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<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/med-team/tombo">Debian Med / tombo</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/tombo/-/commit/3072e5ade426708a943dec3d837add3ee7da2123">3072e5ad</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-06-24T14:32:20+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Fix section
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/tombo/-/commit/0c9ddc3ccd5d713d09ac59ca098070c688d75588">0c9ddc3c</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-06-24T14:33:17+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Fix typo
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/tombo/-/commit/99931f70936832af0c9c9d57d7c889c5554e7653">99931f70</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-06-24T14:34:35+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">libjs-mathjax
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/tombo/-/commit/d02064796535bc3783c98331b48f5d74e292d337">d0206479</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-06-24T14:41:08+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">2to3 patch
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/tombo/-/commit/18c4bd63afe4fde21788762a51a8a7d37038c27c">18c4bd63</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-06-24T15:08:16+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Use Debian packaged MathJax
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/tombo/-/commit/28f3c4e69376bbbb5f30468a4f68440d2d8b7d43">28f3c4e6</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-06-24T16:00:35+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Upload to new
</pre>
</li>
</ul>
<h4>7 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
</a>
</li>
<li class="file-stats">
<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
</a>
</li>
<li class="file-stats">
<a href="#555c85016bd79aa8bbb523506af81b69d9c69534">
<span class="new-file">
+
debian/patches/2to3.patch
</span>
</a>
</li>
<li class="file-stats">
<a href="#f5a321ca812a311be649fb5ec973e395701495e8">
<span class="new-file">
+
debian/patches/mathjax.patch
</span>
</a>
</li>
<li class="file-stats">
<a href="#bc34014ab4b9a49dd7a27bdd8d352912607c3a96">
debian/patches/series
</a>
</li>
<li class="file-stats">
<a href="#8756c63497c8dc39f7773438edf53b220c773f67">
debian/rules
</a>
</li>
<li class="file-stats">
<a href="#ec21bc3fc0d6c40bf60d38cffbc8bb9ce210708b">
debian/tombo-doc.doc-base
</a>
</li>
</ul>
<h4>Changes:</h4>
<li id="9c96da0e9f91d7d8937b69b524702c106258f0d1">
<a href="https://salsa.debian.org/med-team/tombo/-/compare/e894e3514544dee2259f55ea84db3bd9c46f7f3a...28f3c4e69376bbbb5f30468a4f68440d2d8b7d43#9c96da0e9f91d7d8937b69b524702c106258f0d1"><strong>debian/changelog</strong></a>
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<td class="diff-line-num new_line old" data-linenumber="1" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="plaintext">tombo (1.5.1-1) <span class="idiff left right">UNRELEASED</span>; urgency=medium</span>
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<td class="diff-line-num new new_line" data-linenumber="1" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">tombo (1.5.1-1) <span class="idiff left right">unstable</span>; urgency=medium</span>
</pre>
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<td class="diff-line-num new_line" data-linenumber="2" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC2" class="line" lang="plaintext"></span>
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<td class="diff-line-num old_line" data-linenumber="3" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="diff-line-num new_line" data-linenumber="3" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext"> * Initial release (Closes: #963596)</span>
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<td class="diff-line-num old_line" data-linenumber="4" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="diff-line-num new_line" data-linenumber="4" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext"></span>
</pre>
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</table>
<br>
</li>
<li id="58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
<a href="https://salsa.debian.org/med-team/tombo/-/compare/e894e3514544dee2259f55ea84db3bd9c46f7f3a...28f3c4e69376bbbb5f30468a4f68440d2d8b7d43#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2"><strong>debian/control</strong></a>
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<table class="code white" style="font-family: monospace; font-size: 90%;" bgcolor="#fff" width="100%" cellpadding="0" cellspacing="0">
<tr class="line_holder match" id="" style="line-height: 1.6;">
<td class="diff-line-num unfold js-unfold old_line" data-linenumber="12" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="12" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -12,6 +12,7 @@ Build-Depends: debhelper-compat (= 13),</td>
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<td class="diff-line-num old_line" data-linenumber="12" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="diff-line-num new_line" data-linenumber="12" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC12" class="line" lang="plaintext"> python3-sphinx,</span>
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<td class="diff-line-num old_line" data-linenumber="13" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="diff-line-num new_line" data-linenumber="13" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC13" class="line" lang="plaintext"> python3-sphinx-rtd-theme,</span>
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<td class="diff-line-num old_line" data-linenumber="14" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="diff-line-num new_line" data-linenumber="14" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC14" class="line" lang="plaintext"> python3-sphinx-argparse,</span>
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<td class="diff-line-num new old_line" data-linenumber="15" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="15" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="plaintext"> libjs-mathjax,</span>
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<td class="diff-line-num old_line" data-linenumber="15" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="diff-line-num new_line" data-linenumber="16" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC16" class="line" lang="plaintext"> python3-h5py <!nocheck>,</span>
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<td class="diff-line-num old_line" data-linenumber="16" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="diff-line-num new_line" data-linenumber="17" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC17" class="line" lang="plaintext"> python3-mappy <!nocheck>,</span>
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<td class="diff-line-num old_line" data-linenumber="17" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="diff-line-num new_line" data-linenumber="18" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC18" class="line" lang="plaintext"> python3-numpy <!nocheck>,</span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="45" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="46" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -45,6 +46,7 @@ Architecture: all</td>
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<td class="diff-line-num new_line" data-linenumber="46" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC46" class="line" lang="plaintext">Section: doc</span>
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<td class="diff-line-num new_line" data-linenumber="47" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC47" class="line" lang="plaintext">Depends: ${sphinxdoc:Depends},</span>
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<td class="diff-line-num old_line" data-linenumber="47" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="diff-line-num new_line" data-linenumber="48" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC48" class="line" lang="plaintext"> ${misc:Depends},</span>
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<td class="diff-line-num new new_line" data-linenumber="49" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC49" class="line" lang="plaintext"> libjs-mathjax</span>
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<td class="diff-line-num old_line" data-linenumber="48" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="diff-line-num new_line" data-linenumber="50" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC50" class="line" lang="plaintext">Description: identification of modified nucleotides from raw nanopore sequencing data (doc)</span>
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<td class="diff-line-num old_line" data-linenumber="49" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="diff-line-num new_line" data-linenumber="51" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC51" class="line" lang="plaintext"> Tombo is a suite of tools primarily for the identification of modified</span>
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<pre style="margin: 0;"> <span id="LC52" class="line" lang="plaintext"> nucleotides from nanopore sequencing data. Tombo also provides tools for</span>
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<a href="https://salsa.debian.org/med-team/tombo/-/compare/e894e3514544dee2259f55ea84db3bd9c46f7f3a...28f3c4e69376bbbb5f30468a4f68440d2d8b7d43#555c85016bd79aa8bbb523506af81b69d9c69534"><strong>debian/patches/2to3.patch</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="diff"><span class="p">Author: Andreas Tille <tille@debian.org></span></span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="diff"><span class="p">Last-Update: Mon, 15 Jun 2020 11:13:59 +0200</span></span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="diff"><span class="p">Description: 2to3 patch</span></span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="diff"></span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="diff">--- a/scripts/dump_per_read_statistics.py</span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/scripts/dump_per_read_statistics.py</span></span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="diff"><span class="p">@@ -1,4 +1,4 @@</span></span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-#! /usr/bin/env python</span></span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+#! /usr/bin/env python3</span></span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="diff"> """Dump per-read statistics</span>
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="diff"> </span>
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="diff"> This script takes a per-read statistics file and dumps its contents out into a tab-separated values file. The columns in the file are 'chrm', 'pos', 'strand', 'read_id' and 'stat'.</span>
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="diff"><span class="p">@@ -19,8 +19,8 @@</span> def extract_per_read_stats(input_file, o</span>
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="diff"> with open(output_file, 'w') as out_fp:</span>
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="diff"> out_fp.write('{}\t{}\t{}\t{}\t{}\n'.format(</span>
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="diff"> 'chrm', 'pos', 'strand', 'read_id', 'stat'))</span>
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- for (chrm, strand), cs_blocks in pr_stats.blocks_index.items():</span></span>
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<pre style="margin: 0;">+<span id="LC18" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- for start, block_name in cs_blocks.items():</span></span>
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ for (chrm, strand), cs_blocks in list(pr_stats.blocks_index.items()):</span></span>
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<pre style="margin: 0;">+<span id="LC20" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ for start, block_name in list(cs_blocks.items()):</span></span>
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<pre style="margin: 0;">+<span id="LC21" class="line" lang="diff"> for pos, stat, read_id in pr_stats.get_region_per_read_stats(</span>
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<pre style="margin: 0;">+<span id="LC22" class="line" lang="diff"> intervalData(chrm, start, start + pr_stats.region_size,</span>
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<pre style="margin: 0;">+<span id="LC23" class="line" lang="diff"> strand)):</span></pre>
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<a href="https://salsa.debian.org/med-team/tombo/-/compare/e894e3514544dee2259f55ea84db3bd9c46f7f3a...28f3c4e69376bbbb5f30468a4f68440d2d8b7d43#f5a321ca812a311be649fb5ec973e395701495e8"><strong>debian/patches/mathjax.patch</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="diff"><span class="p">Author: Andreas Tille <tille@debian.org></span></span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="diff"><span class="p">Last-Update: Mon, 15 Jun 2020 11:13:59 +0200</span></span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="diff"><span class="p">Description: Use Debian packaged MathJax</span></span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="diff"></span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="diff">--- a/docs/conf.py</span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/docs/conf.py</span></span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="diff"><span class="p">@@ -26,7 +26,7 @@</span> sys.path.insert(0, os.path.abspath('../t</span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="diff"> extensions = ['sphinx.ext.autodoc', 'sphinx.ext.viewcode',</span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="diff"> 'sphinx.ext.intersphinx', 'sphinx.ext.mathjax', 'sphinxarg.ext',</span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="diff"> 'sphinx.ext.napoleon',]</span>
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-mathjax_path = "https://cdn.mathjax.org/mathjax/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML"</span></span>
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+mathjax_path = "file:///usr/share/javascript/mathjax/MathJax.js?config=TeX-AMS-MML_HTMLorMML"</span></span>
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="diff"> </span>
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="diff"> # don't include class inheritence in docs: https://stackoverflow.com/questions/46279030/how-can-i-prevent-sphinx-from-listing-object-as-a-base-class</span>
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="diff"> from sphinx.ext.autodoc import ClassDocumenter, _</span></pre>
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<li id="bc34014ab4b9a49dd7a27bdd8d352912607c3a96">
<a href="https://salsa.debian.org/med-team/tombo/-/compare/e894e3514544dee2259f55ea84db3bd9c46f7f3a...28f3c4e69376bbbb5f30468a4f68440d2d8b7d43#bc34014ab4b9a49dd7a27bdd8d352912607c3a96"><strong>debian/patches/series</strong></a>
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1
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<pre style="margin: 0;"> <span id="LC1" class="line" lang="plaintext">no_future.patch</span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="plaintext">2to3.patch</span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext">mathjax.patch</span></pre>
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<a href="https://salsa.debian.org/med-team/tombo/-/compare/e894e3514544dee2259f55ea84db3bd9c46f7f3a...28f3c4e69376bbbb5f30468a4f68440d2d8b7d43#8756c63497c8dc39f7773438edf53b220c773f67"><strong>debian/rules</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -8,7 +8,7 @@ export DEB_BUILD_MAINT_OPTIONS=hardening=+all</td>
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<pre style="margin: 0;"> <span id="LC8" class="line" lang="plaintext">%:</span>
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="plaintext"> dh $@ --with python3,sphinxdoc --buildsystem=pybuild</span>
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">-<span id="LC11" class="line" lang="plaintext">overide_dh_fixperms:</span>
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="plaintext">over<span class="idiff left right">r</span>ide_dh_fixperms:</span>
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<pre style="margin: 0;"> <span id="LC12" class="line" lang="plaintext"> dh_fixperms</span>
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<pre style="margin: 0;"> <span id="LC13" class="line" lang="plaintext"> find debian -name "*.model" -exec chmod -x \{\} \;</span>
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<pre style="margin: 0;"> <span id="LC14" class="line" lang="plaintext"></span>
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<a href="https://salsa.debian.org/med-team/tombo/-/compare/e894e3514544dee2259f55ea84db3bd9c46f7f3a...28f3c4e69376bbbb5f30468a4f68440d2d8b7d43#ec21bc3fc0d6c40bf60d38cffbc8bb9ce210708b"><strong>debian/tombo-doc.doc-base</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -5,7 +5,7 @@ Abstract: identification of modified nucleotides from raw nanopore sequencing da</td>
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="plaintext"> Tombo is a suite of tools primarily for the identification of modified</span>
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="plaintext"> nucleotides from nanopore sequencing data. Tombo also provides tools for</span>
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="plaintext"> the analysis and visualization of raw nanopore signal.</span>
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<pre style="margin: 0;">-<span id="LC8" class="line" lang="plaintext">Section: Science/<span class="idiff left right">{Biology,Medicine} # see /usr/share/doc/doc-base/doc-base.txt.gz "2.3.3. The `section' field"</span></span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext">Section: Science/<span class="idiff left right">Biology</span></span>
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="plaintext">Format: html</span>
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="plaintext">Index: /usr/share/doc/tombo/html/index.html</span>
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