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<h3>
Shayan Doust pushed to branch master
at <a href="https://salsa.debian.org/med-team/mindthegap">Debian Med / mindthegap</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/mindthegap/-/commit/84b0bcd5f52ffd2d4ba78712578ead188a457728">84b0bcd5</a></strong>
<div>
<span>by Shayan Doust</span>
<i>at 2020-06-21T17:01:10+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 2.2.2</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/mindthegap/-/commit/8d91b0c78295095ab94121978e603c0730c9e40c">8d91b0c7</a></strong>
<div>
<span>by Shayan Doust</span>
<i>at 2020-06-21T17:01:14+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Update upstream source from tag 'upstream/2.2.2'
Update to upstream version '2.2.2'
with Debian dir ed1fb9185e121485e53257dd8febeda9472b67e4</pre>
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<h4>30 changed files:</h4>
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<li class="file-stats">
<a href="#a5cc2925ca8258af241be7e5b0381edf30266302">
.gitignore
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<li class="file-stats">
<a href="#ab09011fa121d0a2bb9fa4ca76094f2482b902b7">
CHANGELOG.md
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<li class="file-stats">
<a href="#9a2aa4db38d3115ed60da621e012c0efc0172aae">
CMakeLists.txt
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<li class="file-stats">
<a href="#8ec9a00bfd09b3190ac6b22251dbb1aa95a0579d">
README.md
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<li class="file-stats">
<a href="#97a3fc51db7484f62ba70abfc8044f8a786f9b36">
<span class="new-file">
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container/Dockerfile
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<li class="file-stats">
<a href="#f1c5eed3372325868b5d193e30203c0c80b172f7">
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container/MTG_recipes
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<a href="#0ed658c375aacb6d8e8e72665e1dfc560e68f55f">
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container/README.txt
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<a href="#ce0422ce6495be2bc09d9a58a1296b02ebfdfd5a">
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data/regions.bed
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<li class="file-stats">
<a href="#9d14974dbe2a34e8a5fe65458c0fdaaee7c0f38b">
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doc/MindTheGap_assembly.md
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<li class="file-stats">
<a href="#1dd61bb768b613b358467981e3d64ec6394b090d">
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doc/MindTheGap_insertion_caller.md
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<li class="file-stats">
<a href="#929027acba02a405bbe5aba0942d46f122f9d09f">
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scripts/python3/Context_genome_WG.py
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<a href="#06f60af7f24f4d952f884ba3cfa3ad93acb2daa1">
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scripts/python3/Inser_snp_in_ref.py
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<a href="#8a591653ae67af9d98173e4eda3a6dc0ef3e1b73">
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scripts/python3/README.txt
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scripts/script_human_analysis/Context_genome_WG.py
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<a href="#cee6541e92d8c385fe1ac552cbb559b6285961d0">
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scripts/script_human_analysis/Inser_snp_in_ref.py
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<a href="#b80d8420ad1dd21dd1d77b743c75436e00608e81">
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scripts/script_human_analysis/README.txt
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<li class="file-stats">
<a href="#7f7a0041ff10b6a1b389bc8e6e64b5aecd748879">
src/CircularBuffer.hpp
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<li class="file-stats">
<a href="#adece0878a8a457c3376d5aaf5b9a31d65f26181">
src/Filler.cpp
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<li class="file-stats">
<a href="#7dee9a67d61921d9c899a1345a2272b965b1fde4">
src/Filler.hpp
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<li class="file-stats">
<a href="#742edb99d80b28555748f681b2192004565cd699">
src/FindBreakpoints.hpp
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<a href="#29b2c0bba706dabdd7e216e658cae5ac395d73d6">
src/FindHeteroInsertion.hpp
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<li class="file-stats">
<a href="#f25f4390ab84fbf9680e0269f1e6f9608f4686db">
src/FindInsertion.hpp
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<a href="#2cd4f140a733f1b4b5ba60b13303261892bf93aa">
src/FindSNP.hpp
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<a href="#5d1c61938574d188b12119e87936ce22c49407a6">
src/Finder.cpp
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<a href="#5a37c36ef7f6ddb7b647db8e13bf49c965fd7546">
src/Finder.hpp
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<li class="file-stats">
<a href="#8901122a2661584d1f5e8f8cd342b879354d2fd2">
src/GraphAnalysis.cpp
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<li class="file-stats">
<a href="#2b0142ddad234b810ffba0f443f65998baa13f6b">
src/GraphAnalysis.hpp
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<li class="file-stats">
<a href="#bbbb23b5f955819732f5904ddf5a2535e6627a2d">
src/IFindObserver.hpp
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<li class="file-stats">
<a href="#b958235ee8db37bcaceda04b6d55553b450c2db4">
src/main.cpp
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<li class="file-stats">
<a href="#fa9369bafa5a458f2e91ff5e58935084ad811b01">
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src/nwAlign/nwalign.cpp
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<h5>The diff was not included because it is too large.</h5>
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