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<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/med-team/nanook">Debian Med / nanook</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/nanook/-/commit/2877ff7a435f6a8af861e262487afd57f4017c5a">2877ff7a</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-06-28T08:33:12+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: Standards-Version: 4.5.0
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/nanook/-/commit/3761c74c7b23c002882cb85cbb2b5eea2a750d2b">3761c74c</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-06-28T08:33:13+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: debhelper-compat 13
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/nanook/-/commit/7f35893f25b4cbe7cc448b29969b934afaa3b84f">7f35893f</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-06-28T08:33:16+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: Add salsa-ci file
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/nanook/-/commit/1de426a096ca6fbde3b2ced3a5af20a6fb7965b1">1de426a0</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-06-28T08:33:16+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: Rules-Requires-Root: no
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/nanook/-/commit/dd8e7d26142bec9913aa36a6ff999222f4a28b8f">dd8e7d26</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-06-28T08:33:20+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Set upstream metadata fields: Repository, Repository-Browse.
Fixes: lintian: upstream-metadata-missing-repository
See-also: https://lintian.debian.org/tags/upstream-metadata-missing-repository.html
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/nanook/-/commit/b9993c49f187216eca479fa29fe4e8a7a6b1b724">b9993c49</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-06-28T08:36:12+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Add debian/source/include-binaries
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/nanook/-/commit/c7836854f07b28f4578afcfbe3d2a2efe5a0a61b">c7836854</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-06-28T10:41:36+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Provide test data in extra examples package to not bloat user machines to much
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/nanook/-/commit/32ae9fdac441729084a257199b1424ca7b57dcd5">32ae9fda</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-06-28T11:01:53+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Add Bug-Submit and upload to unstable
</pre>
</li>
</ul>
<h4>14 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#f6a99a1e522a0f5ca122fd9818a9d8536ea59942">
debian/README.test
</a>
</li>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
</a>
</li>
<li class="file-stats">
<a href="#78fd675df1cf8c2d4c62ae1a9a912d15c8c50ba4">
<span class="deleted-file">
−
debian/compat
</span>
</a>
</li>
<li class="file-stats">
<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
</a>
</li>
<li class="file-stats">
<a href="#9a14945e16c9144bd18a7ed182b1f8e4a2b50d7c">
<span class="deleted-file">
−
debian/examples
</span>
</a>
</li>
<li class="file-stats">
<a href="#191bc192c9782df3e6f9c9b5bfe9192af05d3e87">
<span class="new-file">
+
debian/nanook-examples.install
</span>
</a>
</li>
<li class="file-stats">
<a href="#c922ee068c15fb43909321d20711a2509b246d61">
debian/docs
→
debian/nanook.docs
</a>
</li>
<li class="file-stats">
<a href="#cee9cc8ca4e2a3088b104f5c917c9c47a103a9b4">
debian/install
→
debian/nanook.install
</a>
</li>
<li class="file-stats">
<a href="#d96d5af6f8ccedf2df05629c9128c173d2cb39a1">
debian/jlibs
→
debian/nanook.jlibs
</a>
</li>
<li class="file-stats">
<a href="#2d7cf301ca19d444c43465e7e4f5c9d729ef3b57">
debian/links
→
debian/nanook.links
</a>
</li>
<li class="file-stats">
<a href="#a70816fa000aabe12961192429ccbdeb4ca7abf3">
debian/manpages
→
debian/nanook.manpages
</a>
</li>
<li class="file-stats">
<a href="#b1dbf22e88351ec0d5d1d1a7f53295504b480e61">
<span class="new-file">
+
debian/salsa-ci.yml
</span>
</a>
</li>
<li class="file-stats">
<a href="#d0b2adb0358f0eab7dd3bb1849dd4e795a81f242">
<span class="new-file">
+
debian/source/include-binaries
</span>
</a>
</li>
<li class="file-stats">
<a href="#f5606a935d95a2f20059a7ac1136f47b2edadbf6">
debian/upstream/metadata
</a>
</li>
</ul>
<h4>Changes:</h4>
<li id="f6a99a1e522a0f5ca122fd9818a9d8536ea59942">
<a href="https://salsa.debian.org/med-team/nanook/-/compare/a76719c53704128eb1d149d16c857844a5be8490...32ae9fdac441729084a257199b1424ca7b57dcd5#f6a99a1e522a0f5ca122fd9818a9d8536ea59942"><strong>debian/README.test</strong></a>
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<td class="diff-line-num unfold js-unfold new_line" data-linenumber="3" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -3,6 +3,7 @@ Notes on how this package can be tested.</td>
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3
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<td class="diff-line-num new_line" data-linenumber="3" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
3
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<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC3" class="line" lang="php"></span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="4" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="diff-line-num new_line" data-linenumber="4" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC4" class="line" lang="php"><span class="nx">This</span> <span class="nx">package</span> <span class="nx">can</span> <span class="nx">be</span> <span class="nx">tested</span> <span class="nx">by</span> <span class="nx">running</span> <span class="nx">the</span> <span class="nx">provided</span> <span class="nx">test</span><span class="o" style="font-weight: 600;">:</span></span>
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<td class="diff-line-num new_line" data-linenumber="5" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
5
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<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC5" class="line" lang="php"></span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="6" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="6" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
6
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<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC6" class="line" lang="php"> <span class="nx">sudo</span> <span class="nx">apt</span> <span class="nx">install</span> <span class="nx">nanook</span><span class="o" style="font-weight: 600;">-</span><span class="nx">examples</span></span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="6" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="diff-line-num new_line" data-linenumber="7" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
7
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<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC7" class="line" lang="php"> <span class="nx">sh</span> <span class="nx">run</span><span class="o" style="font-weight: 600;">-</span><span class="nx">unit</span><span class="o" style="font-weight: 600;">-</span><span class="nx">test</span></span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="7" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="diff-line-num new_line" data-linenumber="8" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
8
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<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC8" class="line" lang="php"></span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="8" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="diff-line-num new_line" data-linenumber="9" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC9" class="line" lang="php"><span class="nx">in</span> <span class="nx">order</span> <span class="nx">to</span> <span class="nx">confirm</span> <span class="nx">its</span> <span class="nx">integrity</span><span class="o" style="font-weight: 600;">.</span></span></pre>
</td>
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<br>
</li>
<li id="9c96da0e9f91d7d8937b69b524702c106258f0d1">
<a href="https://salsa.debian.org/med-team/nanook/-/compare/a76719c53704128eb1d149d16c857844a5be8490...32ae9fdac441729084a257199b1424ca7b57dcd5#9c96da0e9f91d7d8937b69b524702c106258f0d1"><strong>debian/changelog</strong></a>
<hr>
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1
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<td class="diff-line-num new_line old" data-linenumber="1" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="plaintext">nanook (1.33+dfsg-2) UNRELEASED; urgency=medium</span>
</pre>
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1
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">nanook (1.33+dfsg-2) unstable; urgency=medium</span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="plaintext"></span>
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<td class="diff-line-num new new_line" data-linenumber="3" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext"> * Team upload</span>
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<td class="diff-line-num new_line" data-linenumber="4" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext"></span>
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<td class="diff-line-num new_line" data-linenumber="5" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC5" class="line" lang="plaintext"> [ Hervé Ménager ]</span>
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<td class="diff-line-num new_line" data-linenumber="6" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="plaintext"> * correct bio.tools and scicrunch refs</span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="11" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="13" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -11,6 +13,16 @@ nanook (1.33+dfsg-2) UNRELEASED; urgency=medium</td>
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<pre style="margin: 0;"> <span id="LC13" class="line" lang="plaintext"> * Add autopkgtests</span>
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12
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<pre style="margin: 0;"> <span id="LC14" class="line" lang="plaintext"> * Install docs</span>
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13
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15
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<pre style="margin: 0;"> <span id="LC15" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="plaintext"> [ Andreas Tille ]</span>
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17
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="plaintext"> * Standards-Version: 4.5.0 (routine-update)</span>
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18
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<pre style="margin: 0;">+<span id="LC18" class="line" lang="plaintext"> * debhelper-compat 13 (routine-update)</span>
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19
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="plaintext"> * Add salsa-ci file (routine-update)</span>
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<pre style="margin: 0;">+<span id="LC20" class="line" lang="plaintext"> * Rules-Requires-Root: no (routine-update)</span>
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<pre style="margin: 0;">+<span id="LC21" class="line" lang="plaintext"> * Set upstream metadata fields: Repository, Repository-Browse.</span>
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<pre style="margin: 0;">+<span id="LC22" class="line" lang="plaintext"> * debian/source/include-binaries</span>
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<pre style="margin: 0;">+<span id="LC23" class="line" lang="plaintext"> * Provide test data in extra examples package to not bloat user</span>
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<pre style="margin: 0;">+<span id="LC24" class="line" lang="plaintext"> machines to much</span>
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<pre style="margin: 0;">+<span id="LC25" class="line" lang="plaintext"></span>
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14
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<pre style="margin: 0;"> <span id="LC26" class="line" lang="plaintext"> -- Pranav Ballaney <ballaneypranav@gmail.com> Sun, 28 Jun 2020 04:53:32 +0530</span>
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<pre style="margin: 0;"> <span id="LC27" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC28" class="line" lang="plaintext">nanook (1.33+dfsg-1) unstable; urgency=medium</span>
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<a href="https://salsa.debian.org/med-team/nanook/-/compare/a76719c53704128eb1d149d16c857844a5be8490...32ae9fdac441729084a257199b1424ca7b57dcd5#78fd675df1cf8c2d4c62ae1a9a912d15c8c50ba4"><strong>debian/compat</strong>
deleted
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1
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="plaintext">11</span></pre>
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<a href="https://salsa.debian.org/med-team/nanook/-/compare/a76719c53704128eb1d149d16c857844a5be8490...32ae9fdac441729084a257199b1424ca7b57dcd5#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2"><strong>debian/control</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -3,14 +3,15 @@ Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.</td>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext">Uploaders: Andreas Tille <tille@debian.org></span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext">Section: science</span>
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5
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="plaintext">Priority: optional</span>
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<pre style="margin: 0;">-<span id="LC6" class="line" lang="plaintext">Build-Depends: debhelper<span class="idiff left right"> (>= 11~</span>),</span>
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6
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext">Build-Depends: debhelper<span class="idiff left right">-compat (= 13</span>),</span>
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="plaintext"> default-jdk,</span>
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<pre style="margin: 0;"> <span id="LC8" class="line" lang="plaintext"> javahelper,</span>
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="plaintext"> libcommons-io-java</span>
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<pre style="margin: 0;">-<span id="LC10" class="line" lang="plaintext">Standards-Version: 4.<span class="idiff left right">2.1</span></span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="plaintext">Standards-Version: 4.<span class="idiff left right">5.0</span></span>
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="plaintext">Vcs-Browser: https://salsa.debian.org/med-team/nanook</span>
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<pre style="margin: 0;"> <span id="LC12" class="line" lang="plaintext">Vcs-Git: https://salsa.debian.org/med-team/nanook.git</span>
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<pre style="margin: 0;"> <span id="LC13" class="line" lang="plaintext">Homepage: https://documentation.tgac.ac.uk/display/NANOOK/NanoOK</span>
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="plaintext">Rules-Requires-Root: no</span>
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<pre style="margin: 0;"> <span id="LC15" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC16" class="line" lang="plaintext">Package: nanook</span>
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<pre style="margin: 0;"> <span id="LC17" class="line" lang="plaintext">Architecture: all</span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="39" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -39,3 +40,22 @@ Description: pre- and post-alignment analysis of nanopore sequencing data</td>
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<pre style="margin: 0;"> <span id="LC40" class="line" lang="plaintext"> quality analysis. Along the way, it generates plain text files which can</span>
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<pre style="margin: 0;"> <span id="LC41" class="line" lang="plaintext"> be used for further analysis, as well as graphs suitable for inclusion</span>
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<pre style="margin: 0;"> <span id="LC42" class="line" lang="plaintext"> in presentations and papers.</span>
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<pre style="margin: 0;">+<span id="LC43" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC44" class="line" lang="plaintext">Package: nanook-examples</span>
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<pre style="margin: 0;">+<span id="LC45" class="line" lang="plaintext">Architecture: all</span>
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<pre style="margin: 0;">+<span id="LC46" class="line" lang="plaintext">Depends: ${misc:Depends},</span>
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<pre style="margin: 0;">+<span id="LC47" class="line" lang="plaintext">Enhances: nanook</span>
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<pre style="margin: 0;">+<span id="LC48" class="line" lang="plaintext">Description: pre- and post-alignment analysis of nanopore sequencing data (examples)</span>
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<pre style="margin: 0;">+<span id="LC49" class="line" lang="plaintext"> NanoOK is a flexible, multi-reference software for pre- and post-</span>
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<pre style="margin: 0;">+<span id="LC50" class="line" lang="plaintext"> alignment analysis of nanopore sequencing data, quality and error</span>
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<pre style="margin: 0;">+<span id="LC51" class="line" lang="plaintext"> profiles.</span>
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<pre style="margin: 0;">+<span id="LC52" class="line" lang="plaintext"> .</span>
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<pre style="margin: 0;">+<span id="LC53" class="line" lang="plaintext"> NanoOK (pronounced na-nook) is a tool for extraction, alignment and</span>
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<pre style="margin: 0;">+<span id="LC54" class="line" lang="plaintext"> analysis of Nanopore reads. NanoOK will extract reads as FASTA or FASTQ</span>
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<pre style="margin: 0;">+<span id="LC55" class="line" lang="plaintext"> files, align them (with a choice of alignment tools), then generate a</span>
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<pre style="margin: 0;">+<span id="LC56" class="line" lang="plaintext"> comprehensive multi-page PDF report containing yield, accuracy and</span>
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<pre style="margin: 0;">+<span id="LC57" class="line" lang="plaintext"> quality analysis. Along the way, it generates plain text files which can</span>
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<pre style="margin: 0;">+<span id="LC58" class="line" lang="plaintext"> be used for further analysis, as well as graphs suitable for inclusion</span>
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<pre style="margin: 0;">+<span id="LC59" class="line" lang="plaintext"> in presentations and papers.</span>
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<pre style="margin: 0;">+<span id="LC60" class="line" lang="plaintext"> .</span>
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<pre style="margin: 0;">+<span id="LC61" class="line" lang="plaintext"> This package contains some example data.</span></pre>
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<a href="https://salsa.debian.org/med-team/nanook/-/compare/a76719c53704128eb1d149d16c857844a5be8490...32ae9fdac441729084a257199b1424ca7b57dcd5#9a14945e16c9144bd18a7ed182b1f8e4a2b50d7c"><strong>debian/examples</strong>
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="plaintext">debian/tests/*</span></pre>
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<a href="https://salsa.debian.org/med-team/nanook/-/compare/a76719c53704128eb1d149d16c857844a5be8490...32ae9fdac441729084a257199b1424ca7b57dcd5#191bc192c9782df3e6f9c9b5bfe9192af05d3e87"><strong>debian/nanook-examples.install</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="php"><span class="nx">debian</span><span class="o" style="font-weight: 600;">/</span><span class="nx">tests</span><span class="o" style="font-weight: 600;">/*</span> <span class="nx">usr</span><span class="o" style="font-weight: 600;">/</span><span class="nx">share</span><span class="o" style="font-weight: 600;">/</span><span class="nx">doc</span><span class="o" style="font-weight: 600;">/</span><span class="nx">nanook</span><span class="o" style="font-weight: 600;">/</span><span class="nx">examples</span></span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="php"><span class="nx">debian</span><span class="o" style="font-weight: 600;">/</span><span class="nx">tests</span><span class="o" style="font-weight: 600;">/</span><span class="nx">run</span><span class="o" style="font-weight: 600;">-</span><span class="nx">unit</span><span class="o" style="font-weight: 600;">-</span><span class="nx">test</span> <span class="nx">usr</span><span class="o" style="font-weight: 600;">/</span><span class="nx">share</span><span class="o" style="font-weight: 600;">/</span><span class="nx">doc</span><span class="o" style="font-weight: 600;">/</span><span class="nx">nanook</span><span class="o" style="font-weight: 600;">/</span></span></pre>
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<pre style="margin: 0;"> <span id="LC1" class="line" lang="plaintext">README.md</span>
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="plaintext">debian/README*</span></pre>
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<pre style="margin: 0;">-<span id="LC3" class="line" lang="plaintext">debian/tests/run-unit-test</span>
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<pre style="margin: 0;">-<span id="LC4" class="line" lang="plaintext">debian/tests/README*</span></pre>
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<a href="https://salsa.debian.org/med-team/nanook/-/compare/a76719c53704128eb1d149d16c857844a5be8490...32ae9fdac441729084a257199b1424ca7b57dcd5#cee9cc8ca4e2a3088b104f5c917c9c47a103a9b4"><strong>debian/install</strong>
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<a href="https://salsa.debian.org/med-team/nanook/-/compare/a76719c53704128eb1d149d16c857844a5be8490...32ae9fdac441729084a257199b1424ca7b57dcd5#b1dbf22e88351ec0d5d1d1a7f53295504b480e61"><strong>debian/salsa-ci.yml</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="yaml"><span class="nn" style="color: #555;">---</span></span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="yaml"><span class="na" style="color: #008080;">include</span><span class="pi">:</span></span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="yaml"> <span class="pi">-</span> <span class="s" style="color: #d14;">https://salsa.debian.org/salsa-ci-team/pipeline/raw/master/salsa-ci.yml</span></span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="yaml"> <span class="pi">-</span> <span class="s" style="color: #d14;">https://salsa.debian.org/salsa-ci-team/pipeline/raw/master/pipeline-jobs.yml</span></span></pre>
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<a href="https://salsa.debian.org/med-team/nanook/-/compare/a76719c53704128eb1d149d16c857844a5be8490...32ae9fdac441729084a257199b1424ca7b57dcd5#d0b2adb0358f0eab7dd3bb1849dd4e795a81f242"><strong>debian/source/include-binaries</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">debian/tests/data.tar.gz</span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="plaintext">debian/tests/ref.tar.gz</span></pre>
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<a href="https://salsa.debian.org/med-team/nanook/-/compare/a76719c53704128eb1d149d16c857844a5be8490...32ae9fdac441729084a257199b1424ca7b57dcd5#f5606a935d95a2f20059a7ac1136f47b2edadbf6"><strong>debian/upstream/metadata</strong></a>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="23" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -23,3 +23,6 @@ Registry:</td>
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<pre style="margin: 0;"> <span id="LC23" class="line" lang="plaintext"> Entry: OMICS_09997</span>
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<pre style="margin: 0;"> <span id="LC24" class="line" lang="plaintext"> - Name: conda:bioconda</span>
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<pre style="margin: 0;"> <span id="LC25" class="line" lang="plaintext"> Entry: NA</span>
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<pre style="margin: 0;">+<span id="LC26" class="line" lang="plaintext">Repository: https://github.com/TGAC/NanoOK.git</span>
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<pre style="margin: 0;">+<span id="LC27" class="line" lang="plaintext">Repository-Browse: https://github.com/TGAC/NanoOK</span>
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<pre style="margin: 0;">+<span id="LC28" class="line" lang="plaintext">Bug-Submit: richard.leggett@earlham.ac.uk</span></pre>
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