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<h3>
Étienne Mollier pushed to branch master
at <a href="https://salsa.debian.org/med-team/python-biopython">Debian Med / python-biopython</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/python-biopython/-/commit/398f735585d732101a1df53e292a5d0b07e72b8f">398f7355</a></strong>
<div>
<span>by Etienne Mollier</span>
<i>at 2020-06-16T17:43:59+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">python3-biopython breaks former cnvkit versions
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/python-biopython/-/commit/63c5308df2c8e7674b3f2cf0d1fbe3468215be33">63c5308d</a></strong>
<div>
<span>by Etienne Mollier</span>
<i>at 2020-06-16T22:20:26+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: Ready to upload to unstable
</pre>
</li>
</ul>
<h4>2 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
</a>
</li>
<li class="file-stats">
<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
</a>
</li>
</ul>
<h4>Changes:</h4>
<li id="9c96da0e9f91d7d8937b69b524702c106258f0d1">
<a href="https://salsa.debian.org/med-team/python-biopython/-/compare/e77c5a02e474f3a7ec4f661ad9cbabb7ddbe3e05...63c5308df2c8e7674b3f2cf0d1fbe3468215be33#9c96da0e9f91d7d8937b69b524702c106258f0d1"><strong>debian/changelog</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="mosel"><span class="n" style="color: #333;">python</span><span class="p">-</span><span class="n" style="color: #333;">biopython</span> <span class="p">(</span><span class="m" style="color: #099;">1.77</span><span class="p">+</span><span class="n" style="color: #333;">dfsg</span><span class="p">-</span><span class="m" style="color: #099;">2</span><span class="p">)</span> <span class="n" style="color: #333;">unstable</span><span class="p">;</span> <span class="n" style="color: #333;">urgency</span><span class="p">=</span><span class="n" style="color: #333;">medium</span></span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="mosel"></span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="mosel">  <span class="p">*</span> <span class="n" style="color: #333;">Declared</span> <span class="n" style="color: #333;">python3</span><span class="p">-</span><span class="n" style="color: #333;">biopython</span> <span class="n" style="color: #333;">breaks</span><span class="p">:</span> <span class="n" style="color: #333;">cnvkit</span> <span class="p">(<<</span> <span class="m" style="color: #099;">0.9.7</span><span class="p">-</span><span class="m" style="color: #099;">1</span><span class="p">~)</span> <span class="p">(</span><span class="n" style="color: #333;">Closes</span><span class="p">:</span> <span class="p">#</span><span class="m" style="color: #099;">962944</span><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="mosel"></span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="mosel"> <span class="p">--</span> <span class="n" style="color: #333;">Etienne</span> <span class="n" style="color: #333;">Mollier</span> <span class="p"><</span><span class="n" style="color: #333;">etienne</span><span class="p">.</span><span class="n" style="color: #333;">mollier</span><span class="p">@</span><span class="n" style="color: #333;">mailoo</span><span class="p">.</span><span class="n" style="color: #333;">org</span><span class="p">></span>  <span class="n" style="color: #333;">Tue</span><span class="p">,</span> <span class="m" style="color: #099;">16</span> <span class="n" style="color: #333;">Jun</span> <span class="m" style="color: #099;">2020</span> <span class="m" style="color: #099;">22</span><span class="p">:</span><span class="m" style="color: #099;">12</span><span class="p">:</span><span class="m" style="color: #099;">00</span> <span class="p">+</span><span class="m" style="color: #099;">0200</span></span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="mosel"></span>
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="mosel"><span class="n" style="color: #333;">python</span><span class="p">-</span><span class="n" style="color: #333;">biopython</span> <span class="p">(</span><span class="m" style="color: #099;">1.77</span><span class="p">+</span><span class="n" style="color: #333;">dfsg</span><span class="p">-</span><span class="m" style="color: #099;">1</span><span class="p">)</span> <span class="n" style="color: #333;">unstable</span><span class="p">;</span> <span class="n" style="color: #333;">urgency</span><span class="p">=</span><span class="n" style="color: #333;">medium</span></span>
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<pre style="margin: 0;"> <span id="LC8" class="line" lang="mosel"></span>
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<td class="diff-line-num new_line" data-linenumber="9" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="mosel">  <span class="p">*</span> <span class="n" style="color: #333;">Team</span> <span class="n" style="color: #333;">upload</span><span class="p">.</span></span>
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</li>
<li id="58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
<a href="https://salsa.debian.org/med-team/python-biopython/-/compare/e77c5a02e474f3a7ec4f661ad9cbabb7ddbe3e05...63c5308df2c8e7674b3f2cf0d1fbe3468215be33#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2"><strong>debian/control</strong></a>
<hr>
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<td class="diff-line-num unfold js-unfold new_line" data-linenumber="87" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -87,6 +87,7 @@ Suggests: python3-tk,</td>
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<pre style="margin: 0;"> <span id="LC87" class="line" lang="plaintext">          t-coffee,</span>
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<td class="diff-line-num old_line" data-linenumber="88" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC88" class="line" lang="plaintext">          wise,</span>
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<td class="diff-line-num old_line" data-linenumber="89" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC89" class="line" lang="plaintext">          w3-dtd-mathml</span>
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<pre style="margin: 0;">+<span id="LC90" class="line" lang="plaintext">Breaks: cnvkit (<< 0.9.7-1~)</span>
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<pre style="margin: 0;"> <span id="LC91" class="line" lang="plaintext">Description: Python3 library for bioinformatics</span>
</pre>
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<pre style="margin: 0;"> <span id="LC92" class="line" lang="plaintext"> The Biopython Project is an international association</span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="92" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
92
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<td class="diff-line-num new_line" data-linenumber="93" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
93
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<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC93" class="line" lang="plaintext"> of developers of freely available Python tools for</span>
</pre>
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