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<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/med-team/community/helper-scripts">Debian Med / community / helper-scripts</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/community/helper-scripts/-/commit/c58ac6e3c87daa3beddb554973d087f84fba261a">c58ac6e3</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-06-23T13:42:55+00:00</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">automatic update
</pre>
</li>
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<h4>2 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#f6d55d24085decec06151dd27f30199089d856ca">
debian-med-tests.txt
</a>
</li>
<li class="file-stats">
<a href="#2654e31016bcee9bbe05d462121706cc8ed368af">
outdated_med-packages.txt
</a>
</li>
</ul>
<h4>Changes:</h4>
<li id="f6d55d24085decec06151dd27f30199089d856ca">
<a href="https://salsa.debian.org/med-team/community/helper-scripts/-/commit/c58ac6e3c87daa3beddb554973d087f84fba261a#f6d55d24085decec06151dd27f30199089d856ca"><strong>debian-med-tests.txt</strong></a>
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="plaintext">Last-Update: Tue, 23 Jun 2020 <span class="idiff left right">01:42:03</span> +0000</span>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">Last-Update: Tue, 23 Jun 2020 <span class="idiff left right">13:42:04</span> +0000</span>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext"> Source | Vote | Tasks | Tags </span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext">-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------</span>
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<pre style="margin: 0;">-<span id="LC5" class="line" lang="plaintext"> dcmtk | 18<span class="idiff left right">4</span> | {imaging,covid-19} | </span>
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<pre style="margin: 0;">-<span id="LC6" class="line" lang="plaintext"> orthanc | 9<span class="idiff left right">3</span> | {imaging,covid-19,practice} | </span>
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<pre style="margin: 0;">-<span id="LC7" class="line" lang="plaintext"> gdcm | 4<span class="idiff left right">5</span> | {imaging-dev} | </span>
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<pre style="margin: 0;">-<span id="LC8" class="line" lang="plaintext"> orthanc-wsi | 4<span class="idiff left right">1</span> | {practice,laboratory,covid-19,oncology,his,imaging} | </span>
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<pre style="margin: 0;">-<span id="LC9" class="line" lang="plaintext"> htsjdk | 3<span class="idiff left right">2</span> | {bio-dev} | </span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext"> dcmtk | 18<span class="idiff left right">2</span> | {imaging,covid-19} | </span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext"> orthanc | 9<span class="idiff left right">2</span> | {imaging,covid-19,practice} | </span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext"> gdcm | 4<span class="idiff left right">6</span> | {imaging-dev} | </span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext"> orthanc-wsi | 4<span class="idiff left right">0</span> | {practice,laboratory,covid-19,oncology,his,imaging} | </span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="plaintext"> htsjdk | 3<span class="idiff left right">3</span> | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="plaintext"> dcm2niix | 25 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="plaintext"> dicomscope | 25 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC12" class="line" lang="plaintext"> dicom3tools | 24 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC13" class="line" lang="plaintext"> gdcm | 21 | {covid-19,imaging} | </span>
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<pre style="margin: 0;"> <span id="LC14" class="line" lang="plaintext"> ngs-sdk | 19 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC15" class="line" lang="plaintext"> gnumed-server | 17 | {practice,covid-19} | </span>
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<pre style="margin: 0;">-<span id="LC16" class="line" lang="plaintext"> gdcm | 12 | {imaging-dev} | </span>
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<pre style="margin: 0;">-<span id="LC17" class="line" lang="plaintext"> insighttoolkit4 | 12 | {imaging-dev} | </span>
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="plaintext"> gdcm | 13 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC17" class="line" lang="plaintext"> invesalius | 12 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC18" class="line" lang="plaintext"> minc-tools | 12 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC19" class="line" lang="plaintext"> adun.app | 11 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC20" class="line" lang="plaintext"> insighttoolkit4 | 11 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC21" class="line" lang="plaintext"> jebl2 | 10 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC22" class="line" lang="plaintext"> pixelmed | 10 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC23" class="line" lang="plaintext"> plastimatch | 10 | {imaging} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -32,12 +32,12 @@ Last-Update: Tue, 23 Jun 2020 01:42:03 +0000</td>
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<pre style="margin: 0;"> <span id="LC32" class="line" lang="plaintext"> ngs-sdk | 8 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC33" class="line" lang="plaintext"> obitools | 8 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC34" class="line" lang="plaintext"> openslide | 8 | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC35" class="line" lang="plaintext"> stacks | 8 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC36" class="line" lang="plaintext"> fastlink | 7 | {bio,cloud} | </span>
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<pre style="margin: 0;"> <span id="LC37" class="line" lang="plaintext"> king-probe | 7 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC38" class="line" lang="plaintext"> ncbi-seg | 7 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC39" class="line" lang="plaintext"> orthanc-webviewer | 7 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC40" class="line" lang="plaintext"> seqsero | 7 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC40" class="line" lang="plaintext"> stacks | 7 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC41" class="line" lang="plaintext"> biojava-live | 6 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC42" class="line" lang="plaintext"> biomaj3-cli | 6 | {cloud} | </span>
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<pre style="margin: 0;"> <span id="LC43" class="line" lang="plaintext"> ea-utils | 6 | {bio} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -53,6 +53,7 @@ Last-Update: Tue, 23 Jun 2020 01:42:03 +0000</td>
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<pre style="margin: 0;"> <span id="LC53" class="line" lang="plaintext"> brig | 5 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC54" class="line" lang="plaintext"> ecopcr | 5 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC55" class="line" lang="plaintext"> jaligner | 5 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC56" class="line" lang="plaintext"> lagan | 5 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC57" class="line" lang="plaintext"> libminc | 5 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC58" class="line" lang="plaintext"> maqview | 5 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC59" class="line" lang="plaintext"> microbegps | 5 | {bio} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -88,7 +89,6 @@ Last-Update: Tue, 23 Jun 2020 01:42:03 +0000</td>
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<pre style="margin: 0;"> <span id="LC89" class="line" lang="plaintext"> hinge | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC90" class="line" lang="plaintext"> ipig | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC91" class="line" lang="plaintext"> jellyfish1 | 4 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC91" class="line" lang="plaintext"> lagan | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC92" class="line" lang="plaintext"> libdivsufsort | 4 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC93" class="line" lang="plaintext"> librdp-taxonomy-tree-java | 4 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC94" class="line" lang="plaintext"> maffilter | 4 | {bio} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -111,7 +111,6 @@ Last-Update: Tue, 23 Jun 2020 01:42:03 +0000</td>
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<pre style="margin: 0;"> <span id="LC111" class="line" lang="plaintext"> qrisk2 | 4 | {practice} | </span>
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<pre style="margin: 0;"> <span id="LC112" class="line" lang="plaintext"> radiant | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC113" class="line" lang="plaintext"> rdp-classifier | 4 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC114" class="line" lang="plaintext"> rtax | 4 | {cloud,bio} | </span>
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<pre style="margin: 0;"> <span id="LC114" class="line" lang="plaintext"> scythe | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC115" class="line" lang="plaintext"> segemehl | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC116" class="line" lang="plaintext"> sickle | 4 | {bio} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -161,6 +160,7 @@ Last-Update: Tue, 23 Jun 2020 01:42:03 +0000</td>
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<pre style="margin: 0;"> <span id="LC160" class="line" lang="plaintext"> relion | 3 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC161" class="line" lang="plaintext"> repeatmasker-recon | 3 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC162" class="line" lang="plaintext"> roguenarok | 3 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC163" class="line" lang="plaintext"> rtax | 3 | {cloud,bio} | </span>
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<pre style="margin: 0;"> <span id="LC164" class="line" lang="plaintext"> samblaster | 3 | {bio,covid-19} | </span>
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<pre style="margin: 0;"> <span id="LC165" class="line" lang="plaintext"> scrm | 3 | {bio} | </span>
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166
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<pre style="margin: 0;"> <span id="LC166" class="line" lang="plaintext"> sga | 3 | {bio} | </span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="179" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="179" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -179,6 +179,7 @@ Last-Update: Tue, 23 Jun 2020 01:42:03 +0000</td>
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179
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179
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<pre style="margin: 0;"> <span id="LC179" class="line" lang="plaintext"> busco | 2 | {covid-19,bio} | </span>
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180
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180
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<pre style="margin: 0;"> <span id="LC180" class="line" lang="plaintext"> embassy-phylip | 2 | {cloud,bio} | </span>
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181
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181
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<pre style="margin: 0;"> <span id="LC181" class="line" lang="plaintext"> emboss-explorer | 2 | {bio} | </span>
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182
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<pre style="margin: 0;">+<span id="LC182" class="line" lang="plaintext"> libctapimkt | 2 | {practice} | </span>
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182
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183
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<pre style="margin: 0;"> <span id="LC183" class="line" lang="plaintext"> libsbml | 2 | {bio-dev} | </span>
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183
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184
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<pre style="margin: 0;"> <span id="LC184" class="line" lang="plaintext"> oscar | 2 | {data,tools,practice} | </span>
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184
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185
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<pre style="margin: 0;"> <span id="LC185" class="line" lang="plaintext"> pal2nal | 2 | {bio} | </span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="194" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="195" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -194,7 +195,6 @@ Last-Update: Tue, 23 Jun 2020 01:42:03 +0000</td>
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194
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195
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<pre style="margin: 0;"> <span id="LC195" class="line" lang="plaintext"> cufflinks | 1 | {cloud,bio} | </span>
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195
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196
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<pre style="margin: 0;"> <span id="LC196" class="line" lang="plaintext"> gatb-core | 1 | {bio-dev} | </span>
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197
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<pre style="margin: 0;"> <span id="LC197" class="line" lang="plaintext"> libchado-perl | 1 | {bio-dev} | </span>
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<pre style="margin: 0;">-<span id="LC197" class="line" lang="plaintext"> libctapimkt | 1 | {practice} | </span>
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<pre style="margin: 0;"> <span id="LC198" class="line" lang="plaintext"> libmialm | 1 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC199" class="line" lang="plaintext"> libvistaio | 1 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC200" class="line" lang="plaintext"> libxdf | 1 | {imaging-dev} | </span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="253" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -253,7 +253,6 @@ Last-Update: Tue, 23 Jun 2020 01:42:03 +0000</td>
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253
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253
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<pre style="margin: 0;"> <span id="LC253" class="line" lang="plaintext"> metastudent-data-2 | 0 | {bio} | </span>
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254
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<pre style="margin: 0;"> <span id="LC254" class="line" lang="plaintext"> miaviewit | 0 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC255" class="line" lang="plaintext"> milib | 0 | {covid-19,bio-dev} | </span>
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256
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<pre style="margin: 0;">-<span id="LC256" class="line" lang="plaintext"> mssstest | 0 | {tools} | </span>
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<pre style="margin: 0;"> <span id="LC256" class="line" lang="plaintext"> nanosv | 0 | {bio,covid-19} | </span>
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258
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<pre style="margin: 0;"> <span id="LC257" class="line" lang="plaintext"> ncbi-vdb | 0 | {bio-dev} | </span>
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258
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<pre style="margin: 0;"> <span id="LC258" class="line" lang="plaintext"> opencfu | 0 | {laboratory} | </span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="281" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="280" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -281,6 +280,7 @@ Last-Update: Tue, 23 Jun 2020 01:42:03 +0000</td>
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281
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280
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<pre style="margin: 0;"> <span id="LC280" class="line" lang="plaintext"> varscan | 0 | {bio,covid-19} | </span>
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<pre style="margin: 0;"> <span id="LC281" class="line" lang="plaintext"> vtk-dicom | 0 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC282" class="line" lang="plaintext"> bustools | -1 | {bio,covid-19} | </span>
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<pre style="margin: 0;">+<span id="LC283" class="line" lang="plaintext"> mssstest | -1 | {tools} | </span>
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<pre style="margin: 0;"> <span id="LC284" class="line" lang="plaintext"> pycoqc | -1 | {covid-19,bio} | </span>
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<pre style="margin: 0;"> <span id="LC285" class="line" lang="plaintext"> shovill | -1 | {covid-19,bio} | </span>
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<pre style="margin: 0;"> <span id="LC286" class="line" lang="plaintext"> tiddit | -1 | {bio,covid-19} | </span>
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