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<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/med-team/community/helper-scripts">Debian Med / community / helper-scripts</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/community/helper-scripts/-/commit/711da4b42d74c8d23189a38b59fdf11bf936083e">711da4b4</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-06-25T13:43:00+00:00</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">automatic update
</pre>
</li>
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<h4>2 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#f6d55d24085decec06151dd27f30199089d856ca">
debian-med-tests.txt
</a>
</li>
<li class="file-stats">
<a href="#2654e31016bcee9bbe05d462121706cc8ed368af">
outdated_med-packages.txt
</a>
</li>
</ul>
<h4>Changes:</h4>
<li id="f6d55d24085decec06151dd27f30199089d856ca">
<a href="https://salsa.debian.org/med-team/community/helper-scripts/-/commit/711da4b42d74c8d23189a38b59fdf11bf936083e#f6d55d24085decec06151dd27f30199089d856ca"><strong>debian-med-tests.txt</strong></a>
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="plaintext">Last-Update: Thu, 25 Jun 2020 <span class="idiff left right">01:42:04</span> +0000</span>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">Last-Update: Thu, 25 Jun 2020 <span class="idiff left right">13:42:03</span> +0000</span>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext"> Source | Vote | Tasks | Tags </span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext">-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------</span>
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<pre style="margin: 0;">-<span id="LC5" class="line" lang="plaintext"> dcmtk | 18<span class="idiff left right">8</span> | {imaging,covid-19} | </span>
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<pre style="margin: 0;">-<span id="LC6" class="line" lang="plaintext"> orthanc | 9<span class="idiff left right">4</span> | {imaging,covid-19,practice} | </span>
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<pre style="margin: 0;">-<span id="LC7" class="line" lang="plaintext"> gdcm | 4<span class="idiff left right">5</span> | {imaging-dev} | </span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext"> dcmtk | 18<span class="idiff left right">9</span> | {imaging,covid-19} | </span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext"> orthanc | 9<span class="idiff left right">5</span> | {imaging,covid-19,practice} | </span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext"> gdcm | 4<span class="idiff left right">6</span> | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC8" class="line" lang="plaintext"> orthanc-wsi | 43 | {practice,laboratory,covid-19,oncology,his,imaging} | </span>
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<pre style="margin: 0;">-<span id="LC9" class="line" lang="plaintext"> htsjdk | 32 | {bio-dev} | </span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="plaintext"> htsjdk | 33 | {bio-dev} | </span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="plaintext"> dicomscope | 26 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="plaintext"> dcm2niix | 25 | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC11" class="line" lang="plaintext"> dicomscope | 25 | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC12" class="line" lang="plaintext"> dicom3tools | 24 | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="plaintext"> dicom3tools | 25 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC13" class="line" lang="plaintext"> gdcm | 21 | {covid-19,imaging} | </span>
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<pre style="margin: 0;">-<span id="LC14" class="line" lang="plaintext"> ngs-sdk | <span class="idiff left right">19</span> | {bio-dev} | </span>
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="plaintext"> ngs-sdk | <span class="idiff left right">20</span> | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC15" class="line" lang="plaintext"> gnumed-server | 16 | {practice,covid-19} | </span>
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<pre style="margin: 0;"> <span id="LC16" class="line" lang="plaintext"> gdcm | 13 | {imaging-dev} | </span>
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<pre style="margin: 0;">-<span id="LC17" class="line" lang="plaintext"> invesalius | 1<span class="idiff left right">2</span> | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="plaintext"> invesalius | 1<span class="idiff left right">3</span> | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC18" class="line" lang="plaintext"> minc-tools | 12 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC19" class="line" lang="plaintext"> adun.app | 11 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC20" class="line" lang="plaintext"> insighttoolkit4 | 11 | {imaging-dev} | </span>
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<pre style="margin: 0;">-<span id="LC21" class="line" lang="plaintext"> jebl2 | 10 | {bio-dev} | </span>
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<pre style="margin: 0;">-<span id="LC22" class="line" lang="plaintext"> pixelmed | 10 | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC21" class="line" lang="plaintext"> jebl2 | 11 | {bio-dev} | </span>
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<pre style="margin: 0;">+<span id="LC22" class="line" lang="plaintext"> pixelmed | 11 | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC23" class="line" lang="plaintext"> vsearch | 11 | {bio,covid-19} | </span>
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<pre style="margin: 0;"> <span id="LC24" class="line" lang="plaintext"> plastimatch | 10 | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC24" class="line" lang="plaintext"> psychopy | 10 | {psychology} | </span>
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<pre style="margin: 0;">-<span id="LC25" class="line" lang="plaintext"> vsearch | 10 | {bio,covid-19} | </span>
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<pre style="margin: 0;"> <span id="LC25" class="line" lang="plaintext"> biosig4c++ | 9 | {physics,imaging} | </span>
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<pre style="margin: 0;"> <span id="LC26" class="line" lang="plaintext"> dicompyler | 9 | {oncology} | </span>
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<pre style="margin: 0;"> <span id="LC27" class="line" lang="plaintext"> king | 9 | {imaging,typesetting} | </span>
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<pre style="margin: 0;">-<span id="LC29" class="line" lang="plaintext"> ngs-sdk | 9 | {bio-dev} | </span>
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<pre style="margin: 0;">+<span id="LC28" class="line" lang="plaintext"> openslide | 9 | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC29" class="line" lang="plaintext"> psychopy | 9 | {psychology} | </span>
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<pre style="margin: 0;"> <span id="LC30" class="line" lang="plaintext"> vtk-dicom | 9 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC31" class="line" lang="plaintext"> librg-utils-perl | 8 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC32" class="line" lang="plaintext"> melting | 8 | {bio,cloud} | </span>
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<pre style="margin: 0;">+<span id="LC33" class="line" lang="plaintext"> ngs-sdk | 8 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC34" class="line" lang="plaintext"> obitools | 8 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC34" class="line" lang="plaintext"> openslide | 8 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC35" class="line" lang="plaintext"> stacks | 8 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC36" class="line" lang="plaintext"> ea-utils | 7 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC37" class="line" lang="plaintext"> fastlink | 7 | {bio,cloud} | </span>
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<pre style="margin: 0;"> <span id="LC38" class="line" lang="plaintext"> king-probe | 7 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC39" class="line" lang="plaintext"> ncbi-seg | 7 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC40" class="line" lang="plaintext"> orthanc-webviewer | 7 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC41" class="line" lang="plaintext"> seqsero | 7 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC42" class="line" lang="plaintext"> treeview | 7 | {bio,bio-phylogeny} | </span>
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<pre style="margin: 0;"> <span id="LC43" class="line" lang="plaintext"> biojava-live | 6 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC44" class="line" lang="plaintext"> biomaj3-cli | 6 | {cloud} | </span>
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<pre style="margin: 0;">-<span id="LC43" class="line" lang="plaintext"> ea-utils | 6 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC45" class="line" lang="plaintext"> jaligner | 6 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC46" class="line" lang="plaintext"> lagan | 6 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC47" class="line" lang="plaintext"> libdivsufsort | 6 | {bio-dev} | </span>
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<pre style="margin: 0;">+<span id="LC48" class="line" lang="plaintext"> maqview | 6 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC49" class="line" lang="plaintext"> orthanc-dicomweb | 6 | {covid-19,imaging} | </span>
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<pre style="margin: 0;"> <span id="LC50" class="line" lang="plaintext"> phyutility | 6 | {bio,cloud} | </span>
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<pre style="margin: 0;"> <span id="LC51" class="line" lang="plaintext"> sibsim4 | 6 | {bio,cloud} | </span>
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<pre style="margin: 0;"> <span id="LC52" class="line" lang="plaintext"> sigma-align | 6 | {bio,bio-phylogeny,cloud} | </span>
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<pre style="margin: 0;"> <span id="LC53" class="line" lang="plaintext"> spread-phy | 6 | {bio,bio-phylogeny} | </span>
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<pre style="margin: 0;"> <span id="LC54" class="line" lang="plaintext"> staden | 6 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC50" class="line" lang="plaintext"> <span class="idiff left right">treeview | 6 | {bio,bio-phylogeny}</span> | </span>
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<pre style="margin: 0;">+<span id="LC55" class="line" lang="plaintext"> <span class="idiff left right">anfo | 5 | {bio,cloud} </span> | </span>
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<pre style="margin: 0;"> <span id="LC56" class="line" lang="plaintext"> biomaj3-daemon | 5 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC57" class="line" lang="plaintext"> brig | 5 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC58" class="line" lang="plaintext"> ecopcr | 5 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC59" class="line" lang="plaintext"> getdata | 5 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC60" class="line" lang="plaintext"> ghmm | 5 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC55" class="line" lang="plaintext"> jaligner | 5 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC56" class="line" lang="plaintext"> lagan | 5 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC61" class="line" lang="plaintext"> libminc | 5 | {imaging-dev} | </span>
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<pre style="margin: 0;">-<span id="LC58" class="line" lang="plaintext"> m<span class="idiff left right">aqview | 5 | {bio} </span> | </span>
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<pre style="margin: 0;">+<span id="LC62" class="line" lang="plaintext"> m<span class="idiff left right">hap | 5 | {bio-ngs,bio}</span> | </span>
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<pre style="margin: 0;"> <span id="LC63" class="line" lang="plaintext"> microbegps | 5 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC64" class="line" lang="plaintext"> mipe | 5 | {bio,cloud} | </span>
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<pre style="margin: 0;">+<span id="LC65" class="line" lang="plaintext"> mlv-smile | 5 | {bio,cloud} | </span>
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<pre style="margin: 0;"> <span id="LC66" class="line" lang="plaintext"> neobio | 5 | {bio,cloud} | </span>
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<pre style="margin: 0;">+<span id="LC67" class="line" lang="plaintext"> paraclu | 5 | {bio,cloud} | </span>
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<pre style="margin: 0;"> <span id="LC68" class="line" lang="plaintext"> piler | 5 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC69" class="line" lang="plaintext"> predictprotein | 5 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC70" class="line" lang="plaintext"> pymia | 5 | {imaging-dev} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -69,13 +75,13 @@ Last-Update: Thu, 25 Jun 2020 01:42:04 +0000</td>
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<pre style="margin: 0;"> <span id="LC75" class="line" lang="plaintext"> saint | 5 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC76" class="line" lang="plaintext"> salmon | 5 | {bio,covid-19} | </span>
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<pre style="margin: 0;"> <span id="LC77" class="line" lang="plaintext"> seqmagick | 5 | {bio,covid-19} | </span>
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<pre style="margin: 0;">+<span id="LC78" class="line" lang="plaintext"> sickle | 5 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC79" class="line" lang="plaintext"> snap-aligner | 5 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC80" class="line" lang="plaintext"> squizz | 5 | {cloud,bio} | </span>
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<pre style="margin: 0;"> <span id="LC81" class="line" lang="plaintext"> tnseq-transit | 5 | {bio,covid-19} | </span>
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<pre style="margin: 0;"> <span id="LC82" class="line" lang="plaintext"> transtermhp | 5 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC83" class="line" lang="plaintext"> alter-sequence-alignment | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC84" class="line" lang="plaintext"> ampliconnoise | 4 | {cloud,bio} | </span>
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<pre style="margin: 0;">-<span id="LC78" class="line" lang="plaintext"> anfo | 4 | {bio,cloud} | </span>
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<pre style="margin: 0;"> <span id="LC85" class="line" lang="plaintext"> arden | 4 | {cloud,bio} | </span>
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<pre style="margin: 0;"> <span id="LC86" class="line" lang="plaintext"> bart-view | 4 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC87" class="line" lang="plaintext"> beast-mcmc | 4 | {bio-phylogeny,bio} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -85,23 +91,18 @@ Last-Update: Thu, 25 Jun 2020 01:42:04 +0000</td>
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<pre style="margin: 0;"> <span id="LC91" class="line" lang="plaintext"> embassy-domalign | 4 | {bio,cloud} | </span>
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<pre style="margin: 0;"> <span id="LC92" class="line" lang="plaintext"> embassy-domsearch | 4 | {bio,cloud} | </span>
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<pre style="margin: 0;"> <span id="LC93" class="line" lang="plaintext"> gatb-core | 4 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC88" class="line" lang="plaintext"> getdata | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC94" class="line" lang="plaintext"> hinge | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC95" class="line" lang="plaintext"> ipig | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC96" class="line" lang="plaintext"> jellyfish1 | 4 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC92" class="line" lang="plaintext"> libdivsufsort | 4 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC97" class="line" lang="plaintext"> librdp-taxonomy-tree-java | 4 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC98" class="line" lang="plaintext"> maffilter | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC99" class="line" lang="plaintext"> mauve-aligner | 4 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC96" class="line" lang="plaintext"> mhap | 4 | {bio-ngs,bio} | </span>
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<pre style="margin: 0;">-<span id="LC97" class="line" lang="plaintext"> mlv-smile | 4 | {bio,cloud} | </span>
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<pre style="margin: 0;"> <span id="LC100" class="line" lang="plaintext"> mrs | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC101" class="line" lang="plaintext"> murasaki | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC102" class="line" lang="plaintext"> nutsqlite | 4 | {tools} | </span>
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<pre style="margin: 0;"> <span id="LC103" class="line" lang="plaintext"> openslide | 4 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC104" class="line" lang="plaintext"> orthanc-mysql | 4 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC105" class="line" lang="plaintext"> orthanc-postgresql | 4 | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC104" class="line" lang="plaintext"> paraclu | 4 | {bio,cloud} | </span>
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<pre style="margin: 0;"> <span id="LC106" class="line" lang="plaintext"> perm | 4 | {cloud,bio} | </span>
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<pre style="margin: 0;"> <span id="LC107" class="line" lang="plaintext"> phast | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC108" class="line" lang="plaintext"> placnet | 4 | {bio} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -113,9 +114,9 @@ Last-Update: Thu, 25 Jun 2020 01:42:04 +0000</td>
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114
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<pre style="margin: 0;"> <span id="LC114" class="line" lang="plaintext"> rdp-classifier | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC115" class="line" lang="plaintext"> scythe | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC116" class="line" lang="plaintext"> segemehl | 4 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC116" class="line" lang="plaintext"> sickle | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC117" class="line" lang="plaintext"> surankco | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC118" class="line" lang="plaintext"> tracetuner | 4 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC119" class="line" lang="plaintext"> zalign | 4 | {bio,cloud} | </span>
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<pre style="margin: 0;"> <span id="LC120" class="line" lang="plaintext"> assemblytics | 3 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC121" class="line" lang="plaintext"> baitfisher | 3 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC122" class="line" lang="plaintext"> bandage | 3 | {bio} | </span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="148" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="149" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -148,6 +149,7 @@ Last-Update: Thu, 25 Jun 2020 01:42:04 +0000</td>
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<pre style="margin: 0;"> <span id="LC149" class="line" lang="plaintext"> mptp | 3 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC150" class="line" lang="plaintext"> nanook | 3 | {covid-19,bio} | </span>
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<pre style="margin: 0;"> <span id="LC151" class="line" lang="plaintext"> ngs-sdk | 3 | {bio-dev} | </span>
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<pre style="margin: 0;">+<span id="LC152" class="line" lang="plaintext"> pal2nal | 3 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC153" class="line" lang="plaintext"> patman | 3 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC154" class="line" lang="plaintext"> phipack | 3 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC155" class="line" lang="plaintext"> phybin | 3 | {bio} | </span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="173" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -173,7 +175,6 @@ Last-Update: Thu, 25 Jun 2020 01:42:04 +0000</td>
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<pre style="margin: 0;"> <span id="LC175" class="line" lang="plaintext"> sweed | 3 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC176" class="line" lang="plaintext"> tvc | 3 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC177" class="line" lang="plaintext"> yaha | 3 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC176" class="line" lang="plaintext"> zalign | 3 | {bio,cloud} | </span>
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<pre style="margin: 0;"> <span id="LC178" class="line" lang="plaintext"> biosig4c++ | 2 | {imaging-dev,physics} | </span>
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<pre style="margin: 0;"> <span id="LC179" class="line" lang="plaintext"> blasr | 2 | {bio,bio-ngs} | </span>
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180
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<pre style="margin: 0;"> <span id="LC180" class="line" lang="plaintext"> blimps | 2 | {bio} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -182,8 +183,9 @@ Last-Update: Thu, 25 Jun 2020 01:42:04 +0000</td>
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183
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<pre style="margin: 0;"> <span id="LC183" class="line" lang="plaintext"> emboss-explorer | 2 | {bio} | </span>
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183
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184
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<pre style="margin: 0;"> <span id="LC184" class="line" lang="plaintext"> libctapimkt | 2 | {practice} | </span>
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184
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185
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<pre style="margin: 0;"> <span id="LC185" class="line" lang="plaintext"> libsbml | 2 | {bio-dev} | </span>
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186
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<pre style="margin: 0;">+<span id="LC186" class="line" lang="plaintext"> multiqc | 2 | {covid-19,bio} | </span>
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187
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<pre style="margin: 0;">+<span id="LC187" class="line" lang="plaintext"> ncbi-vdb | 2 | {bio-dev} | </span>
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185
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188
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<pre style="margin: 0;"> <span id="LC188" class="line" lang="plaintext"> oscar | 2 | {data,tools,practice} | </span>
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186
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<pre style="margin: 0;">-<span id="LC186" class="line" lang="plaintext"> pal2nal | 2 | {bio} | </span>
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187
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189
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<pre style="margin: 0;"> <span id="LC189" class="line" lang="plaintext"> papyrus | 2 | {imaging-dev} | </span>
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188
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190
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<pre style="margin: 0;"> <span id="LC190" class="line" lang="plaintext"> pbdagcon | 2 | {bio} | </span>
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189
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191
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<pre style="margin: 0;"> <span id="LC191" class="line" lang="plaintext"> relion | 2 | {bio} | </span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="195" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -195,18 +197,20 @@ Last-Update: Thu, 25 Jun 2020 01:42:04 +0000</td>
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195
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197
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<pre style="margin: 0;"> <span id="LC197" class="line" lang="plaintext"> ctn | 1 | {imaging-dev} | </span>
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196
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<pre style="margin: 0;"> <span id="LC198" class="line" lang="plaintext"> cufflinks | 1 | {cloud,bio} | </span>
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<pre style="margin: 0;"> <span id="LC199" class="line" lang="plaintext"> gatb-core | 1 | {bio-dev} | </span>
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200
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<pre style="margin: 0;">+<span id="LC200" class="line" lang="plaintext"> htscodecs | 1 | {bio-dev,covid-19} | </span>
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198
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201
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<pre style="margin: 0;"> <span id="LC201" class="line" lang="plaintext"> libchado-perl | 1 | {bio-dev} | </span>
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202
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<pre style="margin: 0;">+<span id="LC202" class="line" lang="plaintext"> libmaus2 | 1 | {covid-19,bio-dev} | </span>
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199
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203
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<pre style="margin: 0;"> <span id="LC203" class="line" lang="plaintext"> libmialm | 1 | {imaging-dev} | </span>
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200
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204
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<pre style="margin: 0;"> <span id="LC204" class="line" lang="plaintext"> libvistaio | 1 | {imaging-dev} | </span>
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201
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205
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<pre style="margin: 0;"> <span id="LC205" class="line" lang="plaintext"> libxdf | 1 | {imaging-dev} | </span>
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202
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<pre style="margin: 0;">-<span id="LC202" class="line" lang="plaintext"> multiqc | 1 | {covid-19,bio} | </span>
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203
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<pre style="margin: 0;"> <span id="LC206" class="line" lang="plaintext"> murasaki | 1 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC204" class="line" lang="plaintext"> ncbi-vdb | 1 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC207" class="line" lang="plaintext"> opensurgsim | 1 | {imaging-dev} | </span>
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<pre style="margin: 0;">+<span id="LC208" class="line" lang="plaintext"> pbcopper | 1 | {bio-dev} | </span>
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209
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<pre style="margin: 0;"> <span id="LC209" class="line" lang="plaintext"> python-py2bit | 1 | {bio,bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC210" class="line" lang="plaintext"> python-scitrack | 1 | {covid-19} | </span>
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211
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<pre style="margin: 0;"> <span id="LC211" class="line" lang="plaintext"> q2templates | 1 | {bio} | </span>
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212
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<pre style="margin: 0;"> <span id="LC212" class="line" lang="plaintext"> relion | 1 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC213" class="line" lang="plaintext"> samtools-legacy | 1 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC214" class="line" lang="plaintext"> seqan | 1 | {bio-dev} | </span>
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215
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<pre style="margin: 0;"> <span id="LC215" class="line" lang="plaintext"> simpleitk | 1 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC216" class="line" lang="plaintext"> thesias | 1 | {covid-19,bio} | </span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="214" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="218" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -214,7 +218,6 @@ Last-Update: Thu, 25 Jun 2020 01:42:04 +0000</td>
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218
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<pre style="margin: 0;"> <span id="LC218" class="line" lang="plaintext"> volpack | 1 | {imaging-dev} | </span>
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219
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<pre style="margin: 0;"> <span id="LC219" class="line" lang="plaintext"> wtdbg2 | 1 | {covid-19} | </span>
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220
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<pre style="margin: 0;"> <span id="LC220" class="line" lang="plaintext"> acedb | 0 | {cloud,bio} | </span>
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<pre style="margin: 0;">-<span id="LC217" class="line" lang="plaintext"> augur | 0 | {covid-19,bio} | </span>
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<pre style="margin: 0;"> <span id="LC221" class="line" lang="plaintext"> bambamc | 0 | {bio-dev} | </span>
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222
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<pre style="margin: 0;"> <span id="LC222" class="line" lang="plaintext"> bbmap | 0 | {covid-19} | </span>
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223
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<pre style="margin: 0;"> <span id="LC223" class="line" lang="plaintext"> biojava4-live | 0 | {bio-dev} | </span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="223" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -223,7 +226,6 @@ Last-Update: Thu, 25 Jun 2020 01:42:04 +0000</td>
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<pre style="margin: 0;"> <span id="LC226" class="line" lang="plaintext"> camp | 0 | {imaging-dev} | </span>
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227
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<pre style="margin: 0;"> <span id="LC227" class="line" lang="plaintext"> emmax | 0 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC228" class="line" lang="plaintext"> fis-gtm | 0 | {his} | </span>
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<pre style="margin: 0;">-<span id="LC226" class="line" lang="plaintext"> htscodecs | 0 | {bio-dev,covid-19} | </span>
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<pre style="margin: 0;"> <span id="LC229" class="line" lang="plaintext"> kma | 0 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC230" class="line" lang="plaintext"> kmerresistance | 0 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC231" class="line" lang="plaintext"> libbigwig | 0 | {bio-dev} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -243,7 +245,6 @@ Last-Update: Thu, 25 Jun 2020 01:42:04 +0000</td>
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<pre style="margin: 0;"> <span id="LC245" class="line" lang="plaintext"> libhmsbeagle | 0 | {bio-dev} | </span>
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246
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<pre style="margin: 0;"> <span id="LC246" class="line" lang="plaintext"> libics | 0 | {imaging-dev,covid-19} | </span>
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247
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<pre style="margin: 0;"> <span id="LC247" class="line" lang="plaintext"> libjloda-java | 0 | {bio-dev} | </span>
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<pre style="margin: 0;">-<span id="LC246" class="line" lang="plaintext"> libmaus2 | 0 | {covid-19,bio-dev} | </span>
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248
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<pre style="margin: 0;"> <span id="LC248" class="line" lang="plaintext"> libmems | 0 | {bio-dev} | </span>
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249
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<pre style="margin: 0;"> <span id="LC249" class="line" lang="plaintext"> libmuscle | 0 | {bio-dev} | </span>
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250
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<pre style="margin: 0;"> <span id="LC250" class="line" lang="plaintext"> libncl | 0 | {bio-dev} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -260,14 +261,12 @@ Last-Update: Thu, 25 Jun 2020 01:42:04 +0000</td>
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261
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<pre style="margin: 0;"> <span id="LC261" class="line" lang="plaintext"> opencfu | 0 | {laboratory} | </span>
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261
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262
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<pre style="margin: 0;"> <span id="LC262" class="line" lang="plaintext"> orthanc-imagej | 0 | {imaging} | </span>
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263
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<pre style="margin: 0;"> <span id="LC263" class="line" lang="plaintext"> parallel-fastq-dump | 0 | {covid-19} | </span>
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<pre style="margin: 0;">-<span id="LC263" class="line" lang="plaintext"> pbcopper | 0 | {bio-dev} | </span>
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264
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<pre style="margin: 0;"> <span id="LC264" class="line" lang="plaintext"> pbseqlib | 0 | {bio-dev} | </span>
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265
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<pre style="margin: 0;"> <span id="LC265" class="line" lang="plaintext"> pilercr | 0 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC266" class="line" lang="plaintext"> quicktree | 0 | {covid-19,bio,bio-phylogeny} | </span>
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267
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<pre style="margin: 0;"> <span id="LC267" class="line" lang="plaintext"> relion | 0 | {bio} | </span>
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268
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268
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<pre style="margin: 0;"> <span id="LC268" class="line" lang="plaintext"> relion | 0 | {bio-dev} | </span>
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269
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269
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<pre style="margin: 0;"> <span id="LC269" class="line" lang="plaintext"> sambamba | 0 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC270" class="line" lang="plaintext"> samtools-legacy | 0 | {bio-dev} | </span>
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270
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<pre style="margin: 0;"> <span id="LC270" class="line" lang="plaintext"> sbmltoolbox | 0 | {bio-dev} | </span>
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271
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<pre style="margin: 0;"> <span id="LC271" class="line" lang="plaintext"> seq-gen | 0 | {bio} | </span>
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272
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<pre style="margin: 0;"> <span id="LC272" class="line" lang="plaintext"> skesa | 0 | {bio} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -280,6 +279,7 @@ Last-Update: Thu, 25 Jun 2020 01:42:04 +0000</td>
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279
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<pre style="margin: 0;"> <span id="LC279" class="line" lang="plaintext"> varna | 0 | {bio} | </span>
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280
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<pre style="margin: 0;"> <span id="LC280" class="line" lang="plaintext"> varscan | 0 | {bio,covid-19} | </span>
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281
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<pre style="margin: 0;"> <span id="LC281" class="line" lang="plaintext"> vtk-dicom | 0 | {imaging-dev} | </span>
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<pre style="margin: 0;">+<span id="LC282" class="line" lang="plaintext"> augur | -1 | {covid-19,bio} | </span>
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<pre style="margin: 0;"> <span id="LC283" class="line" lang="plaintext"> bustools | -1 | {bio,covid-19} | </span>
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<pre style="margin: 0;"> <span id="LC284" class="line" lang="plaintext"> mssstest | -1 | {tools} | </span>
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<pre style="margin: 0;"> <span id="LC285" class="line" lang="plaintext"> pycoqc | -1 | {covid-19,bio} | </span>
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