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<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/med-team/diamond-aligner">Debian Med / diamond-aligner</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/diamond-aligner/-/commit/3fbfc6ebf31d896d38c47dcf897ad6c5531b64f1">3fbfc6eb</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-06-20T15:44:19+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: New upstream version
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/diamond-aligner/-/commit/72555af9dc6f73fddfb32f6da45a609b0a306bb8">72555af9</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-06-20T15:44:20+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 0.9.35</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/diamond-aligner/-/commit/6c49df56da988639654e3d23fca1ad84b05077a9">6c49df56</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-06-20T15:44:23+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Update upstream source from tag 'upstream/0.9.35'
Update to upstream version '0.9.35'
with Debian dir 69df4cb937d9a39a384d5c0833781a3a61019ddb</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/diamond-aligner/-/commit/956d72c96a7d695c410ff593eb8efc88e74c450e">956d72c9</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-06-20T15:49:22+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: Ready to upload to unstable
</pre>
</li>
</ul>
<h4>30 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#dea01dd89a3b602828e630677fde5d77c06441c8">
.travis.yml
</a>
</li>
<li class="file-stats">
<a href="#9a2aa4db38d3115ed60da621e012c0efc0172aae">
CMakeLists.txt
</a>
</li>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
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</li>
<li class="file-stats">
<a href="#ba308c53c268704c3008f5e2e6e8129f9f6bf3fe">
src/ChangeLog
</a>
</li>
<li class="file-stats">
<a href="#f76380e3e66f9453de89e5ac198478544cf1e6e4">
src/align/align.cpp
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</li>
<li class="file-stats">
<a href="#f1fae2471d3aa9a609a9966be5b7ab4c0f58fa75">
src/align/align.h
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</li>
<li class="file-stats">
<a href="#5a2381540b8362260dcaa6747086bb358097256e">
src/align/extend.cpp
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<li class="file-stats">
<a href="#52ecbb45dea21619756b1951b32ef00fa81a1d54">
src/align/extend.h
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</li>
<li class="file-stats">
<a href="#98a808eabbbc11da533eb019b5faf5950c4104ba">
src/align/gapped.cpp
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</li>
<li class="file-stats">
<a href="#b18faac0ee01a4af7eb1b183c49e78e698af5c15">
src/align/gapped_filter.cpp
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</li>
<li class="file-stats">
<a href="#79b081d050ff058cc4444df01970041d95b03792">
src/align/legacy/query_mapper.cpp
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</li>
<li class="file-stats">
<a href="#28524a0ac5e69e8f46d523d7d08fb7bec288edf3">
src/align/legacy/query_mapper.h
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</li>
<li class="file-stats">
<a href="#6e90476fc6afcc262b4f7dd431ee3fe46d56f2d9">
src/align/legacy/swipe_pipeline.cpp
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<li class="file-stats">
<a href="#6d09ff6bcfac65c792218c53e21ca1a9e62a26ba">
src/align/target.h
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<li class="file-stats">
<a href="#f8990446cab751baed0b8c7fc38171e7d68cb1f7">
src/align/ungapped.cpp
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<li class="file-stats">
<a href="#76d5a97c09cca591280144de40f9c04a5ec57ef7">
src/basic/basic.cpp
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</li>
<li class="file-stats">
<a href="#fe8c534c15ea9cf93547993244c3ab903c4895ff">
src/basic/config.cpp
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</li>
<li class="file-stats">
<a href="#79a175a8b141cc4f06683108fcd39b79a555f1cd">
src/basic/config.h
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</li>
<li class="file-stats">
<a href="#da280a51d91809345347036c4e31920b2c744ab7">
src/basic/const.h
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</li>
<li class="file-stats">
<a href="#e64142605ff8612313a434ebbb47a669146a4d86">
src/basic/masking.h
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</li>
<li class="file-stats">
<a href="#f9492756ecc3a6486c8d8a74972ab3c60ae604a2">
src/basic/match.h
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</li>
<li class="file-stats">
<a href="#0ede537afea69d82dc188cfda9284c8a6625754f">
src/basic/packed_loc.h
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</li>
<li class="file-stats">
<a href="#197fc5f508fe7114a8d6969239ca21465d4ed6d3">
src/basic/parameters.h
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</li>
<li class="file-stats">
<a href="#c37d770cc180a4c51d177941b1090e906642b4fe">
src/basic/score_matrix.cpp
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</li>
<li class="file-stats">
<a href="#15796a835f775e458ca2e977883e5a15f7eb14ae">
src/basic/score_matrix.h
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</li>
<li class="file-stats">
<a href="#5a9aabe1774d75de974ec02b8244fcaff36ab19c">
src/basic/seed.h
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</li>
<li class="file-stats">
<a href="#02748963ebfdb263f232fa8cc7afc742d6771e86">
src/basic/statistics.h
</a>
</li>
<li class="file-stats">
<a href="#819fd68aeb8b724e4ef44ffab4f5609cf4e86b19">
src/basic/value.cpp
</a>
</li>
<li class="file-stats">
<a href="#8a5f881f4845d400ba2859f82f929e365c1a4601">
src/basic/value.h
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</li>
<li class="file-stats">
<a href="#467665467b2524c5963653aca7f29e3762bcc4af">
<span class="new-file">
+
src/cluster/cluster.h
</span>
</a>
</li>
</ul>
<h5>The diff was not included because it is too large.</h5>
</div>
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