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<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/med-team/community/helper-scripts">Debian Med / community / helper-scripts</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/community/helper-scripts/-/commit/b5bd119d26da52b1712f8ceb8f82a1f16f9666a0">b5bd119d</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-06-24T13:42:57+00:00</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">automatic update
</pre>
</li>
</ul>
<h4>2 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#f6d55d24085decec06151dd27f30199089d856ca">
debian-med-tests.txt
</a>
</li>
<li class="file-stats">
<a href="#2654e31016bcee9bbe05d462121706cc8ed368af">
outdated_med-packages.txt
</a>
</li>
</ul>
<h4>Changes:</h4>
<li id="f6d55d24085decec06151dd27f30199089d856ca">
<a href="https://salsa.debian.org/med-team/community/helper-scripts/-/commit/b5bd119d26da52b1712f8ceb8f82a1f16f9666a0#f6d55d24085decec06151dd27f30199089d856ca"><strong>debian-med-tests.txt</strong></a>
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="plaintext">Last-Update: Wed, 24 Jun 2020 <span class="idiff left right">01:42:04</span> +0000</span>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">Last-Update: Wed, 24 Jun 2020 <span class="idiff left right">13:42:03</span> +0000</span>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext"> Source | Vote | Tasks | Tags </span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext">-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------</span>
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<pre style="margin: 0;">-<span id="LC5" class="line" lang="plaintext"> dcmtk | 18<span class="idiff left right">2</span> | {imaging,covid-19} | </span>
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<pre style="margin: 0;">-<span id="LC6" class="line" lang="plaintext"> orthanc | 9<span class="idiff left right">2</span> | {imaging,covid-19,practice} | </span>
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<pre style="margin: 0;">-<span id="LC7" class="line" lang="plaintext"> gdcm | 4<span class="idiff left right">6</span> | {imaging-dev} | </span>
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<pre style="margin: 0;">-<span id="LC8" class="line" lang="plaintext"> orthanc-wsi | 4<span class="idiff left right">0</span> | {practice,laboratory,covid-19,oncology,his,imaging} | </span>
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<pre style="margin: 0;">-<span id="LC9" class="line" lang="plaintext"> htsjdk | 3<span class="idiff left right">3</span> | {bio-dev} | </span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext"> dcmtk | 18<span class="idiff left right">8</span> | {imaging,covid-19} | </span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext"> orthanc | 9<span class="idiff left right">4</span> | {imaging,covid-19,practice} | </span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext"> gdcm | 4<span class="idiff left right">5</span> | {imaging-dev} | </span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext"> orthanc-wsi | 4<span class="idiff left right">3</span> | {practice,laboratory,covid-19,oncology,his,imaging} | </span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="plaintext"> htsjdk | 3<span class="idiff left right">2</span> | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="plaintext"> dcm2niix | 25 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="plaintext"> dicomscope | 25 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC12" class="line" lang="plaintext"> dicom3tools | 24 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC13" class="line" lang="plaintext"> gdcm | 21 | {covid-19,imaging} | </span>
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<pre style="margin: 0;"> <span id="LC14" class="line" lang="plaintext"> ngs-sdk | 19 | {bio-dev} | </span>
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<pre style="margin: 0;">-<span id="LC15" class="line" lang="plaintext"> gnumed-server | 1<span class="idiff left right">7</span> | {practice,covid-19} | </span>
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="plaintext"> gnumed-server | 1<span class="idiff left right">6</span> | {practice,covid-19} | </span>
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<pre style="margin: 0;"> <span id="LC16" class="line" lang="plaintext"> gdcm | 13 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC17" class="line" lang="plaintext"> invesalius | 12 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC18" class="line" lang="plaintext"> minc-tools | 12 | {imaging} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -26,10 +26,10 @@ Last-Update: Wed, 24 Jun 2020 01:42:04 +0000</td>
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<pre style="margin: 0;"> <span id="LC26" class="line" lang="plaintext"> biosig4c++ | 9 | {physics,imaging} | </span>
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<pre style="margin: 0;"> <span id="LC27" class="line" lang="plaintext"> dicompyler | 9 | {oncology} | </span>
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<pre style="margin: 0;"> <span id="LC28" class="line" lang="plaintext"> king | 9 | {imaging,typesetting} | </span>
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<pre style="margin: 0;">+<span id="LC29" class="line" lang="plaintext"> ngs-sdk | 9 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC30" class="line" lang="plaintext"> vtk-dicom | 9 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC31" class="line" lang="plaintext"> librg-utils-perl | 8 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC32" class="line" lang="plaintext"> melting | 8 | {bio,cloud} | </span>
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<pre style="margin: 0;">-<span id="LC32" class="line" lang="plaintext"> ngs-sdk | 8 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC33" class="line" lang="plaintext"> obitools | 8 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC34" class="line" lang="plaintext"> openslide | 8 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC35" class="line" lang="plaintext"> stacks | 8 | {bio} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -43,7 +43,6 @@ Last-Update: Wed, 24 Jun 2020 01:42:04 +0000</td>
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<pre style="margin: 0;"> <span id="LC43" class="line" lang="plaintext"> ea-utils | 6 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC44" class="line" lang="plaintext"> orthanc-dicomweb | 6 | {covid-19,imaging} | </span>
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<pre style="margin: 0;"> <span id="LC45" class="line" lang="plaintext"> phyutility | 6 | {bio,cloud} | </span>
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<pre style="margin: 0;">-<span id="LC46" class="line" lang="plaintext"> pymia | 6 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC46" class="line" lang="plaintext"> sibsim4 | 6 | {bio,cloud} | </span>
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<pre style="margin: 0;"> <span id="LC47" class="line" lang="plaintext"> sigma-align | 6 | {bio,bio-phylogeny,cloud} | </span>
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<pre style="margin: 0;"> <span id="LC48" class="line" lang="plaintext"> spread-phy | 6 | {bio,bio-phylogeny} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -52,6 +51,7 @@ Last-Update: Wed, 24 Jun 2020 01:42:04 +0000</td>
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<pre style="margin: 0;"> <span id="LC51" class="line" lang="plaintext"> biomaj3-daemon | 5 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC52" class="line" lang="plaintext"> brig | 5 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC53" class="line" lang="plaintext"> ecopcr | 5 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC54" class="line" lang="plaintext"> ghmm | 5 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC55" class="line" lang="plaintext"> jaligner | 5 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC56" class="line" lang="plaintext"> lagan | 5 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC57" class="line" lang="plaintext"> libminc | 5 | {imaging-dev} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -61,6 +61,7 @@ Last-Update: Wed, 24 Jun 2020 01:42:04 +0000</td>
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<pre style="margin: 0;"> <span id="LC61" class="line" lang="plaintext"> neobio | 5 | {bio,cloud} | </span>
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<pre style="margin: 0;"> <span id="LC62" class="line" lang="plaintext"> piler | 5 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC63" class="line" lang="plaintext"> predictprotein | 5 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC64" class="line" lang="plaintext"> pymia | 5 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC65" class="line" lang="plaintext"> rambo-k | 5 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC66" class="line" lang="plaintext"> rdp-alignment | 5 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC67" class="line" lang="plaintext"> rdp-readseq | 5 | {bio} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -85,7 +86,6 @@ Last-Update: Wed, 24 Jun 2020 01:42:04 +0000</td>
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<pre style="margin: 0;"> <span id="LC86" class="line" lang="plaintext"> embassy-domsearch | 4 | {bio,cloud} | </span>
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<pre style="margin: 0;"> <span id="LC87" class="line" lang="plaintext"> gatb-core | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC88" class="line" lang="plaintext"> getdata | 4 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC88" class="line" lang="plaintext"> ghmm | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC89" class="line" lang="plaintext"> hinge | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC90" class="line" lang="plaintext"> ipig | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC91" class="line" lang="plaintext"> jellyfish1 | 4 | {bio} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -147,6 +147,7 @@ Last-Update: Wed, 24 Jun 2020 01:42:04 +0000</td>
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<pre style="margin: 0;"> <span id="LC147" class="line" lang="plaintext"> metaphlan2 | 3 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC148" class="line" lang="plaintext"> mptp | 3 | {bio} | </span>
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149
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<pre style="margin: 0;"> <span id="LC149" class="line" lang="plaintext"> nanook | 3 | {covid-19,bio} | </span>
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<pre style="margin: 0;">+<span id="LC150" class="line" lang="plaintext"> ngs-sdk | 3 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC151" class="line" lang="plaintext"> patman | 3 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC152" class="line" lang="plaintext"> phipack | 3 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC153" class="line" lang="plaintext"> phybin | 3 | {bio} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -200,7 +201,7 @@ Last-Update: Wed, 24 Jun 2020 01:42:04 +0000</td>
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201
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<pre style="margin: 0;"> <span id="LC201" class="line" lang="plaintext"> libxdf | 1 | {imaging-dev} | </span>
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202
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<pre style="margin: 0;"> <span id="LC202" class="line" lang="plaintext"> multiqc | 1 | {covid-19,bio} | </span>
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203
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<pre style="margin: 0;"> <span id="LC203" class="line" lang="plaintext"> murasaki | 1 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC203" class="line" lang="plaintext"> n<span class="idiff left right">gs-sdk </span> | 1 | {bio-dev} | </span>
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204
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<pre style="margin: 0;">+<span id="LC204" class="line" lang="plaintext"> n<span class="idiff left right">cbi-vdb</span> | 1 | {bio-dev} | </span>
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204
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205
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<pre style="margin: 0;"> <span id="LC205" class="line" lang="plaintext"> opensurgsim | 1 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC206" class="line" lang="plaintext"> python-py2bit | 1 | {bio,bio-dev} | </span>
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207
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<pre style="margin: 0;"> <span id="LC207" class="line" lang="plaintext"> python-scitrack | 1 | {covid-19} | </span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="208" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -208,6 +209,8 @@ Last-Update: Wed, 24 Jun 2020 01:42:04 +0000</td>
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209
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<pre style="margin: 0;"> <span id="LC209" class="line" lang="plaintext"> relion | 1 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC210" class="line" lang="plaintext"> seqan | 1 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC211" class="line" lang="plaintext"> simpleitk | 1 | {imaging-dev} | </span>
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<pre style="margin: 0;">+<span id="LC212" class="line" lang="plaintext"> thesias | 1 | {covid-19,bio} | </span>
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<pre style="margin: 0;">+<span id="LC213" class="line" lang="plaintext"> tiddit | 1 | {bio,covid-19} | </span>
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<pre style="margin: 0;"> <span id="LC214" class="line" lang="plaintext"> volpack | 1 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC215" class="line" lang="plaintext"> wtdbg2 | 1 | {covid-19} | </span>
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<pre style="margin: 0;"> <span id="LC216" class="line" lang="plaintext"> acedb | 0 | {cloud,bio} | </span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="254" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -254,7 +257,6 @@ Last-Update: Wed, 24 Jun 2020 01:42:04 +0000</td>
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257
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<pre style="margin: 0;"> <span id="LC257" class="line" lang="plaintext"> miaviewit | 0 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC258" class="line" lang="plaintext"> milib | 0 | {covid-19,bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC259" class="line" lang="plaintext"> nanosv | 0 | {bio,covid-19} | </span>
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257
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<pre style="margin: 0;">-<span id="LC257" class="line" lang="plaintext"> ncbi-vdb | 0 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC260" class="line" lang="plaintext"> opencfu | 0 | {laboratory} | </span>
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<pre style="margin: 0;"> <span id="LC261" class="line" lang="plaintext"> orthanc-imagej | 0 | {imaging} | </span>
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260
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262
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<pre style="margin: 0;"> <span id="LC262" class="line" lang="plaintext"> parallel-fastq-dump | 0 | {covid-19} | </span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="274" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="276" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -274,7 +276,6 @@ Last-Update: Wed, 24 Jun 2020 01:42:04 +0000</td>
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274
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276
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<pre style="margin: 0;"> <span id="LC276" class="line" lang="plaintext"> spaln | 0 | {covid-19,bio} | </span>
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275
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277
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<pre style="margin: 0;"> <span id="LC277" class="line" lang="plaintext"> srf | 0 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC278" class="line" lang="plaintext"> stringtie | 0 | {bio,covid-19} | </span>
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277
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<pre style="margin: 0;">-<span id="LC277" class="line" lang="plaintext"> thesias | 0 | {covid-19,bio} | </span>
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<pre style="margin: 0;"> <span id="LC279" class="line" lang="plaintext"> tophat-recondition | 0 | {bio,covid-19} | </span>
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279
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<pre style="margin: 0;"> <span id="LC280" class="line" lang="plaintext"> varna | 0 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC281" class="line" lang="plaintext"> varscan | 0 | {bio,covid-19} | </span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="283" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -283,6 +284,5 @@ Last-Update: Wed, 24 Jun 2020 01:42:04 +0000</td>
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<pre style="margin: 0;"> <span id="LC284" class="line" lang="plaintext"> mssstest | -1 | {tools} | </span>
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<pre style="margin: 0;"> <span id="LC285" class="line" lang="plaintext"> pycoqc | -1 | {covid-19,bio} | </span>
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<pre style="margin: 0;"> <span id="LC286" class="line" lang="plaintext"> shovill | -1 | {covid-19,bio} | </span>
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<pre style="margin: 0;">-<span id="LC286" class="line" lang="plaintext"> tiddit | -1 | {bio,covid-19} | </span>
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<pre style="margin: 0;"> <span id="LC287" class="line" lang="plaintext">(311 rows)</span>
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<pre style="margin: 0;"> <span id="LC288" class="line" lang="plaintext"></span></pre>
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