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<h3>
Pranav Ballaney pushed to branch master
at <a href="https://salsa.debian.org/med-team/flash">Debian Med / flash</a>
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<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/flash/-/commit/584f55fc8fa1c973bfe9317513aff45af13cd614">584f55fc</a></strong>
<div>
<span>by Pranav Ballaney</span>
<i>at 2020-06-17T05:37:20+05:30</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Add test and reference data
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/flash/-/commit/05215e02c419a24107278568971c73a1b2fc4cac">05215e02</a></strong>
<div>
<span>by Pranav Ballaney</span>
<i>at 2020-06-17T05:37:40+05:30</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Add autopkgtests
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/flash/-/commit/1ccea99f8780cfd5cc2fef10e05b87a487461ee9">1ccea99f</a></strong>
<div>
<span>by Pranav Ballaney</span>
<i>at 2020-06-17T05:42:53+05:30</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Install docs
</pre>
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<h4>11 changed files:</h4>
<ul>
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<a href="#f6a99a1e522a0f5ca122fd9818a9d8536ea59942">
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debian/README.test
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<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
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<a href="#3a5a7cdb36d3ebf45777d0bc382dd46aa7a18f32">
debian/docs
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<a href="#9a14945e16c9144bd18a7ed182b1f8e4a2b50d7c">
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debian/examples
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debian/tests/control
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debian/tests/data/README.test_data
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debian/tests/data/frag_1.fastq
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debian/tests/data/frag_2.fastq
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debian/tests/data/ref/out.hist
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debian/tests/data/ref/out.histogram
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debian/tests/run-unit-test
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<h4>Changes:</h4>
<li id="f6a99a1e522a0f5ca122fd9818a9d8536ea59942">
<a href="https://salsa.debian.org/med-team/flash/-/compare/36402d4b8b1403feda8aae690bc4b3f2f6bca83e...1ccea99f8780cfd5cc2fef10e05b87a487461ee9#f6a99a1e522a0f5ca122fd9818a9d8536ea59942"><strong>debian/README.test</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="php"><span class="nx">Notes</span> <span class="nx">on</span> <span class="nx">how</span> <span class="nx">this</span> <span class="nx">package</span> <span class="nx">can</span> <span class="nx">be</span> <span class="nx">tested</span><span class="o" style="font-weight: 600;">.</span></span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="php"><span class="err" style="color: #a61717; background-color: #e3d2d2;">────────────────────────────────────────</span></span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="php"></span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="php"><span class="nx">This</span> <span class="nx">package</span> <span class="nx">can</span> <span class="nx">be</span> <span class="nx">tested</span> <span class="nx">by</span> <span class="nx">running</span> <span class="nx">the</span> <span class="nx">provided</span> <span class="nx">test</span><span class="o" style="font-weight: 600;">:</span></span>
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<td class="diff-line-num new new_line" data-linenumber="5" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="php"></span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="php"> <span class="nx">sh</span> <span class="nx">run</span><span class="o" style="font-weight: 600;">-</span><span class="nx">unit</span><span class="o" style="font-weight: 600;">-</span><span class="nx">test</span></span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="php"></span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="php"><span class="nx">in</span> <span class="nx">order</span> <span class="nx">to</span> <span class="nx">confirm</span> <span class="nx">its</span> <span class="nx">integrity</span><span class="o" style="font-weight: 600;">.</span></span></pre>
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<li id="9c96da0e9f91d7d8937b69b524702c106258f0d1">
<a href="https://salsa.debian.org/med-team/flash/-/compare/36402d4b8b1403feda8aae690bc4b3f2f6bca83e...1ccea99f8780cfd5cc2fef10e05b87a487461ee9#9c96da0e9f91d7d8937b69b524702c106258f0d1"><strong>debian/changelog</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">flash (1.2.11-2) UNRELEASED; urgency=medium</span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext"> * Add test and reference data</span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="plaintext"> * Add autopkgtests</span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext"> * Install docs</span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext"> -- Pranav Ballaney <ballaneypranav@gmail.com> Wed, 17 Jun 2020 05:37:47 +0530</span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="plaintext">flash (1.2.11-1) unstable; urgency=medium</span>
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="plaintext"> * Initial release (Closes: #961587)</span>
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<a href="https://salsa.debian.org/med-team/flash/-/compare/36402d4b8b1403feda8aae690bc4b3f2f6bca83e...1ccea99f8780cfd5cc2fef10e05b87a487461ee9#3a5a7cdb36d3ebf45777d0bc382dd46aa7a18f32"><strong>debian/docs</strong></a>
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<pre style="margin: 0;"> <span id="LC1" class="line" lang="plaintext">README*</span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="plaintext">debian/README*</span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext">debian/tests/run-unit-test</span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="plaintext">debian/tests/data/README*</span></pre>
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<a href="https://salsa.debian.org/med-team/flash/-/compare/36402d4b8b1403feda8aae690bc4b3f2f6bca83e...1ccea99f8780cfd5cc2fef10e05b87a487461ee9#9a14945e16c9144bd18a7ed182b1f8e4a2b50d7c"><strong>debian/examples</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">debian/tests/data/*</span></pre>
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<a href="https://salsa.debian.org/med-team/flash/-/compare/36402d4b8b1403feda8aae690bc4b3f2f6bca83e...1ccea99f8780cfd5cc2fef10e05b87a487461ee9#83223a554d33ba7e1888274ff8ac43adb8147ba0"><strong>debian/tests/control</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">Tests: run-unit-test</span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="plaintext">Depends: @</span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext">Restrictions: allow-stderr</span></pre>
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<a href="https://salsa.debian.org/med-team/flash/-/compare/36402d4b8b1403feda8aae690bc4b3f2f6bca83e...1ccea99f8780cfd5cc2fef10e05b87a487461ee9#9400395398704fe42840ce7005f56d88482d8867"><strong>debian/tests/data/README.test_data</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">Files: frag* </span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="plaintext">Source: The "No Error" dataset for Flash, avaiable at http://ccb.jhu.edu/software/FLASH/</span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext">Direct URL: http://ccb.jhu.edu/software/FLASH/noError.tar.gz</span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext">Files: ref/*</span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext">Source: Produced by running Flash on the reads described above.</span></pre>
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<a href="https://salsa.debian.org/med-team/flash/-/compare/36402d4b8b1403feda8aae690bc4b3f2f6bca83e...1ccea99f8780cfd5cc2fef10e05b87a487461ee9#0091e30b077c56515d79a5818ad9b41461d2a7a0"><strong>debian/tests/data/frag_1.fastq</strong></a>
The diff for this file was not included because it is too large.
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<li id="d3f0640d5f1fdd35682374ae900c34da91deb7f9">
<a href="https://salsa.debian.org/med-team/flash/-/compare/36402d4b8b1403feda8aae690bc4b3f2f6bca83e...1ccea99f8780cfd5cc2fef10e05b87a487461ee9#d3f0640d5f1fdd35682374ae900c34da91deb7f9"><strong>debian/tests/data/frag_2.fastq</strong></a>
The diff for this file was not included because it is too large.
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<li id="b01e7f20b891386c67446101f91379eca99df873">
<a href="https://salsa.debian.org/med-team/flash/-/compare/36402d4b8b1403feda8aae690bc4b3f2f6bca83e...1ccea99f8780cfd5cc2fef10e05b87a487461ee9#b01e7f20b891386c67446101f91379eca99df873"><strong>debian/tests/data/ref/out.hist</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">121 1</span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="plaintext">125 2</span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext">126 3</span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="plaintext">128 2</span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext">131 4</span>
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6
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext">132 1</span>
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7
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext">133 3</span>
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8
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext">134 3</span>
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9
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="plaintext">135 3</span>
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10
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="plaintext">136 3</span>
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11
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="plaintext">137 4</span>
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12
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="plaintext">138 2</span>
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13
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="plaintext">139 6</span>
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14
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="plaintext">140 7</span>
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15
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="plaintext">141 6</span>
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16
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="plaintext">142 4</span>
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17
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="plaintext">143 6</span>
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18
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<pre style="margin: 0;">+<span id="LC18" class="line" lang="plaintext">144 3</span>
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19
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="plaintext">145 6</span>
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20
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<pre style="margin: 0;">+<span id="LC20" class="line" lang="plaintext">146 7</span>
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21
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<pre style="margin: 0;">+<span id="LC21" class="line" lang="plaintext">147 6</span>
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22
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<pre style="margin: 0;">+<span id="LC22" class="line" lang="plaintext">148 5</span>
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23
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<pre style="margin: 0;">+<span id="LC23" class="line" lang="plaintext">149 9</span>
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24
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<pre style="margin: 0;">+<span id="LC24" class="line" lang="plaintext">150 12</span>
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25
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<pre style="margin: 0;">+<span id="LC25" class="line" lang="plaintext">151 7</span>
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26
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<pre style="margin: 0;">+<span id="LC26" class="line" lang="plaintext">152 7</span>
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27
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<pre style="margin: 0;">+<span id="LC27" class="line" lang="plaintext">153 10</span>
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28
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<pre style="margin: 0;">+<span id="LC28" class="line" lang="plaintext">154 12</span>
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29
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<pre style="margin: 0;">+<span id="LC29" class="line" lang="plaintext">155 14</span>
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30
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<pre style="margin: 0;">+<span id="LC30" class="line" lang="plaintext">156 9</span>
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31
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<pre style="margin: 0;">+<span id="LC31" class="line" lang="plaintext">157 9</span>
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<pre style="margin: 0;">+<span id="LC32" class="line" lang="plaintext">158 14</span>
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<pre style="margin: 0;">+<span id="LC33" class="line" lang="plaintext">159 15</span>
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<pre style="margin: 0;">+<span id="LC34" class="line" lang="plaintext">160 13</span>
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<pre style="margin: 0;">+<span id="LC35" class="line" lang="plaintext">161 18</span>
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36
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<pre style="margin: 0;">+<span id="LC36" class="line" lang="plaintext">162 14</span>
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37
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<pre style="margin: 0;">+<span id="LC37" class="line" lang="plaintext">163 14</span>
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38
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<pre style="margin: 0;">+<span id="LC38" class="line" lang="plaintext">164 13</span>
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39
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<pre style="margin: 0;">+<span id="LC39" class="line" lang="plaintext">165 18</span>
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40
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<pre style="margin: 0;">+<span id="LC40" class="line" lang="plaintext">166 19</span>
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41
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<pre style="margin: 0;">+<span id="LC41" class="line" lang="plaintext">167 13</span>
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42
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<pre style="margin: 0;">+<span id="LC42" class="line" lang="plaintext">168 17</span>
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43
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<pre style="margin: 0;">+<span id="LC43" class="line" lang="plaintext">169 11</span>
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44
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<pre style="margin: 0;">+<span id="LC44" class="line" lang="plaintext">170 19</span>
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45
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<pre style="margin: 0;">+<span id="LC45" class="line" lang="plaintext">171 24</span>
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46
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<pre style="margin: 0;">+<span id="LC46" class="line" lang="plaintext">172 22</span>
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47
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<pre style="margin: 0;">+<span id="LC47" class="line" lang="plaintext">173 26</span>
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48
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<pre style="margin: 0;">+<span id="LC48" class="line" lang="plaintext">174 18</span>
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49
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<pre style="margin: 0;">+<span id="LC49" class="line" lang="plaintext">175 24</span>
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50
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<pre style="margin: 0;">+<span id="LC50" class="line" lang="plaintext">176 22</span>
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51
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<pre style="margin: 0;">+<span id="LC51" class="line" lang="plaintext">177 23</span>
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52
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<pre style="margin: 0;">+<span id="LC52" class="line" lang="plaintext">178 26</span>
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53
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<pre style="margin: 0;">+<span id="LC53" class="line" lang="plaintext">179 32</span>
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54
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<pre style="margin: 0;">+<span id="LC54" class="line" lang="plaintext">180 26</span>
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55
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<pre style="margin: 0;">+<span id="LC55" class="line" lang="plaintext">181 20</span>
</pre>
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56
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<pre style="margin: 0;">+<span id="LC56" class="line" lang="plaintext">182 22</span>
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57
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<pre style="margin: 0;">+<span id="LC57" class="line" lang="plaintext">183 18</span>
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58
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<pre style="margin: 0;">+<span id="LC58" class="line" lang="plaintext">184 22</span>
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<pre style="margin: 0;">+<span id="LC59" class="line" lang="plaintext">185 23</span>
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<pre style="margin: 0;">+<span id="LC60" class="line" lang="plaintext">186 27</span>
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61
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<pre style="margin: 0;">+<span id="LC61" class="line" lang="plaintext">187 30</span>
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62
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<pre style="margin: 0;">+<span id="LC62" class="line" lang="plaintext">188 26</span>
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63
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<pre style="margin: 0;">+<span id="LC63" class="line" lang="plaintext">189 18</span>
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64
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<pre style="margin: 0;">+<span id="LC64" class="line" lang="plaintext">190 22</span></pre>
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<a href="https://salsa.debian.org/med-team/flash/-/compare/36402d4b8b1403feda8aae690bc4b3f2f6bca83e...1ccea99f8780cfd5cc2fef10e05b87a487461ee9#6c424b31cb26055721ba1e44cc7e408a238597ce"><strong>debian/tests/data/ref/out.histogram</strong></a>
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1
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">121 **</span>
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2
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="plaintext">122 </span>
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3
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext">123 </span>
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4
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="plaintext">124 </span>
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5
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext">125 ****</span>
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6
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext">126 ******</span>
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7
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext">127 </span>
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8
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext">128 ****</span>
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9
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="plaintext">129 </span>
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10
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="plaintext">130 </span>
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11
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="plaintext">131 *********</span>
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12
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="plaintext">132 **</span>
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13
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="plaintext">133 ******</span>
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14
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="plaintext">134 ******</span>
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15
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="plaintext">135 ******</span>
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16
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="plaintext">136 ******</span>
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17
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="plaintext">137 *********</span>
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18
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<pre style="margin: 0;">+<span id="LC18" class="line" lang="plaintext">138 ****</span>
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19
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="plaintext">139 *************</span>
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20
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<pre style="margin: 0;">+<span id="LC20" class="line" lang="plaintext">140 ***************</span>
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21
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<pre style="margin: 0;">+<span id="LC21" class="line" lang="plaintext">141 *************</span>
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22
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<pre style="margin: 0;">+<span id="LC22" class="line" lang="plaintext">142 *********</span>
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23
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<pre style="margin: 0;">+<span id="LC23" class="line" lang="plaintext">143 *************</span>
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24
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<pre style="margin: 0;">+<span id="LC24" class="line" lang="plaintext">144 ******</span>
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25
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<pre style="margin: 0;">+<span id="LC25" class="line" lang="plaintext">145 *************</span>
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26
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<pre style="margin: 0;">+<span id="LC26" class="line" lang="plaintext">146 ***************</span>
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27
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<pre style="margin: 0;">+<span id="LC27" class="line" lang="plaintext">147 *************</span>
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28
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<pre style="margin: 0;">+<span id="LC28" class="line" lang="plaintext">148 ***********</span>
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29
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<pre style="margin: 0;">+<span id="LC29" class="line" lang="plaintext">149 ********************</span>
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30
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<pre style="margin: 0;">+<span id="LC30" class="line" lang="plaintext">150 ***************************</span>
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31
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<pre style="margin: 0;">+<span id="LC31" class="line" lang="plaintext">151 ***************</span>
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32
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<pre style="margin: 0;">+<span id="LC32" class="line" lang="plaintext">152 ***************</span>
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33
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<pre style="margin: 0;">+<span id="LC33" class="line" lang="plaintext">153 **********************</span>
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34
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<pre style="margin: 0;">+<span id="LC34" class="line" lang="plaintext">154 ***************************</span>
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35
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<pre style="margin: 0;">+<span id="LC35" class="line" lang="plaintext">155 *******************************</span>
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36
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<pre style="margin: 0;">+<span id="LC36" class="line" lang="plaintext">156 ********************</span>
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37
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<pre style="margin: 0;">+<span id="LC37" class="line" lang="plaintext">157 ********************</span>
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38
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<pre style="margin: 0;">+<span id="LC38" class="line" lang="plaintext">158 *******************************</span>
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39
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<pre style="margin: 0;">+<span id="LC39" class="line" lang="plaintext">159 *********************************</span>
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40
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<pre style="margin: 0;">+<span id="LC40" class="line" lang="plaintext">160 *****************************</span>
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41
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<pre style="margin: 0;">+<span id="LC41" class="line" lang="plaintext">161 ****************************************</span>
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42
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<pre style="margin: 0;">+<span id="LC42" class="line" lang="plaintext">162 *******************************</span>
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43
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<pre style="margin: 0;">+<span id="LC43" class="line" lang="plaintext">163 *******************************</span>
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44
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<pre style="margin: 0;">+<span id="LC44" class="line" lang="plaintext">164 *****************************</span>
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45
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<pre style="margin: 0;">+<span id="LC45" class="line" lang="plaintext">165 ****************************************</span>
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<pre style="margin: 0;">+<span id="LC46" class="line" lang="plaintext">166 ******************************************</span>
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<pre style="margin: 0;">+<span id="LC47" class="line" lang="plaintext">167 *****************************</span>
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<pre style="margin: 0;">+<span id="LC48" class="line" lang="plaintext">168 **************************************</span>
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<pre style="margin: 0;">+<span id="LC49" class="line" lang="plaintext">169 ************************</span>
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<pre style="margin: 0;">+<span id="LC50" class="line" lang="plaintext">170 ******************************************</span>
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51
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<pre style="margin: 0;">+<span id="LC51" class="line" lang="plaintext">171 ******************************************************</span>
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<pre style="margin: 0;">+<span id="LC52" class="line" lang="plaintext">172 *************************************************</span>
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53
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<pre style="margin: 0;">+<span id="LC53" class="line" lang="plaintext">173 **********************************************************</span>
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<pre style="margin: 0;">+<span id="LC54" class="line" lang="plaintext">174 ****************************************</span>
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<pre style="margin: 0;">+<span id="LC55" class="line" lang="plaintext">175 ******************************************************</span>
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<pre style="margin: 0;">+<span id="LC56" class="line" lang="plaintext">176 *************************************************</span>
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<pre style="margin: 0;">+<span id="LC57" class="line" lang="plaintext">177 ***************************************************</span>
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58
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<pre style="margin: 0;">+<span id="LC58" class="line" lang="plaintext">178 **********************************************************</span>
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<pre style="margin: 0;">+<span id="LC59" class="line" lang="plaintext">179 ************************************************************************</span>
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<pre style="margin: 0;">+<span id="LC60" class="line" lang="plaintext">180 **********************************************************</span>
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<pre style="margin: 0;">+<span id="LC61" class="line" lang="plaintext">181 *********************************************</span>
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<pre style="margin: 0;">+<span id="LC62" class="line" lang="plaintext">182 *************************************************</span>
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<pre style="margin: 0;">+<span id="LC63" class="line" lang="plaintext">183 ****************************************</span>
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<pre style="margin: 0;">+<span id="LC64" class="line" lang="plaintext">184 *************************************************</span>
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<pre style="margin: 0;">+<span id="LC65" class="line" lang="plaintext">185 ***************************************************</span>
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<pre style="margin: 0;">+<span id="LC66" class="line" lang="plaintext">186 ************************************************************</span>
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<pre style="margin: 0;">+<span id="LC67" class="line" lang="plaintext">187 *******************************************************************</span>
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68
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<pre style="margin: 0;">+<span id="LC68" class="line" lang="plaintext">188 **********************************************************</span>
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<pre style="margin: 0;">+<span id="LC69" class="line" lang="plaintext">189 ****************************************</span>
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<pre style="margin: 0;">+<span id="LC70" class="line" lang="plaintext">190 *************************************************</span></pre>
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<a href="https://salsa.debian.org/med-team/flash/-/compare/36402d4b8b1403feda8aae690bc4b3f2f6bca83e...1ccea99f8780cfd5cc2fef10e05b87a487461ee9#8c77cc51b09ef1f7b294222180bcdb53ebb70e2f"><strong>debian/tests/run-unit-test</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="shell"><span class="c" style="color: #998; font-style: italic;">#!/bin/bash</span></span>
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2
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="shell"><span class="nb" style="color: #0086b3;">set</span> <span class="nt" style="color: #000080;">-e</span></span>
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3
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="shell"></span>
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4
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="shell"><span class="nv" style="color: #008080;">pkg</span><span class="o" style="font-weight: 600;">=</span>flash</span>
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5
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="shell"></span>
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6
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="shell"><span class="nb" style="color: #0086b3;">export </span><span class="nv" style="color: #008080;">LC_ALL</span><span class="o" style="font-weight: 600;">=</span>C.UTF-8</span>
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7
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="shell"><span class="k" style="font-weight: 600;">if</span> <span class="o" style="font-weight: 600;">[</span> <span class="s2" style="color: #d14;">"</span><span class="k" style="font-weight: 600;">${</span><span class="nv" style="color: #008080;">AUTOPKGTEST_TMP</span><span class="k" style="font-weight: 600;">}</span><span class="s2" style="color: #d14;">"</span> <span class="o" style="font-weight: 600;">=</span> <span class="s2" style="color: #d14;">""</span> <span class="o" style="font-weight: 600;">]</span> <span class="p">;</span> <span class="k" style="font-weight: 600;">then</span></span>
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8
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="shell"><span class="k" style="font-weight: 600;"> </span><span class="nv" style="color: #008080;">AUTOPKGTEST_TMP</span><span class="o" style="font-weight: 600;">=</span><span class="si" style="color: #d14;">$(</span><span class="nb" style="color: #0086b3;">mktemp</span> <span class="nt" style="color: #000080;">-d</span> /tmp/<span class="k" style="font-weight: 600;">${</span><span class="nv" style="color: #008080;">pkg</span><span class="k" style="font-weight: 600;">}</span><span class="nt" style="color: #000080;">-test</span>.XXXXXX<span class="si" style="color: #d14;">)</span></span>
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9
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="shell"> <span class="c" style="color: #998; font-style: italic;"># Double quote below to expand the temporary directory variable now versus</span></span>
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10
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="shell"> <span class="c" style="color: #998; font-style: italic;"># later is on purpose.</span></span>
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11
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="shell"> <span class="c" style="color: #998; font-style: italic;"># shellcheck disable=SC2064</span></span>
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12
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="shell"> <span class="nb" style="color: #0086b3;">trap</span> <span class="s2" style="color: #d14;">"rm -rf </span><span class="k" style="font-weight: 600;">${</span><span class="nv" style="color: #008080;">AUTOPKGTEST_TMP</span><span class="k" style="font-weight: 600;">}</span><span class="s2" style="color: #d14;">"</span> 0 INT QUIT ABRT PIPE TERM</span>
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13
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="shell"><span class="k" style="font-weight: 600;">fi</span></span>
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14
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="shell"></span>
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15
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="shell"><span class="nb" style="color: #0086b3;">cp</span> <span class="nt" style="color: #000080;">-a</span> /usr/share/doc/<span class="k" style="font-weight: 600;">${</span><span class="nv" style="color: #008080;">pkg</span><span class="k" style="font-weight: 600;">}</span>/examples/<span class="k" style="font-weight: 600;">*</span> <span class="s2" style="color: #d14;">"</span><span class="k" style="font-weight: 600;">${</span><span class="nv" style="color: #008080;">AUTOPKGTEST_TMP</span><span class="k" style="font-weight: 600;">}</span><span class="s2" style="color: #d14;">"</span></span>
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16
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="shell"></span>
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="shell"><span class="nb" style="color: #0086b3;">cd</span> <span class="s2" style="color: #d14;">"</span><span class="k" style="font-weight: 600;">${</span><span class="nv" style="color: #008080;">AUTOPKGTEST_TMP</span><span class="k" style="font-weight: 600;">}</span><span class="s2" style="color: #d14;">"</span></span>
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18
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<pre style="margin: 0;">+<span id="LC18" class="line" lang="shell"></span>
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19
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="shell"><span class="nb" style="color: #0086b3;">gunzip</span> <span class="nt" style="color: #000080;">-r</span> <span class="k" style="font-weight: 600;">*</span></span>
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20
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<pre style="margin: 0;">+<span id="LC20" class="line" lang="shell">flash frag_1.fastq frag_2.fastq 2>&1 | <span class="nb" style="color: #0086b3;">tee </span>flash.log</span>
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21
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<pre style="margin: 0;">+<span id="LC21" class="line" lang="shell"></span>
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22
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<pre style="margin: 0;">+<span id="LC22" class="line" lang="shell"><span class="k" style="font-weight: 600;">for </span>f <span class="k" style="font-weight: 600;">in </span>out.hist<span class="k" style="font-weight: 600;">*</span></span>
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23
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<pre style="margin: 0;">+<span id="LC23" class="line" lang="shell"><span class="k" style="font-weight: 600;">do</span></span>
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<td class="diff-line-num new new_line" data-linenumber="24" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
24
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<pre style="margin: 0;">+<span id="LC24" class="line" lang="shell"><span class="k" style="font-weight: 600;"> </span><span class="nb" style="color: #0086b3;">echo </span>Comparing <span class="nv" style="color: #008080;">$f</span> ref/<span class="nv" style="color: #008080;">$f</span></span>
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<td class="diff-line-num new new_line" data-linenumber="25" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
25
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<pre style="margin: 0;">+<span id="LC25" class="line" lang="shell"> diff <span class="nt" style="color: #000080;">-y</span> <span class="nt" style="color: #000080;">--suppress-common-lines</span> <span class="nv" style="color: #008080;">$f</span> ref/<span class="nv" style="color: #008080;">$f</span></span>
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<td class="diff-line-num new new_line" data-linenumber="26" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
26
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<pre style="margin: 0;">+<span id="LC26" class="line" lang="shell"><span class="k" style="font-weight: 600;">done</span></span></pre>
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<td class="line_content match" style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">\ No newline at end of file</td>
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