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<h3>
Aaron M. Ucko pushed to branch master
at <a href="https://salsa.debian.org/med-team/ncbi-entrez-direct">Debian Med / ncbi-entrez-direct</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/ncbi-entrez-direct/-/commit/b2fdbc6f13ef938d684b9693ef5b6b4b01b21576">b2fdbc6f</a></strong>
<div>
<span>by Aaron M. Ucko</span>
<i>at 2020-02-09T15:08:38-05:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 12.1.20190819+ds</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/ncbi-entrez-direct/-/commit/3e3c15d2b420811f8f3870633cce469c275315de">3e3c15d2</a></strong>
<div>
<span>by Aaron M. Ucko</span>
<i>at 2020-02-09T15:10:50-05:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 12.1.20190829+ds</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/ncbi-entrez-direct/-/commit/ec277b424b042fdc0a28bf773380774ddc218978">ec277b42</a></strong>
<div>
<span>by Aaron M. Ucko</span>
<i>at 2020-02-09T16:19:45-05:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 12.2.20190909+ds</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/ncbi-entrez-direct/-/commit/856896054e1d53e752a897134b79bdcbf73ec618">85689605</a></strong>
<div>
<span>by Aaron M. Ucko</span>
<i>at 2020-02-09T17:19:55-05:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 12.2.20191011+ds</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/ncbi-entrez-direct/-/commit/63cee944cb3be2038988cb652c31d8d6e1b61b90">63cee944</a></strong>
<div>
<span>by Aaron M. Ucko</span>
<i>at 2020-03-22T15:53:19-04:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 12.3.20191015+ds</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/ncbi-entrez-direct/-/commit/d621f5b6a7ac4449fb8891383da5eb289c7f10d5">d621f5b6</a></strong>
<div>
<span>by Aaron M. Ucko</span>
<i>at 2020-03-22T16:29:27-04:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 12.3.20191024+ds</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/ncbi-entrez-direct/-/commit/a312eefb2ebf8cd53bc1fc6df031d5f932744bca">a312eefb</a></strong>
<div>
<span>by Aaron M. Ucko</span>
<i>at 2020-04-27T19:49:53-04:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 12.4.20191028+ds</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/ncbi-entrez-direct/-/commit/9278fc9cee26f72d7a9ccec6e32d6595d2703d93">9278fc9c</a></strong>
<div>
<span>by Aaron M. Ucko</span>
<i>at 2020-04-27T20:02:40-04:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 12.4.20191105+ds</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/ncbi-entrez-direct/-/commit/9465701b534eeab9f0b5401e3466d60b1a360f81">9465701b</a></strong>
<div>
<span>by Aaron M. Ucko</span>
<i>at 2020-04-27T20:29:55-04:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 12.5.20191106+ds</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/ncbi-entrez-direct/-/commit/0091def142acfe624399359e6ec61446d223b453">0091def1</a></strong>
<div>
<span>by Aaron M. Ucko</span>
<i>at 2020-05-07T09:58:33-04:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Merge tag 'upstream/12.1.20190819+ds'
Upstream version 12.1.20190819(+ds).
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/ncbi-entrez-direct/-/commit/ccfdc8238cfa2a66ac383cbf8f843d0b54c2279c">ccfdc823</a></strong>
<div>
<span>by Aaron M. Ucko</span>
<i>at 2020-05-07T09:58:33-04:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Belated manpage fixes following 12.0.20190816+ds-1 upload.
* efetch.1: Correct old paste-o in -chr_stop's description.
* fetch-pubmed.1: Wordsmith description of -path.
* nquire.1: Drop accidental self-referential SEE ALSO.
* xtract.1: Belatedly resync -indices' description.
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/ncbi-entrez-direct/-/commit/26a1c7aac8b070356af96b09589d123cf42f0776">26a1c7aa</a></strong>
<div>
<span>by Aaron M. Ucko</span>
<i>at 2020-05-07T09:58:33-04:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Merge tag 'upstream/12.1.20190829+ds'
Upstream version 12.1.20190829(+ds).
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/ncbi-entrez-direct/-/commit/c5a4dc297ebf180b5ab7bd8089101ecc7c47c6a0">c5a4dc29</a></strong>
<div>
<span>by Aaron M. Ucko</span>
<i>at 2020-05-07T09:58:33-04:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">d/rules (AS_IS_SCRIPTS): +expand-current, index-bioc -> index-extras
Account for new as-is script expand-current and for rename of as-is
script index-bioc to index-extras.
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/ncbi-entrez-direct/-/commit/2b6d3822d1fe57ed57e4fe9bdd8e563539aefa7a">2b6d3822</a></strong>
<div>
<span>by Aaron M. Ucko</span>
<i>at 2020-05-07T09:58:33-04:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">debian/man: Update for new release (12.1.20190829[+ds]).
* download-ncbi-data.1: Document new (-)generif, (-)oa-list,
and (-)oa-book flags.
* expand-current.1: Document new command.
* index-extras.1: Rename from index-bioc.1; document additional
GeneRifs coverage.
* Update SEE ALSO references as appropriate.
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/ncbi-entrez-direct/-/commit/6abffec9c7617935be9763663f1893666826284f">6abffec9</a></strong>
<div>
<span>by Aaron M. Ucko</span>
<i>at 2020-05-07T09:58:33-04:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Merge tag 'upstream/12.2.20190909+ds'
Upstream version 12.2.20190909+ds
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/ncbi-entrez-direct/-/commit/4b9518eda7160d6c45f2edfadaff7f47ec5f80ab">4b9518ed</a></strong>
<div>
<span>by Aaron M. Ucko</span>
<i>at 2020-05-07T09:58:33-04:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">debian/rules: Account for new mistagged bash script index-themes.
To that end, add a new generic mechanism akin to the one used for Perl
scripts.
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/ncbi-entrez-direct/-/commit/0082086d023331db399f310405d4ff897749a567">0082086d</a></strong>
<div>
<span>by Aaron M. Ucko</span>
<i>at 2020-05-07T09:58:33-04:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">debian/control: Suggest curl (for index-themes).
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/ncbi-entrez-direct/-/commit/20c392a49fd30cf04317e63e6cb98536e5f9d017">20c392a4</a></strong>
<div>
<span>by Aaron M. Ucko</span>
<i>at 2020-05-07T09:58:34-04:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">debian/man: Update for new release (12.2.20190909[+ds]).
* index-themes.1: Document new command.
* Update SEE ALSO references as appropriate.
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/ncbi-entrez-direct/-/commit/3b41ece1963ab71ac3d2a4f793d90e06b3ff0061">3b41ece1</a></strong>
<div>
<span>by Aaron M. Ucko</span>
<i>at 2020-05-07T09:58:34-04:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Merge tag 'upstream/12.2.20191011+ds'
Upstream version 12.2.20191011+ds
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/ncbi-entrez-direct/-/commit/0a0cebb7ef944120c6baf49d1eba62c18b371c18">0a0cebb7</a></strong>
<div>
<span>by Aaron M. Ucko</span>
<i>at 2020-05-07T09:58:34-04:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">d/rules: +fetch-extras (as-is); index-extras subsumes index-themes.
List the merged index-extras in BASH_SCRIPTS rather than AS_IS_SCRIPTS
because it has the same unflagged bashism as index-themes did.
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/ncbi-entrez-direct/-/commit/1bb46bb09c6c765dff82e611135d3d893ea3199d">1bb46bb0</a></strong>
<div>
<span>by Aaron M. Ucko</span>
<i>at 2020-05-07T09:58:34-04:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">debian/man: Update for new release (12.2.20191011[+ds]).
* download-ncbi-data.1: Note expansion of (-)bioconcepts
and (-)generif actions.
* fetch-extras.1: Document new command.
* index-extras.1: Document incorporation of index-themes.
* index-themes.1: Retire.
* phrase-search.1: Mode now mandatory; -search gone; -terms added;
-query moved up per -help.
* xtract.1: New flags -is-{before,after} (String Constraints), -mul,
-div, -mod (Numeric Processing), -chain (String Processing),
-sort (new Record Rearrangement section), and -t2x (Data Conversion).
* Update SEE ALSO accordingly.
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/ncbi-entrez-direct/-/commit/8f6014e405ed4d2f29b32bcc7d4ae161763849bf">8f6014e4</a></strong>
<div>
<span>by Aaron M. Ucko</span>
<i>at 2020-05-07T09:58:34-04:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Merge tag 'upstream/12.3.20191015+ds'
Upstream version 12.3.20191015(+ds).
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/ncbi-entrez-direct/-/commit/d6e9bb1d4bb6c5165e6ef121efd6bc194886572a">d6e9bb1d</a></strong>
<div>
<span>by Aaron M. Ucko</span>
<i>at 2020-05-07T09:58:34-04:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">xtract.1: Explicitly mark -format's and -j2x's suboptions as such.
Prepare for giving the same treatment to -t2x, which now takes suboptions
(partially overlapping with -j2x's) ahead of positional arguments.
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/ncbi-entrez-direct/-/commit/1e6b950ecf47e0e9e81d451c9d39655224ebcc9c">1e6b950e</a></strong>
<div>
<span>by Aaron M. Ucko</span>
<i>at 2020-05-07T09:58:34-04:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">debian/man: Update for new release (12.3.20191015[+ds]).
* nquire.1: Note that -get now takes an optional immediate URL (with
no need to add -url explicitly).
* xtract.1: Note new -t2x usage, with set and record wrappers now
coming in via -set and -rec suboptions as with -j2x, and joined
by a new -skip suboption.
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/ncbi-entrez-direct/-/commit/cccbd8f1266d7c741cac1ea92e438d015e64a5e6">cccbd8f1</a></strong>
<div>
<span>by Aaron M. Ucko</span>
<i>at 2020-05-07T09:58:34-04:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Merge tag 'upstream/12.3.20191024+ds'
Upstream version 12.3.20191024(+ds).
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/ncbi-entrez-direct/-/commit/54434f7efd6c0adef732d9c90c17442d4935ea37">54434f7e</a></strong>
<div>
<span>by Aaron M. Ucko</span>
<i>at 2020-05-07T09:59:59-04:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Install Scripps BioThings support (bt-*, xplore) as non-examples.
* debian/examples: Remove Scripps BioThings support, now considered official
enough (mentioned in README, albeit as experimental).
* debian/install: Install bt-*.txt (bt-context.txt at present) to a new
/usr/share/ncbi-entrez-direct directory.
* debian/rules: Account for newly official Scripps BioThings scripts bt-link,
bt-load, bt-save, bt-srch, and xplore (some of which need tweaking to look
for bt-context.txt in the right place).
Man pages to follow, as part of this release's general roundup.
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/ncbi-entrez-direct/-/commit/17d49dd03774e839e171c6a4c81c37f29b302283">17d49dd0</a></strong>
<div>
<span>by Aaron M. Ucko</span>
<i>at 2020-05-07T10:00:04-04:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">debian/man: Update for new release (12.3.20191024[+ds]).
* bt-{link,load,save-search}.1, xtract.1: Document new commands.
* {edirect,ftp-cp,ftp-ls,nquire,transmute}.1: Note consolidation of
ftp-cp, ftp-ls, nquire, and transmute into edirect.
* elink.1: Add PubMed Citation Lookup (-cited and -cites).
* xtract.1: Note new -t2x suboptions -lower, -upper, and -indent;
tweak -t2x suboption formatting.
* Update SEE ALSO links accordingly.
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/ncbi-entrez-direct/-/commit/fc9ceedbc5b9d6aaa41734a738fc2e56fe0128ba">fc9ceedb</a></strong>
<div>
<span>by Aaron M. Ucko</span>
<i>at 2020-05-07T10:00:05-04:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Merge tag 'upstream/12.4.20191028+ds'
Upstream version 12.4.20191028(+ds).
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/ncbi-entrez-direct/-/commit/45439b4413c93bf8bc4f4e90ac2da6a0948e1245">45439b44</a></strong>
<div>
<span>by Aaron M. Ucko</span>
<i>at 2020-05-07T10:00:05-04:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">phrase-search.1: Document new -filter option (12.4.20191028[+ds]).
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/ncbi-entrez-direct/-/commit/e72987185b5eb860ef529927cd2e0143d7b39352">e7298718</a></strong>
<div>
<span>by Aaron M. Ucko</span>
<i>at 2020-05-07T10:00:05-04:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Merge tag 'upstream/12.4.20191105+ds'
Upstream version 12.4.20191105(+ds).
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/ncbi-entrez-direct/-/commit/650386ec143d746027fd51acd1696e3c51f26b93">650386ec</a></strong>
<div>
<span>by Aaron M. Ucko</span>
<i>at 2020-05-07T10:00:05-04:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">debian/man: Update for new release (12.4.20191105[+ds]).
* efetch.1: Add -revcomp; clarify -strand (both under Sequence Range).
* xtract.1: Add -flush in opposition to -indent for -t2x (Data Conversion).
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/ncbi-entrez-direct/-/commit/6141f5c861c3bc73b2b4a22aeca38abcded58303">6141f5c8</a></strong>
<div>
<span>by Aaron M. Ucko</span>
<i>at 2020-05-07T10:00:05-04:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Merge tag 'upstream/12.5.20191106+ds'
Upstream version 12.5.20191106(+ds).
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/ncbi-entrez-direct/-/commit/67fc1222df994632acb5bed7bca0a2d204ac6017">67fc1222</a></strong>
<div>
<span>by Aaron M. Ucko</span>
<i>at 2020-05-07T10:00:05-04:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">efetch.1: + Subset Retrieval (-start/-stop) for 12.5.20191106[+ds].
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/ncbi-entrez-direct/-/commit/f9809abbb2f76052fcddef7f97cec98b1a2070cb">f9809abb</a></strong>
<div>
<span>by Aaron M. Ucko</span>
<i>at 2020-06-21T20:59:58-04:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Prepare to exclude sourceless PDF documents.
* debian/copyright: Add *.pdf (sourceless) to Files-Excluded.
* debian/watch: Change repack suffix to +dfsg due to the additional need
to exclude sourceless PDF documents.
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/ncbi-entrez-direct/-/commit/c049950900bc4592a2f635135105279ff8638faf">c0499509</a></strong>
<div>
<span>by Aaron M. Ucko</span>
<i>at 2020-06-21T21:22:08-04:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 12.5.20191115+dfsg</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/ncbi-entrez-direct/-/commit/ef43537b02b964858501f847798868b18194a9a6">ef43537b</a></strong>
<div>
<span>by Aaron M. Ucko</span>
<i>at 2020-06-21T21:24:01-04:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Merge tag 'upstream/12.5.20191115+dfsg'
Upstream version 12.5.20191115(+dfsg).
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/ncbi-entrez-direct/-/commit/574a8cb306b6071a840e8867a8d2362613915e52">574a8cb3</a></strong>
<div>
<span>by Aaron M. Ucko</span>
<i>at 2020-06-21T21:26:36-04:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">debian/rules: Account for new Go executable t2x.
Man page to follow as part of a general roundup, as usual.
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/ncbi-entrez-direct/-/commit/b495131a7e569fe1673161c1086c9bd3da242d26">b495131a</a></strong>
<div>
<span>by Aaron M. Ucko</span>
<i>at 2020-06-21T21:28:23-04:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 12.6.20191115+dfsg</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/ncbi-entrez-direct/-/commit/08ac1e5a2e139347ec5100a2ee476071b962b6e6">08ac1e5a</a></strong>
<div>
<span>by Aaron M. Ucko</span>
<i>at 2020-06-21T21:31:10-04:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">debian/man: Update for new release (12.5.20191115[+dfsg]).
* t2x.1: Document new command.
* transmute.1: Reflect radical change in -help coverage.
* Update SEE ALSO sections accordingly.
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/ncbi-entrez-direct/-/commit/97687271075bd81910ee0e141aafddaabf23a435">97687271</a></strong>
<div>
<span>by Aaron M. Ucko</span>
<i>at 2020-06-21T21:31:15-04:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Merge tag 'upstream/12.6.20191115+dfsg'
Upstream version 12.6.20191115(+dfsg).
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/ncbi-entrez-direct/-/commit/b647e6d0fe4462801197ff09fbf58c8434290192">b647e6d0</a></strong>
<div>
<span>by Aaron M. Ucko</span>
<i>at 2020-06-21T21:32:15-04:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 12.6.20191120+dfsg</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/ncbi-entrez-direct/-/commit/43c1b3ec5f9b8c2e0cdea33f1e07c9f5a7c00605">43c1b3ec</a></strong>
<div>
<span>by Aaron M. Ucko</span>
<i>at 2020-06-21T21:33:20-04:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Merge tag 'upstream/12.6.20191120+dfsg'
Upstream version 12.6.20191120(+dfsg).
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/ncbi-entrez-direct/-/commit/eadb6ca830f7df0b7b7bb4ea09d9902a1049704f">eadb6ca8</a></strong>
<div>
<span>by Aaron M. Ucko</span>
<i>at 2020-06-21T21:34:15-04:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 12.7.20191121+dfsg</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/ncbi-entrez-direct/-/commit/d7d9a8792d0bb63361a0731343e1ebb4eef4fa84">d7d9a879</a></strong>
<div>
<span>by Aaron M. Ucko</span>
<i>at 2020-06-21T21:35:06-04:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Merge tag 'upstream/12.7.20191121+dfsg'
Upstream version 12.7.20191121(+dfsg).
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/ncbi-entrez-direct/-/commit/25bcd42990d0d46722617eb02f6e043ba2cf7202">25bcd429</a></strong>
<div>
<span>by Aaron M. Ucko</span>
<i>at 2020-06-21T21:36:15-04:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 12.7.20191128+dfsg</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/ncbi-entrez-direct/-/commit/f6d88b18b6efbef968b6524312c65d7c1df58224">f6d88b18</a></strong>
<div>
<span>by Aaron M. Ucko</span>
<i>at 2020-06-21T21:36:30-04:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Merge tag 'upstream/12.7.20191128+dfsg'
Upstream version 12.7.20191128(+dfsg).
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/ncbi-entrez-direct/-/commit/ba88aee180c962decfce6f534dc85f652ff3aab1">ba88aee1</a></strong>
<div>
<span>by Aaron M. Ucko</span>
<i>at 2020-06-21T21:37:23-04:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">xtract.1: + -molwt (Sequence Processing), as of 12.7.20191128(+dfsg).
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/ncbi-entrez-direct/-/commit/dd510e977e3a0ddd894ef3adadf2364e43adba2c">dd510e97</a></strong>
<div>
<span>by Aaron M. Ucko</span>
<i>at 2020-06-21T21:38:31-04:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 12.8.20191202+dfsg</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/ncbi-entrez-direct/-/commit/75c4a3590aab962fd467a074d3d96cae85acc3ec">75c4a359</a></strong>
<div>
<span>by Aaron M. Ucko</span>
<i>at 2020-06-21T21:39:06-04:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Merge tag 'upstream/12.8.20191202+dfsg'
Upstream version 12.8.20191202(+dfsg).
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/ncbi-entrez-direct/-/commit/a6ceb93ede773020745cf6cdf369d833ea69b4db">a6ceb93e</a></strong>
<div>
<span>by Aaron M. Ucko</span>
<i>at 2020-06-21T21:39:43-04:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">debian/man: Update for new release (12.8.20191202[+dfsg]).
* esample.1: New -docsum mode.
* xtract.1: -synopsis (Summary) now takes optional arguments (-leaf
and/or a delimiter).
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/ncbi-entrez-direct/-/commit/e3f684915607c1eade73556e1854c03143a2e778">e3f68491</a></strong>
<div>
<span>by Aaron M. Ucko</span>
<i>at 2020-06-21T21:40:32-04:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 12.8.20191206+dfsg</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/ncbi-entrez-direct/-/commit/ad47134d33bd6dc19a237481200d51983690638a">ad47134d</a></strong>
<div>
<span>by Aaron M. Ucko</span>
<i>at 2020-06-21T21:40:47-04:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Merge tag 'upstream/12.8.20191206+dfsg'
Upstream version 12.8.20191206(+dfsg).
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/ncbi-entrez-direct/-/commit/e1d2e2522afe445d0d07a3e07fe5dc8ea972ce12">e1d2e252</a></strong>
<div>
<span>by Aaron M. Ucko</span>
<i>at 2020-06-21T21:42:13-04:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Tweak installation structure so xtract can find hlp-xtract.txt.
* Generally change /usr/share/ncbi-entrez-direct to /usr/lib/n-e-d.
* debian/install: Install hlp-*.txt (hlp-xtract.txt) there too.
* debian/rules:
- Adjust corresponding macro name from SHARE_DIR to LIB_DIR accordingly.
- Move the xtract binary there from /usr/bin (so it can find
hlp-xtract.txt) and substitute a wrapper script.
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/ncbi-entrez-direct/-/commit/48724785c33a8a6a6b7caf188e8fdb86816bcebf">48724785</a></strong>
<div>
<span>by Aaron M. Ucko</span>
<i>at 2020-06-21T21:42:35-04:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">debian/man: Update for new release (12.8.20191206[+dfsg]).
* index-pubmed.1: Add new (mutually exclusive) options -collect,
-index, -invert, -merge, and -promote.
* xtract.1: Rename -in to -using; add -adding and -merging (all under
Record Selection).
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/ncbi-entrez-direct/-/commit/3204ceab8a04b8e159ae3953bdefe8dad6d03f1b">3204ceab</a></strong>
<div>
<span>by Aaron M. Ucko</span>
<i>at 2020-06-21T21:44:01-04:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 12.9.20191209+dfsg</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/ncbi-entrez-direct/-/commit/8031da8398beff61a77feb8abb3a6ff0c1016ff8">8031da83</a></strong>
<div>
<span>by Aaron M. Ucko</span>
<i>at 2020-06-21T21:44:51-04:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Merge tag 'upstream/12.9.20191209+dfsg'
Upstream version 12.9.20191209(+dfsg).
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/ncbi-entrez-direct/-/commit/b940c29875dcff9b443b655d24cfc5ecc52a3a95">b940c298</a></strong>
<div>
<span>by Aaron M. Ucko</span>
<i>at 2020-06-21T21:45:29-04:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 12.9.20191213+dfsg</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/ncbi-entrez-direct/-/commit/82e9dd7edb062c603661e3c182b3ea18a974b6b0">82e9dd7e</a></strong>
<div>
<span>by Aaron M. Ucko</span>
<i>at 2020-06-21T21:45:44-04:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Merge tag 'upstream/12.9.20191213+dfsg'
Upstream version 12.9.20191213(+dfsg).
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/ncbi-entrez-direct/-/commit/0dae7ccd233302de255baa62c60a213a06d4d08a">0dae7ccd</a></strong>
<div>
<span>by Aaron M. Ucko</span>
<i>at 2020-06-21T21:46:13-04:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">xtract.1: + -fwd/-awd (Format C11n) as of 12.9.20191213(+dfsg).
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/ncbi-entrez-direct/-/commit/2789ed8d0f6e73551efb8888fae244ade383b054">2789ed8d</a></strong>
<div>
<span>by Aaron M. Ucko</span>
<i>at 2020-06-21T21:47:53-04:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 13.0.20191216+dfsg</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/ncbi-entrez-direct/-/commit/8ded343ede37666d6aec09be3edd99180c764a48">8ded343e</a></strong>
<div>
<span>by Aaron M. Ucko</span>
<i>at 2020-06-21T21:48:21-04:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Merge tag 'upstream/13.0.20191216+dfsg'
Upstream version 13.0.20191216(+dfsg).
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/ncbi-entrez-direct/-/commit/bb5309beb7923d3459170752a490bac4f6c42186">bb5309be</a></strong>
<div>
<span>by Aaron M. Ucko</span>
<i>at 2020-06-21T21:49:03-04:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">debian/man: Update for new release (13.0.20191216[+dfsg]).
* xtract.1: Add new sections XML Generation (existing -wrp, -plg,
-elg, -fwd, and -awd) between Format Customization and Element
Selection; and Frequency Table (new -histogram) and Entrez
Indexing (existing -e2index and -indices) between Command Generator
and Miscellaneous.
* Update SEE ALSO sections appropriately.
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/ncbi-entrez-direct/-/commit/4a689f4c0c5ab087f38b02b0301aacf4a737caea">4a689f4c</a></strong>
<div>
<span>by Aaron M. Ucko</span>
<i>at 2020-06-21T21:50:21-04:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">rules: Broaden .../x/sys/unix to .../x/sys in GOLIBSRC(_) (#963439)
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/ncbi-entrez-direct/-/commit/a45f7aa8182eec6c316615059cb2f26852965ce7">a45f7aa8</a></strong>
<div>
<span>by Aaron M. Ucko</span>
<i>at 2020-06-21T21:51:10-04:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 13.0.20191223+dfsg</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/ncbi-entrez-direct/-/commit/2a6b27533efba5c99f1091b8fadfd9d32892620c">2a6b2753</a></strong>
<div>
<span>by Aaron M. Ucko</span>
<i>at 2020-06-21T21:51:33-04:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Merge tag 'upstream/13.0.20191223+dfsg'
Upstream version 13.0.20191223(+dfsg).
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/ncbi-entrez-direct/-/commit/8b440ba5af22c667eda8f7c5d8855bfabee08f6f">8b440ba5</a></strong>
<div>
<span>by Aaron M. Ucko</span>
<i>at 2020-06-21T21:52:39-04:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 13.1.20200102+dfsg</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/ncbi-entrez-direct/-/commit/a6b47fc969b0a14b63748f103d110695f5240f7e">a6b47fc9</a></strong>
<div>
<span>by Aaron M. Ucko</span>
<i>at 2020-06-21T21:53:13-04:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Merge tag 'upstream/13.1.20200102+dfsg'
Upstream version 13.1.20200102(+dfsg).
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/ncbi-entrez-direct/-/commit/857d6d3ad2383bee7b32835f0ed0a8d9a1337358">857d6d3a</a></strong>
<div>
<span>by Aaron M. Ucko</span>
<i>at 2020-06-21T22:37:08-04:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Temporarily move go.mod, go.sum, and s2p.go aside.
* .gitignore: Ignore new "saved" directory.
* debian/rules: Temporarily move new go.mod, go.sum, and s2p.go files
to a "saved" directory to keep them from interfering with the build
process. (They don't necessarily deserve outright exclusion, even
with repacking already in use.)
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/ncbi-entrez-direct/-/commit/e0d49d993e9299e58db684947a203e26067a947b">e0d49d99</a></strong>
<div>
<span>by Aaron M. Ucko</span>
<i>at 2020-06-21T22:37:08-04:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">xtract.1: Update for new release (13.1.20200102[+dfsg]).
In Record Selection, replace -using/-adding/-merging with
-retaining/-excluding/-appending (where -retaining and -appending are
simply new names for -using and -merging respectively, -adding is
gone, and -excluding is new).
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/ncbi-entrez-direct/-/commit/2448c2ad8ec6b1b23da8cc84ded2874bf696395c">2448c2ad</a></strong>
<div>
<span>by Aaron M. Ucko</span>
<i>at 2020-06-21T22:37:08-04:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Finalize ncbi-entrez-direct 13.1.20200102+dfsg-1 for unstable.
Still several months behind, but precipitated by #963439.
</pre>
</li>
</ul>
<h4>30 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#a5cc2925ca8258af241be7e5b0381edf30266302">
.gitignore
</a>
</li>
<li class="file-stats">
<a href="#69e27356ef629022720d868ab0c0e3394775b6c1">
README
</a>
</li>
<li class="file-stats">
<a href="#5f1b2719eaeaeb49bcc6004c5e3f62c796fca4df">
archive-pubmed
</a>
</li>
<li class="file-stats">
<a href="#88885d31980ad8c32dbb73ac5b38c2c83a3ed475">
asp-ls
</a>
</li>
<li class="file-stats">
<a href="#c5a4dd6ddcc86cb31503fafc67cc034f5ea47cab">
bt-link
</a>
</li>
<li class="file-stats">
<a href="#bc07c5224c450ededa3d43825734a71367dae6ff">
bt-srch
</a>
</li>
<li class="file-stats">
<a href="#59f81c123b3abbcb97274545796dd18706c3e106">
build.sh
</a>
</li>
<li class="file-stats">
<a href="#1588f2dbc1e98ab2c9bf8a54be702ddf2c59a3e5">
common.go
</a>
</li>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
</a>
</li>
<li class="file-stats">
<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
</a>
</li>
<li class="file-stats">
<a href="#adb7f75f79e3bb85eb62912a2904c5d24af878fb">
debian/copyright
</a>
</li>
<li class="file-stats">
<a href="#9a14945e16c9144bd18a7ed182b1f8e4a2b50d7c">
debian/examples
</a>
</li>
<li class="file-stats">
<a href="#68d8c5c6babbf5cf109b2584c454449dbff75772">
debian/install
</a>
</li>
<li class="file-stats">
<a href="#1069409e4adcef3aa1e78aab2e9645ad5ace4c54">
debian/man/archive-pubmed.1
</a>
</li>
<li class="file-stats">
<a href="#403b257c446245d31733478d185351671b2e0939">
<span class="new-file">
+
debian/man/bt-link.1
</span>
</a>
</li>
<li class="file-stats">
<a href="#942ca4169dcf5a0a8ec8c7b7af2e1c5a1e6d99d3">
<span class="new-file">
+
debian/man/bt-load.1
</span>
</a>
</li>
<li class="file-stats">
<a href="#95af2dc41a744a85301bb3ac51bbef646a0d2c65">
<span class="new-file">
+
debian/man/bt-save.1
</span>
</a>
</li>
<li class="file-stats">
<a href="#7d0b610530db4e1bfd376d9728d153b250e21894">
<span class="new-file">
+
debian/man/bt-srch.1
</span>
</a>
</li>
<li class="file-stats">
<a href="#0d0a41c55a60d15f26c5a3fca73b899f3eec7a5b">
debian/man/download-ncbi-data.1
</a>
</li>
<li class="file-stats">
<a href="#eb14d9a63f01ebc183cc3018aac3f0c1f31466c6">
debian/man/edirect.1
</a>
</li>
<li class="file-stats">
<a href="#70c9431e40b6a76de4408359471875da0caa1e6f">
debian/man/efetch.1
</a>
</li>
<li class="file-stats">
<a href="#5d7cbf1438498bd5cbb95095d12c0d883b6b02b2">
debian/man/elink.1
</a>
</li>
<li class="file-stats">
<a href="#afa6e53aacd6ef993cbc1a86b41cfb0eecfca064">
debian/man/esample.1
</a>
</li>
<li class="file-stats">
<a href="#40aa9666c26a1c35f0b79326e8b20308563c0dba">
debian/man/esearch.1
</a>
</li>
<li class="file-stats">
<a href="#3c7188080486ccd9349b952224eada832195e90c">
<span class="new-file">
+
debian/man/expand-current.1
</span>
</a>
</li>
<li class="file-stats">
<a href="#b45b7e879a80e7fe65101caaa1d87a0f5a5951fd">
<span class="new-file">
+
debian/man/fetch-extras.1
</span>
</a>
</li>
<li class="file-stats">
<a href="#8b1a795f7bf1b2bdd24f88c4a298b69b57904a20">
debian/man/fetch-pubmed.1
</a>
</li>
<li class="file-stats">
<a href="#14ae543f05341c7b86a8ac5c40612dccd9171b98">
debian/man/ftp-cp.1
</a>
</li>
<li class="file-stats">
<a href="#8d21a19373a62fcd6e3a1b3b85c0fb316ea1f1cc">
debian/man/ftp-ls.1
</a>
</li>
<li class="file-stats">
<a href="#37b2af46d51c635607072b2837e4b39711207fb8">
debian/man/index-bioc.1
→
debian/man/index-extras.1
</a>
</li>
</ul>
<h5>The diff was not included because it is too large.</h5>
</div>
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