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GitLab
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<h3>
Steffen Möller pushed to branch master
at <a href="https://salsa.debian.org/med-team/rna-star">Debian Med / rna-star</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/rna-star/-/commit/87d2fc433559f94861336be70aa978b70be0831b">87d2fc43</a></strong>
<div>
<span>by Steffen Moeller</span>
<i>at 2020-06-27T17:10:17+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 2.7.5a+dfsg</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/rna-star/-/commit/4b0e652ac98655a392bdf3cc26eddd25bc2f07e7">4b0e652a</a></strong>
<div>
<span>by Steffen Moeller</span>
<i>at 2020-06-27T17:10:17+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: New upstream version
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/rna-star/-/commit/849b9b9146dc784fc764a553443173bf9c0655b7">849b9b91</a></strong>
<div>
<span>by Steffen Moeller</span>
<i>at 2020-06-27T17:10:18+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Update upstream source from tag 'upstream/2.7.5a+dfsg'
Update to upstream version '2.7.5a+dfsg'
with Debian dir 89686db20ebee91b1502794f2a099d9780456efe</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/rna-star/-/commit/f09a8cd56a2c215049b9cf14b3124a46130d295a">f09a8cd5</a></strong>
<div>
<span>by Steffen Moeller</span>
<i>at 2020-06-27T17:31:12+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version that sadly FTBFS
</pre>
</li>
</ul>
<h4>27 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#7facec255884dc55d3818e4dfbea89b1bdd7f49e">
CHANGES.md
</a>
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<li class="file-stats">
<a href="#8ec9a00bfd09b3190ac6b22251dbb1aa95a0579d">
README.md
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<li class="file-stats">
<a href="#fb1b39277cfb15327cea71551d0bbf7643e216f4">
RELEASEnotes.md
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<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
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<li class="file-stats">
<a href="#e15fe6a3aa4284cb8b1685bd77b426cd5fbd7737">
debian/patches/donotuse_own_htslib.patch
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<li class="file-stats">
<a href="#dff95bfe725929ee1dea7525100f4f6d09bd9ba6">
<span class="new-file">
+
debian/patches/mathRoutinesNotInScope.patch
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<li class="file-stats">
<a href="#76258ff6f1526200cf3fda90e9f37fd9ee4b4364">
debian/patches/reproducible.patch
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<li class="file-stats">
<a href="#bc34014ab4b9a49dd7a27bdd8d352912607c3a96">
debian/patches/series
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<li class="file-stats">
<a href="#1d6ebb42152a3125296c8f3df8bc34651da72448">
doc/STARmanual.pdf
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<li class="file-stats">
<a href="#0e92e2511c1a55ce1db2a846d4399f9fe68a71fe">
docs/STARsolo.md
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<li class="file-stats">
<a href="#5a5668ccb427693fe0e7ea2e054229206cb91b0a">
extras/doc-latex/STARmanual.tex
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<li class="file-stats">
<a href="#157cd6d9047e6c04e2c099a71f167a5214eba375">
extras/doc-latex/convertParDefToLatexTable.awk
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<li class="file-stats">
<a href="#dd357fd519066773532862e75ebb9276945c8fe5">
extras/doc-latex/parametersDefault.tex
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<li class="file-stats">
<a href="#8955c7301dc01c7f9b2a350f2aee6066e91f8f83">
extras/docker/Dockerfile
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<li class="file-stats">
<a href="#8931e77042e63c3b2542d1f9abf82ad32f935821">
extras/scripts/soloBasicCellFilter.awk
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<li class="file-stats">
<a href="#2ae4914dbcb1efeb17d11c457772c8c2308eb7c1">
source/BAMbinSortUnmapped.cpp
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<li class="file-stats">
<a href="#3ceff442a9e2d0cccb7493ea77170f2b33f3737a">
source/ChimericDetection.cpp
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<li class="file-stats">
<a href="#40b7d10e4645dc6ae30e5830f3b8abe35c537374">
source/ChimericDetection.h
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<li class="file-stats">
<a href="#165858b6de35f6f7c794dcfe8e28a97119310ec8">
source/ErrorWarning.cpp
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<li class="file-stats">
<a href="#91be571d30070624a6131ee976f3c342107c4696">
<span class="new-file">
+
source/GTF.cpp
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<li class="file-stats">
<a href="#6dff27ff5589a593da345e4793c13baa577c9801">
<span class="new-file">
+
source/GTF.h
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<li class="file-stats">
<a href="#0370b373da799266eced81a10877dac6ee50d7f3">
<span class="new-file">
+
source/GTF_superTranscript.cpp
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<li class="file-stats">
<a href="#f9b6ce4365fb948fbfeb192ecf1c9d66509b25f8">
source/loadGTF.cpp
→
source/GTF_transcriptGeneSJ.cpp
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</li>
<li class="file-stats">
<a href="#385d57a3ccf42a0b7462635b147b385a25e91797">
source/Genome.cpp
</a>
</li>
<li class="file-stats">
<a href="#3b3dcc63f931c5db1862b61467a733972f52de53">
source/Genome.h
</a>
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<li class="file-stats">
<a href="#df6e5318de1db41d7b70e60dc90b4554d8617517">
<span class="new-file">
+
source/Genome_consensusSequence.cpp
</span>
</a>
</li>
<li class="file-stats">
<a href="#f4eb1c9c89d8a6664c03d29afd21f3104689a8d9">
source/Genome_genomeGenerate.cpp
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</ul>
<h5>The diff was not included because it is too large.</h5>
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