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<h3>
Antoni Villalonga pushed to branch master
at <a href="https://salsa.debian.org/med-team/pairtools">Debian Med / pairtools</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/pairtools/-/commit/fe90c3d0c60319c3ce5394ab5a478af6e63fd861">fe90c3d0</a></strong>
<div>
<span>by Antoni Villalonga</span>
<i>at 2020-06-20T01:51:46+02:00</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Autopkgtests
</pre>
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<h4>4 changed files:</h4>
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<li class="file-stats">
<a href="#bc34014ab4b9a49dd7a27bdd8d352912607c3a96">
debian/patches/series
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<li class="file-stats">
<a href="#f89e8594a2f0079ae0fedc7395c4f844933fd0d4">
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+
debian/patches/tests-to-python3
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<li class="file-stats">
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debian/tests/control
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<li class="file-stats">
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debian/tests/upstream-tests
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<h4>Changes:</h4>
<li id="bc34014ab4b9a49dd7a27bdd8d352912607c3a96">
<a href="https://salsa.debian.org/med-team/pairtools/-/commit/fe90c3d0c60319c3ce5394ab5a478af6e63fd861#bc34014ab4b9a49dd7a27bdd8d352912607c3a96"><strong>debian/patches/series</strong></a>
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<pre style="margin: 0;"> <span id="LC1" class="line" lang="plaintext">makefile</span>
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="plaintext">fix-spelling</span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext">tests-to-python3</span></pre>
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<li id="f89e8594a2f0079ae0fedc7395c4f844933fd0d4">
<a href="https://salsa.debian.org/med-team/pairtools/-/commit/fe90c3d0c60319c3ce5394ab5a478af6e63fd861#f89e8594a2f0079ae0fedc7395c4f844933fd0d4"><strong>debian/patches/tests-to-python3</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="diff"><span class="p">Description: Tests to Python3</span></span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="diff"><span class="p">Author: Antoni Villalonga i Noceras <antoni@friki.cat></span></span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="diff"><span class="p">Last-Update: Wed, 18 Jun 2020 22:31:00 +0200</span></span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="diff"></span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="diff">--- a/tests/test_dedup.py</span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/tests/test_dedup.py</span></span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="diff"><span class="p">@@ -22,7 +22,7 @@</span></span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="diff"> def setup_func():</span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="diff"> try:</span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="diff"> subprocess.check_output(</span>
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<td class="diff-line-num new new_line" data-linenumber="11" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- ['python',</span></span>
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ ['python3',</span></span>
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<td class="diff-line-num new new_line" data-linenumber="13" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="diff"> '-m',</span>
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="diff"> 'pairtools',</span>
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="diff"> 'dedup',</span>
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="diff"><span class="p">@@ -38,7 +38,7 @@</span></span>
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="diff"> ],</span>
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<pre style="margin: 0;">+<span id="LC18" class="line" lang="diff"> )</span>
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="diff"> subprocess.check_output(</span>
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<pre style="margin: 0;">+<span id="LC20" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- ['python',</span></span>
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21
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<pre style="margin: 0;">+<span id="LC21" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ ['python3',</span></span>
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22
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<pre style="margin: 0;">+<span id="LC22" class="line" lang="diff"> '-m',</span>
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23
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<pre style="margin: 0;">+<span id="LC23" class="line" lang="diff"> 'pairtools',</span>
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24
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<pre style="margin: 0;">+<span id="LC24" class="line" lang="diff"> 'dedup',</span>
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25
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<pre style="margin: 0;">+<span id="LC25" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/tests/test_filterbycov.py</span></span>
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26
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<pre style="margin: 0;">+<span id="LC26" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/tests/test_filterbycov.py</span></span>
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27
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<pre style="margin: 0;">+<span id="LC27" class="line" lang="diff"><span class="p">@@ -40,7 +40,7 @@</span></span>
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28
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<pre style="margin: 0;">+<span id="LC28" class="line" lang="diff"> try:</span>
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29
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<pre style="margin: 0;">+<span id="LC29" class="line" lang="diff"> for p in params:</span>
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30
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<pre style="margin: 0;">+<span id="LC30" class="line" lang="diff"> subprocess.check_output(</span>
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31
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<pre style="margin: 0;">+<span id="LC31" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- ['python',</span></span>
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32
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<pre style="margin: 0;">+<span id="LC32" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ ['python3',</span></span>
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33
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<pre style="margin: 0;">+<span id="LC33" class="line" lang="diff"> '-m',</span>
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34
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<pre style="margin: 0;">+<span id="LC34" class="line" lang="diff"> 'pairtools',</span>
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35
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<pre style="margin: 0;">+<span id="LC35" class="line" lang="diff"> 'filterbycov',</span>
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36
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<pre style="margin: 0;">+<span id="LC36" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/tests/test_flip.py</span></span>
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37
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<pre style="margin: 0;">+<span id="LC37" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/tests/test_flip.py</span></span>
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38
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<pre style="margin: 0;">+<span id="LC38" class="line" lang="diff"><span class="p">@@ -12,7 +12,7 @@</span></span>
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39
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<pre style="margin: 0;">+<span id="LC39" class="line" lang="diff"> def test_flip():</span>
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40
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<pre style="margin: 0;">+<span id="LC40" class="line" lang="diff"> try:</span>
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41
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<pre style="margin: 0;">+<span id="LC41" class="line" lang="diff"> result = subprocess.check_output(</span>
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42
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<pre style="margin: 0;">+<span id="LC42" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- ['python',</span></span>
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43
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<pre style="margin: 0;">+<span id="LC43" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ ['python3',</span></span>
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44
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<pre style="margin: 0;">+<span id="LC44" class="line" lang="diff"> '-m',</span>
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45
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<pre style="margin: 0;">+<span id="LC45" class="line" lang="diff"> 'pairtools',</span>
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<pre style="margin: 0;">+<span id="LC46" class="line" lang="diff"> 'flip',</span>
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47
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<pre style="margin: 0;">+<span id="LC47" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/tests/test_markasdup.py</span></span>
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48
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<pre style="margin: 0;">+<span id="LC48" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/tests/test_markasdup.py</span></span>
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49
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<pre style="margin: 0;">+<span id="LC49" class="line" lang="diff"><span class="p">@@ -10,7 +10,7 @@</span></span>
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50
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<pre style="margin: 0;">+<span id="LC50" class="line" lang="diff"> mock_pairsam_path = os.path.join(testdir, 'data', 'mock.pairsam')</span>
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51
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<pre style="margin: 0;">+<span id="LC51" class="line" lang="diff"> try:</span>
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52
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<pre style="margin: 0;">+<span id="LC52" class="line" lang="diff"> result = subprocess.check_output(</span>
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53
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<pre style="margin: 0;">+<span id="LC53" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- ['python',</span></span>
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54
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<pre style="margin: 0;">+<span id="LC54" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ ['python3',</span></span>
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55
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<pre style="margin: 0;">+<span id="LC55" class="line" lang="diff"> '-m',</span>
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56
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<pre style="margin: 0;">+<span id="LC56" class="line" lang="diff"> 'pairtools',</span>
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57
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<pre style="margin: 0;">+<span id="LC57" class="line" lang="diff"> 'markasdup',</span>
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58
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<pre style="margin: 0;">+<span id="LC58" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/tests/test_merge.py</span></span>
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59
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<pre style="margin: 0;">+<span id="LC59" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/tests/test_merge.py</span></span>
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60
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<pre style="margin: 0;">+<span id="LC60" class="line" lang="diff"><span class="p">@@ -17,7 +17,7 @@</span></span>
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61
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<pre style="margin: 0;">+<span id="LC61" class="line" lang="diff"> def setup_func():</span>
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62
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<pre style="margin: 0;">+<span id="LC62" class="line" lang="diff"> try:</span>
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63
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<pre style="margin: 0;">+<span id="LC63" class="line" lang="diff"> subprocess.check_output(</span>
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64
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<pre style="margin: 0;">+<span id="LC64" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- ['python',</span></span>
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65
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<pre style="margin: 0;">+<span id="LC65" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ ['python3',</span></span>
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66
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<pre style="margin: 0;">+<span id="LC66" class="line" lang="diff"> '-m',</span>
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67
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<pre style="margin: 0;">+<span id="LC67" class="line" lang="diff"> 'pairtools',</span>
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68
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<pre style="margin: 0;">+<span id="LC68" class="line" lang="diff"> 'sort',</span>
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69
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<pre style="margin: 0;">+<span id="LC69" class="line" lang="diff"><span class="p">@@ -28,7 +28,7 @@</span></span>
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70
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<pre style="margin: 0;">+<span id="LC70" class="line" lang="diff"> )</span>
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<pre style="margin: 0;">+<span id="LC71" class="line" lang="diff"> </span>
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72
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<pre style="margin: 0;">+<span id="LC72" class="line" lang="diff"> subprocess.check_output(</span>
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73
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<pre style="margin: 0;">+<span id="LC73" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- ['python',</span></span>
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74
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<pre style="margin: 0;">+<span id="LC74" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ ['python3',</span></span>
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75
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<pre style="margin: 0;">+<span id="LC75" class="line" lang="diff"> '-m',</span>
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76
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<pre style="margin: 0;">+<span id="LC76" class="line" lang="diff"> 'pairtools',</span>
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77
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<pre style="margin: 0;">+<span id="LC77" class="line" lang="diff"> 'sort',</span>
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78
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<pre style="margin: 0;">+<span id="LC78" class="line" lang="diff"><span class="p">@@ -49,7 +49,7 @@</span></span>
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79
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<pre style="margin: 0;">+<span id="LC79" class="line" lang="diff"> def test_mock_pairsam():</span>
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80
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<pre style="margin: 0;">+<span id="LC80" class="line" lang="diff"> try:</span>
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81
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<pre style="margin: 0;">+<span id="LC81" class="line" lang="diff"> result = subprocess.check_output(</span>
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82
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<pre style="margin: 0;">+<span id="LC82" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- ['python',</span></span>
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83
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<pre style="margin: 0;">+<span id="LC83" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ ['python3',</span></span>
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84
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<pre style="margin: 0;">+<span id="LC84" class="line" lang="diff"> '-m',</span>
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85
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<pre style="margin: 0;">+<span id="LC85" class="line" lang="diff"> 'pairtools',</span>
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86
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<pre style="margin: 0;">+<span id="LC86" class="line" lang="diff"> 'merge',</span>
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87
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<pre style="margin: 0;">+<span id="LC87" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/tests/test_parse.py</span></span>
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88
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<pre style="margin: 0;">+<span id="LC88" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/tests/test_parse.py</span></span>
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89
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<pre style="margin: 0;">+<span id="LC89" class="line" lang="diff"><span class="p">@@ -172,7 +172,7 @@</span></span>
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90
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<pre style="margin: 0;">+<span id="LC90" class="line" lang="diff"> mock_chroms_path = os.path.join(testdir, 'data', 'mock.chrom.sizes')</span>
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91
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<pre style="margin: 0;">+<span id="LC91" class="line" lang="diff"> try:</span>
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92
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<pre style="margin: 0;">+<span id="LC92" class="line" lang="diff"> result = subprocess.check_output(</span>
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93
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<pre style="margin: 0;">+<span id="LC93" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- ['python',</span></span>
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94
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<pre style="margin: 0;">+<span id="LC94" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ ['python3',</span></span>
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95
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<pre style="margin: 0;">+<span id="LC95" class="line" lang="diff"> '-m',</span>
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96
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<pre style="margin: 0;">+<span id="LC96" class="line" lang="diff"> 'pairtools',</span>
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<td class="diff-line-num new new_line" data-linenumber="97" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
97
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<pre style="margin: 0;">+<span id="LC97" class="line" lang="diff"> 'parse',</span>
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98
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<pre style="margin: 0;">+<span id="LC98" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/tests/test_select.py</span></span>
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99
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<pre style="margin: 0;">+<span id="LC99" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/tests/test_select.py</span></span>
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100
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<pre style="margin: 0;">+<span id="LC100" class="line" lang="diff"><span class="p">@@ -12,7 +12,7 @@</span></span>
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101
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<pre style="margin: 0;">+<span id="LC101" class="line" lang="diff"> def test_preserve():</span>
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102
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<pre style="margin: 0;">+<span id="LC102" class="line" lang="diff"> try:</span>
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103
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<pre style="margin: 0;">+<span id="LC103" class="line" lang="diff"> result = subprocess.check_output(</span>
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<td class="diff-line-num new new_line" data-linenumber="104" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
104
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<pre style="margin: 0;">+<span id="LC104" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- ['python',</span></span>
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105
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<pre style="margin: 0;">+<span id="LC105" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ ['python3',</span></span>
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106
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<pre style="margin: 0;">+<span id="LC106" class="line" lang="diff"> '-m',</span>
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<td class="diff-line-num new new_line" data-linenumber="107" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
107
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<pre style="margin: 0;">+<span id="LC107" class="line" lang="diff"> 'pairtools',</span>
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108
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<pre style="margin: 0;">+<span id="LC108" class="line" lang="diff"> 'select',</span>
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109
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<pre style="margin: 0;">+<span id="LC109" class="line" lang="diff"><span class="p">@@ -35,7 +35,7 @@</span></span>
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110
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<pre style="margin: 0;">+<span id="LC110" class="line" lang="diff"> def test_equal():</span>
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<td class="diff-line-num new new_line" data-linenumber="111" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
111
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<pre style="margin: 0;">+<span id="LC111" class="line" lang="diff"> try:</span>
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112
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<pre style="margin: 0;">+<span id="LC112" class="line" lang="diff"> result = subprocess.check_output(</span>
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113
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<pre style="margin: 0;">+<span id="LC113" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- ['python',</span></span>
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114
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<pre style="margin: 0;">+<span id="LC114" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ ['python3',</span></span>
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115
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<pre style="margin: 0;">+<span id="LC115" class="line" lang="diff"> '-m',</span>
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116
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<pre style="margin: 0;">+<span id="LC116" class="line" lang="diff"> 'pairtools',</span>
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<td class="diff-line-num new new_line" data-linenumber="117" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
117
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<pre style="margin: 0;">+<span id="LC117" class="line" lang="diff"> 'select',</span>
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<td class="diff-line-num new new_line" data-linenumber="118" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
118
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<pre style="margin: 0;">+<span id="LC118" class="line" lang="diff"><span class="p">@@ -62,7 +62,7 @@</span></span>
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119
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<pre style="margin: 0;">+<span id="LC119" class="line" lang="diff"> def test_csv():</span>
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120
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<pre style="margin: 0;">+<span id="LC120" class="line" lang="diff"> try:</span>
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121
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<pre style="margin: 0;">+<span id="LC121" class="line" lang="diff"> result = subprocess.check_output(</span>
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122
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<pre style="margin: 0;">+<span id="LC122" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- ['python',</span></span>
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<td class="diff-line-num new new_line" data-linenumber="123" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
123
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<pre style="margin: 0;">+<span id="LC123" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ ['python3',</span></span>
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124
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<pre style="margin: 0;">+<span id="LC124" class="line" lang="diff"> '-m',</span>
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<td class="diff-line-num new new_line" data-linenumber="125" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
125
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<pre style="margin: 0;">+<span id="LC125" class="line" lang="diff"> 'pairtools',</span>
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<td class="diff-line-num new new_line" data-linenumber="126" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
126
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<pre style="margin: 0;">+<span id="LC126" class="line" lang="diff"> 'select',</span>
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<td class="diff-line-num new new_line" data-linenumber="127" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
127
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<pre style="margin: 0;">+<span id="LC127" class="line" lang="diff"><span class="p">@@ -89,7 +89,7 @@</span></span>
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<td class="diff-line-num new new_line" data-linenumber="128" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
128
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<pre style="margin: 0;">+<span id="LC128" class="line" lang="diff"> def test_wildcard():</span>
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<td class="diff-line-num new new_line" data-linenumber="129" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
129
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<pre style="margin: 0;">+<span id="LC129" class="line" lang="diff"> try:</span>
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130
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<pre style="margin: 0;">+<span id="LC130" class="line" lang="diff"> result = subprocess.check_output(</span>
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131
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<pre style="margin: 0;">+<span id="LC131" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- ['python',</span></span>
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132
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<pre style="margin: 0;">+<span id="LC132" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ ['python3',</span></span>
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<td class="diff-line-num new new_line" data-linenumber="133" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
133
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<pre style="margin: 0;">+<span id="LC133" class="line" lang="diff"> '-m',</span>
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134
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<pre style="margin: 0;">+<span id="LC134" class="line" lang="diff"> 'pairtools',</span>
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<td class="diff-line-num new new_line" data-linenumber="135" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
135
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<pre style="margin: 0;">+<span id="LC135" class="line" lang="diff"> 'select',</span>
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136
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<pre style="margin: 0;">+<span id="LC136" class="line" lang="diff"><span class="p">@@ -116,7 +116,7 @@</span></span>
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137
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<pre style="margin: 0;">+<span id="LC137" class="line" lang="diff"> def test_regex():</span>
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138
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<pre style="margin: 0;">+<span id="LC138" class="line" lang="diff"> try:</span>
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<td class="diff-line-num new new_line" data-linenumber="139" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
139
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<pre style="margin: 0;">+<span id="LC139" class="line" lang="diff"> result = subprocess.check_output(</span>
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140
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<pre style="margin: 0;">+<span id="LC140" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- ['python',</span></span>
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<td class="diff-line-num new new_line" data-linenumber="141" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
141
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<pre style="margin: 0;">+<span id="LC141" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ ['python3',</span></span>
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<td class="diff-line-num new new_line" data-linenumber="142" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
142
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<pre style="margin: 0;">+<span id="LC142" class="line" lang="diff"> '-m',</span>
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<td class="diff-line-num new new_line" data-linenumber="143" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
143
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<pre style="margin: 0;">+<span id="LC143" class="line" lang="diff"> 'pairtools',</span>
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<td class="diff-line-num new new_line" data-linenumber="144" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
144
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<pre style="margin: 0;">+<span id="LC144" class="line" lang="diff"> 'select',</span>
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<td class="diff-line-num new new_line" data-linenumber="145" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
145
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<pre style="margin: 0;">+<span id="LC145" class="line" lang="diff"><span class="p">@@ -142,7 +142,7 @@</span></span>
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<td class="diff-line-num new new_line" data-linenumber="146" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
146
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<pre style="margin: 0;">+<span id="LC146" class="line" lang="diff"> def test_chrom_subset():</span>
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<td class="diff-line-num new new_line" data-linenumber="147" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
147
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<pre style="margin: 0;">+<span id="LC147" class="line" lang="diff"> try:</span>
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<td class="diff-line-num new new_line" data-linenumber="148" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
148
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<pre style="margin: 0;">+<span id="LC148" class="line" lang="diff"> result = subprocess.check_output(</span>
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<td class="diff-line-num new new_line" data-linenumber="149" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
149
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<pre style="margin: 0;">+<span id="LC149" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- ['python',</span></span>
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150
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<pre style="margin: 0;">+<span id="LC150" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ ['python3',</span></span>
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151
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<pre style="margin: 0;">+<span id="LC151" class="line" lang="diff"> '-m',</span>
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152
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<pre style="margin: 0;">+<span id="LC152" class="line" lang="diff"> 'pairtools',</span>
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<td class="diff-line-num new new_line" data-linenumber="153" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
153
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<pre style="margin: 0;">+<span id="LC153" class="line" lang="diff"> 'select',</span>
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154
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<pre style="margin: 0;">+<span id="LC154" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/tests/test_sort.py</span></span>
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155
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<pre style="margin: 0;">+<span id="LC155" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/tests/test_sort.py</span></span>
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156
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<pre style="margin: 0;">+<span id="LC156" class="line" lang="diff"><span class="p">@@ -10,7 +10,7 @@</span></span>
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157
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<pre style="margin: 0;">+<span id="LC157" class="line" lang="diff"> mock_pairsam_path = os.path.join(testdir, 'data', 'mock.pairsam')</span>
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158
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<pre style="margin: 0;">+<span id="LC158" class="line" lang="diff"> try:</span>
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159
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<pre style="margin: 0;">+<span id="LC159" class="line" lang="diff"> result = subprocess.check_output(</span>
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160
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<pre style="margin: 0;">+<span id="LC160" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- ['python',</span></span>
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161
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<pre style="margin: 0;">+<span id="LC161" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ ['python3',</span></span>
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162
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<pre style="margin: 0;">+<span id="LC162" class="line" lang="diff"> '-m',</span>
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163
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<pre style="margin: 0;">+<span id="LC163" class="line" lang="diff"> 'pairtools',</span>
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164
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<pre style="margin: 0;">+<span id="LC164" class="line" lang="diff"> 'sort',</span>
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165
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<pre style="margin: 0;">+<span id="LC165" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/tests/test_split.py</span></span>
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166
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<pre style="margin: 0;">+<span id="LC166" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/tests/test_split.py</span></span>
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167
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<pre style="margin: 0;">+<span id="LC167" class="line" lang="diff"><span class="p">@@ -16,7 +16,7 @@</span></span>
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168
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<pre style="margin: 0;">+<span id="LC168" class="line" lang="diff"> def setup_func():</span>
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169
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<pre style="margin: 0;">+<span id="LC169" class="line" lang="diff"> try:</span>
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170
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<pre style="margin: 0;">+<span id="LC170" class="line" lang="diff"> subprocess.check_output(</span>
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171
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<pre style="margin: 0;">+<span id="LC171" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- ['python',</span></span>
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172
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<pre style="margin: 0;">+<span id="LC172" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ ['python3',</span></span>
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173
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<pre style="margin: 0;">+<span id="LC173" class="line" lang="diff"> '-m',</span>
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174
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<pre style="margin: 0;">+<span id="LC174" class="line" lang="diff"> 'pairtools',</span>
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175
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<pre style="margin: 0;">+<span id="LC175" class="line" lang="diff"> 'split',</span>
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176
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<pre style="margin: 0;">+<span id="LC176" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/tests/test_stats.py</span></span>
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177
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<pre style="margin: 0;">+<span id="LC177" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/tests/test_stats.py</span></span>
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178
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<pre style="margin: 0;">+<span id="LC178" class="line" lang="diff"><span class="p">@@ -10,7 +10,7 @@</span></span>
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179
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<pre style="margin: 0;">+<span id="LC179" class="line" lang="diff"> mock_pairsam_path = os.path.join(testdir, 'data', 'mock.pairsam')</span>
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180
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<pre style="margin: 0;">+<span id="LC180" class="line" lang="diff"> try:</span>
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181
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<pre style="margin: 0;">+<span id="LC181" class="line" lang="diff"> result = subprocess.check_output(</span>
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182
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<pre style="margin: 0;">+<span id="LC182" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- ['python',</span></span>
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183
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<pre style="margin: 0;">+<span id="LC183" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ ['python3',</span></span>
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184
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<pre style="margin: 0;">+<span id="LC184" class="line" lang="diff"> '-m',</span>
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185
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<pre style="margin: 0;">+<span id="LC185" class="line" lang="diff"> 'pairtools',</span>
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186
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<pre style="margin: 0;">+<span id="LC186" class="line" lang="diff"> 'stats',</span></pre>
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<li id="83223a554d33ba7e1888274ff8ac43adb8147ba0">
<a href="https://salsa.debian.org/med-team/pairtools/-/commit/fe90c3d0c60319c3ce5394ab5a478af6e63fd861#83223a554d33ba7e1888274ff8ac43adb8147ba0"><strong>debian/tests/control</strong></a>
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1
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">Tests: upstream-tests</span>
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2
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="plaintext">Depends: python3-pairtools</span>
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3
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext">Restrictions: allow-stderr, breaks-testbed</span></pre>
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<a href="https://salsa.debian.org/med-team/pairtools/-/commit/fe90c3d0c60319c3ce5394ab5a478af6e63fd861#17ebdc965357752902ffb09649f419dd5677753c"><strong>debian/tests/upstream-tests</strong></a>
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1
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="shell"><span class="c" style="color: #998; font-style: italic;">#!/usr/bin/env bash</span></span>
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2
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="shell"></span>
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3
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="shell"><span class="nb" style="color: #0086b3;">set</span> <span class="nt" style="color: #000080;">-ev</span></span>
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4
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="shell"></span>
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5
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="shell"><span class="nb" style="color: #0086b3;">rm</span> <span class="nt" style="color: #000080;">-rf</span> pairtools</span>
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6
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="shell"></span>
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7
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="shell">nosetests3</span>
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8
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="shell"></span>
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9
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="shell"><span class="nb" style="color: #0086b3;">echo </span>ALL PASS</span></pre>
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