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<h3>
Steffen Möller pushed to branch master
at <a href="https://salsa.debian.org/med-team/fieldbioinformatics">Debian Med / fieldbioinformatics</a>
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<h4>
Commits:
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<strong><a href="https://salsa.debian.org/med-team/fieldbioinformatics/-/commit/fd2f9978b7e101a599422609bb687a7f9e852046">fd2f9978</a></strong>
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<span>by Steffen Möller</span>
<i>at 2020-06-27T19:05:37+00:00</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Update control</pre>
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<h4>1 changed file:</h4>
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<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
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<h4>Changes:</h4>
<li id="58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
<a href="https://salsa.debian.org/med-team/fieldbioinformatics/-/commit/fd2f9978b7e101a599422609bb687a7f9e852046#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2"><strong>debian/control</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -3,7 +3,7 @@ Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.</td>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext">Uploaders: Malihe Asemani <ml.asemani@gmail.com></span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext">Section: science</span>
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="plaintext">Priority: optional</span>
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<pre style="margin: 0;">-<span id="LC6" class="line" lang="plaintext">Build-Depends: debhelper-compat (=1<span class="idiff left right">2</span>),</span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext">Build-Depends: debhelper-compat (=1<span class="idiff left right">3</span>),</span>
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="plaintext"> python3,</span>
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<pre style="margin: 0;"> <span id="LC8" class="line" lang="plaintext"> python3-setuptools,</span>
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="plaintext"> dh-python</span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="11" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="11" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -11,6 +11,7 @@ Standards-Version: 4.5.0</td>
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="plaintext">Vcs-Browser: https://salsa.debian.org/med-team/fieldbioinformatics</span>
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<pre style="margin: 0;"> <span id="LC12" class="line" lang="plaintext">Vcs-Git: https://salsa.debian.org/med-team/fieldbioinformatics.git</span>
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<pre style="margin: 0;"> <span id="LC13" class="line" lang="plaintext">Homepage: https://github.com/artic-network/fieldbioinformatics</span>
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="plaintext">Rules-Requires-Root: no</span>
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<pre style="margin: 0;"> <span id="LC15" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC16" class="line" lang="plaintext">Package: fieldbioinformatics</span>
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<pre style="margin: 0;"> <span id="LC17" class="line" lang="plaintext">Architecture: all</span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="25" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="26" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -25,22 +26,25 @@ Depends: ${python3:Depends},</td>
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<pre style="margin: 0;"> <span id="LC26" class="line" lang="plaintext"> python3-requests,</span>
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<pre style="margin: 0;"> <span id="LC27" class="line" lang="plaintext"> python3-seaborn,</span>
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<td class="diff-line-num new_line" data-linenumber="28" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC28" class="line" lang="plaintext"> python3-tqdm</span>
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<pre style="margin: 0;">-<span id="LC28" class="line" lang="plaintext">Description: pipeline <span class="idiff left right"> with virus sequencing data sequenced with nanopore</span></span>
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<td class="diff-line-num new old_line" data-linenumber="29" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC29" class="line" lang="plaintext">Description: pipeline <span class="idiff left right">with virus identification with Nanopore sequencer</span></span>
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<pre style="margin: 0;"> <span id="LC30" class="line" lang="plaintext"> This is the ARTIC bioinformatics pipeline for working with virus sequencing</span>
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<pre style="margin: 0;">-<span id="LC30" class="line" lang="plaintext"> data, sequenced with nanopore. <span class="idiff left right">Nanopore i</span>s a complete bioinformatics</span>
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<pre style="margin: 0;">-<span id="LC31" class="line" lang="plaintext"> protocol to take the output from the <span class="idiff left right">sequencing protocol to</span> consensus</span>
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<pre style="margin: 0;">+<span id="LC31" class="line" lang="plaintext"> data, sequenced with nanopore. <span class="idiff left right">It implement</span>s a complete bioinformatics</span>
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<pre style="margin: 0;">+<span id="LC32" class="line" lang="plaintext"> protocol to take the output from the <span class="idiff left right">Nanopore sequencer and determine</span> consensus</span>
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<pre style="margin: 0;"> <span id="LC33" class="line" lang="plaintext"> genome sequences. Includes basecalling, de-multiplexing, mapping, polishing</span>
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<pre style="margin: 0;"> <span id="LC34" class="line" lang="plaintext"> and consensus generation.</span>
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<pre style="margin: 0;">+<span id="LC35" class="line" lang="plaintext"> .</span>
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<pre style="margin: 0;">+<span id="LC36" class="line" lang="plaintext"> An outbreak of SARS-CoV-2, Ebola, ... something unknown? This</span>
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<pre style="margin: 0;">+<span id="LC37" class="line" lang="plaintext"> software is field-proven.</span>
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<pre style="margin: 0;"> <span id="LC38" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC39" class="line" lang="plaintext">Package: fieldbioinformatics-examples</span>
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<pre style="margin: 0;"> <span id="LC40" class="line" lang="plaintext">Architecture: all</span>
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<pre style="margin: 0;"> <span id="LC41" class="line" lang="plaintext">Depends: ${python3:Depends},</span>
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<pre style="margin: 0;"> <span id="LC42" class="line" lang="plaintext"> ${misc:Depends}</span>
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<pre style="margin: 0;"> <span id="LC43" class="line" lang="plaintext">Enhances: fieldbioinformatics</span>
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<pre style="margin: 0;">-<span id="LC40" class="line" lang="plaintext">Description: <span class="idiff left right">pipeline for virus sequencing data sequenced with nanopore (examples)</span></span>
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<pre style="margin: 0;">+<span id="LC44" class="line" lang="plaintext">Description: <span class="idiff left right">examples for virus identification pipeline for the Nanopore</span></span>
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<pre style="margin: 0;"> <span id="LC45" class="line" lang="plaintext"> This is the ARTIC bioinformatics pipeline for working with virus sequencing</span>
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<pre style="margin: 0;">-<span id="LC42" class="line" lang="plaintext"> data, sequenced with nanopore. <span class="idiff left right">Nanopore i</span>s a complete bioinformatics</span>
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<pre style="margin: 0;">-<span id="LC43" class="line" lang="plaintext"> protocol to take the output from the <span class="idiff left right">sequencing protocol to</span> consensus</span>
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<pre style="margin: 0;">+<span id="LC46" class="line" lang="plaintext"> data, sequenced with nanopore. <span class="idiff left right">It implement</span>s a complete bioinformatics</span>
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<pre style="margin: 0;">+<span id="LC47" class="line" lang="plaintext"> protocol to take the output from the <span class="idiff left right">Nanopore sequencer and determine</span> consensus</span>
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<pre style="margin: 0;"> <span id="LC48" class="line" lang="plaintext"> genome sequences. Includes basecalling, de-multiplexing, mapping, polishing</span>
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<pre style="margin: 0;"> <span id="LC49" class="line" lang="plaintext"> and consensus generation.</span>
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<pre style="margin: 0;"> <span id="LC50" class="line" lang="plaintext"> .</span>
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