844fee2997802009d00a86bbbd1a">1e1fac61</a></strong>
<div>
<span>by Malihe Asemani</span>
<i>at 2020-06-16T20:55:53+04:30</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 1.1.3</pre>
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</ul>
<h4>30 changed files:</h4>
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<li class="file-stats">
<a href="#a5cc2925ca8258af241be7e5b0381edf30266302">
.gitignore
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<a href="#dea01dd89a3b602828e630677fde5d77c06441c8">
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.travis.yml
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<li class="file-stats">
<a href="#1c497fbb3a46b78edf04cc2a2fa33f67e3ffbe2a">
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CHANGELOG
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<a href="#f6dc58f5e8036353a7ac15516c30ac562e23dc26">
<span class="deleted-file">
−
HISTORY
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<a href="#c335a27a082cc8d17dd36dc0eda3086cb0c9baaa">
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−
INSTALL
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<li class="file-stats">
<a href="#8ec9a00bfd09b3190ac6b22251dbb1aa95a0579d">
README.md
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<a href="#bef45157a43c9e5f469d188810814a4a8ab9f2ed">
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ansible
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<a href="#f57fa63b7b4cdb8ad3853491c587eb00a774b054">
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ansible/README
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<a href="#f76f1a3629cd6966381c16dc038671d27b23f61b">
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ansible/conda.yml
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<a href="#e06b3b7589cd0a5a8119704276bedefa5d0620eb">
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ansible/generate_user_passwords.py
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<a href="#42b4e1e236f5ae1d1148d5112e7d114d7c26ab9e">
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ansible/prepare_laptop.yml
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<li class="file-stats">
<a href="#c80c786d50d67c1ed3befb09626753dc05787d34">
artic/align_trim.py
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<li class="file-stats">
<a href="#bc5c89dd2acbe5e2f0f70649fa723c1a9a3fd573">
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artic/align_trim_n.py
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<li class="file-stats">
<a href="#3108a63c5906d0a916348a213e32babf590231e7">
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artic/align_trim_unit_test.py
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<a href="#0e4b8668b8e507164aac415a4789ec780189d9ab">
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artic/conftest.py
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<li class="file-stats">
<a href="#f1796f793241cec2e804550ba32cc5bb78771bc4">
artic/demultiplex.py
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<a href="#8786ba4cbab871e6a824164afaa5711b992c5789">
artic/align_trim_fasta.py
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artic/deprecated/align_trim_fasta.py
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<li class="file-stats">
<a href="#0ff9f39f1bcf1c7df58fa37c5170a2cacd2e85fe">
artic/checkdir.py
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artic/deprecated/checkdir.py
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<li class="file-stats">
<a href="#e1977c04c23fb22412be0cb24a486d2f2d9bdea6">
artic/collatestats.py
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artic/deprecated/collatestats.py
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<li class="file-stats">
<a href="#624c0fb0a5c27a3c96659cbc19a883ae8558cfc4">
artic/collect_quals.py
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artic/deprecated/collect_quals.py
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<li class="file-stats">
<a href="#e96fa6556b2deeb67216430770f2b8da5e7b2dfe">
artic/collect_times.py
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artic/deprecated/collect_times.py
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<li class="file-stats">
<a href="#15d139411875eaa2ba40f34bd8243f4a5ef34089">
artic/combineruns.py
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artic/deprecated/combineruns.py
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<li class="file-stats">
<a href="#d9d5307f4588b40fa930ef077bea463c7c904aa7">
artic/convertscheme.py
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artic/deprecated/convertscheme.py
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<a href="#23aff239910058d2caf4d24c32465356a008e95a">
artic/copyunprocessedfiles.py
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artic/deprecated/copyunprocessedfiles.py
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<li class="file-stats">
<a href="#3a61c0d540d57b11006efec28f05237869457ca3">
artic/countreads.py
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artic/deprecated/countreads.py
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<a href="#405126571080f8d363a5e9f66b9c35bcdf4f106e">
artic/cov.py
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artic/deprecated/cov.py
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<a href="#6c6b227fc255b5a7e4a5bd09f5e334d0b783b5c6">
artic/coverages.py
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artic/deprecated/coverages.py
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<a href="#5b8c94c10a0bf1a2650546b34cfc8a5ab1dc1f08">
artic/covplot.R
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artic/deprecated/covplot.R
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<li class="file-stats">
<a href="#7ee2cfc1996c16df3df7bf924c679f1dc6e21a5f">
artic/extract_seqs.py
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artic/deprecated/extract_seqs.py
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<li class="file-stats">
<a href="#df871196b8af81fe696663f0076be66059f2a7cd">
artic/fast5_to_consensus
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artic/deprecated/fast5_to_consensus
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<h5>The diff was not included because it is too large.</h5>
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