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<h3>
Shayan Doust pushed to branch master
at <a href="https://salsa.debian.org/med-team/libpll-2">Debian Med / libpll-2</a>
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<h4>
Commits:
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<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/libpll-2/-/commit/8e3c68cb290197b64a888bc754c1d17d52d02e10">8e3c68cb</a></strong>
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<span>by Shayan Doust</span>
<i>at 2020-06-20T19:23:31+01:00</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">libpll2 related packages defined in control
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<h4>1 changed file:</h4>
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<li class="file-stats">
<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
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<h4>Changes:</h4>
<li id="58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
<a href="https://salsa.debian.org/med-team/libpll-2/-/commit/8e3c68cb290197b64a888bc754c1d17d52d02e10#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2"><strong>debian/control</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -3,14 +3,19 @@ Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.</td>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext">Uploaders: Shayan Doust <hello@shayandoust.me></span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext">Section: science</span>
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="plaintext">Priority: optional</span>
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<pre style="margin: 0;">-<span id="LC6" class="line" lang="plaintext">Build-Depends: debhelper-compat (= 13)</span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext">Build-Depends: debhelper-compat (= 13),</span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext"> d-shlibs,</span>
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<td class="diff-line-num new new_line" data-linenumber="8" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext"> bison,</span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="plaintext"> flex,</span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="plaintext"> autoconf-archive</span>
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<td class="diff-line-num new_line" data-linenumber="11" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="plaintext">Standards-Version: 4.5.0</span>
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<td class="diff-line-num new_line" data-linenumber="12" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC12" class="line" lang="plaintext">Vcs-Browser: https://salsa.debian.org/med-team/libpll-2</span>
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<td class="diff-line-num new_line" data-linenumber="13" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC13" class="line" lang="plaintext">Vcs-Git: https://salsa.debian.org/med-team/libpll-2.git</span>
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<td class="diff-line-num new_line" data-linenumber="14" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC14" class="line" lang="plaintext">Homepage: https://github.com/xflouris/libpll-2</span>
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<td class="diff-line-num old_line" data-linenumber="11" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="diff-line-num new_line" data-linenumber="15" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC15" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">-<span id="LC12" class="line" lang="plaintext">Package: libpll<span class="idiff left right">-2</span></span>
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<td class="diff-line-num new new_line" data-linenumber="16" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="plaintext">Package: libpll<span class="idiff left right">2-0</span></span>
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<pre style="margin: 0;"> <span id="LC17" class="line" lang="plaintext">Architecture: any</span>
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<pre style="margin: 0;">+<span id="LC18" class="line" lang="plaintext">Section: libs</span>
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<pre style="margin: 0;"> <span id="LC19" class="line" lang="plaintext">Depends: ${shlibs:Depends},</span>
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<pre style="margin: 0;"> <span id="LC20" class="line" lang="plaintext"> ${misc:Depends}</span>
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<pre style="margin: 0;"> <span id="LC21" class="line" lang="plaintext">Description: Phylogenetic Likelihood Library 2</span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="27" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="32" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -27,3 +32,28 @@ Description: Phylogenetic Likelihood Library 2</td>
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<pre style="margin: 0;"> <span id="LC32" class="line" lang="plaintext"> .</span>
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<pre style="margin: 0;"> <span id="LC33" class="line" lang="plaintext"> libpll-2 is the new official fork of libpll. It implements site repeats</span>
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<pre style="margin: 0;"> <span id="LC34" class="line" lang="plaintext"> to speed up computations.</span>
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<pre style="margin: 0;">+<span id="LC35" class="line" lang="plaintext"> .</span>
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<pre style="margin: 0;">+<span id="LC36" class="line" lang="plaintext"> This package contains the dynamic library.</span>
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<pre style="margin: 0;">+<span id="LC37" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC38" class="line" lang="plaintext">Package: libpll2-dev</span>
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<pre style="margin: 0;">+<span id="LC39" class="line" lang="plaintext">Architecture: any</span>
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<pre style="margin: 0;">+<span id="LC40" class="line" lang="plaintext">Section: libdevel</span>
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<pre style="margin: 0;">+<span id="LC41" class="line" lang="plaintext">Depends: ${shlibs:Depends},</span>
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<pre style="margin: 0;">+<span id="LC42" class="line" lang="plaintext"> ${misc:Depends},</span>
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<pre style="margin: 0;">+<span id="LC43" class="line" lang="plaintext"> libpll2-0 (= ${binary:Version})</span>
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<pre style="margin: 0;">+<span id="LC44" class="line" lang="plaintext">Description: Phylogenetic Likelihood Library 2</span>
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<pre style="margin: 0;">+<span id="LC45" class="line" lang="plaintext"> PLL is a highly optimised, parallelised software library to ease the</span>
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<pre style="margin: 0;">+<span id="LC46" class="line" lang="plaintext"> development of new software tools dealing with phylogenetic inference.</span>
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<pre style="margin: 0;">+<span id="LC47" class="line" lang="plaintext"> .</span>
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<pre style="margin: 0;">+<span id="LC48" class="line" lang="plaintext"> Among the function included in PLL are parsing multiple sequence</span>
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<pre style="margin: 0;">+<span id="LC49" class="line" lang="plaintext"> alignments (MSA) from PHYLIP and FASTA files, reading Newick trees,</span>
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<pre style="margin: 0;">+<span id="LC50" class="line" lang="plaintext"> performing topological moves such as SPR and NNI, model optimisation,</span>
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<pre style="margin: 0;">+<span id="LC51" class="line" lang="plaintext"> likelihood evaluation and partitioned analysis by assigning different</span>
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<pre style="margin: 0;">+<span id="LC52" class="line" lang="plaintext"> substitution models to each partition of the MSA. PLL fully implements</span>
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<pre style="margin: 0;">+<span id="LC53" class="line" lang="plaintext"> the GTR nucleotide substitution model for DNA data and a number of</span>
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<pre style="margin: 0;">+<span id="LC54" class="line" lang="plaintext"> models for aminoacid data.</span>
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<pre style="margin: 0;">+<span id="LC55" class="line" lang="plaintext"> .</span>
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<pre style="margin: 0;">+<span id="LC56" class="line" lang="plaintext"> libpll-2 is the new official fork of libpll. It implements site repeats</span>
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<pre style="margin: 0;">+<span id="LC57" class="line" lang="plaintext"> to speed up computations.</span>
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<pre style="margin: 0;">+<span id="LC58" class="line" lang="plaintext"> .</span>
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<pre style="margin: 0;">+<span id="LC59" class="line" lang="plaintext"> This package contains the static library and the header files.</span></pre>
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