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<h3>
Shayan Doust pushed to branch master
at <a href="https://salsa.debian.org/med-team/dextractor">Debian Med / dextractor</a>
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<h4>
Commits:
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<strong><a href="https://salsa.debian.org/med-team/dextractor/-/commit/6e52047edf350da1d781ad389b57122dc6b2cd8f">6e52047e</a></strong>
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<span>by Shayan Doust</span>
<i>at 2020-06-29T16:17:12+01:00</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Patch to use system-wide libhdf5-dev
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<h4>2 changed files:</h4>
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<a href="#bc34014ab4b9a49dd7a27bdd8d352912607c3a96">
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+
debian/patches/series
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debian/patches/use_system_packaged_libhdf5-dev.patch
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<h4>Changes:</h4>
<li id="bc34014ab4b9a49dd7a27bdd8d352912607c3a96">
<a href="https://salsa.debian.org/med-team/dextractor/-/commit/6e52047edf350da1d781ad389b57122dc6b2cd8f#bc34014ab4b9a49dd7a27bdd8d352912607c3a96"><strong>debian/patches/series</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">use_system_packaged_libhdf5-dev.patch</span></pre>
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<li id="19241dfe32fd0167992b3fe33ac0a8724f0b0213">
<a href="https://salsa.debian.org/med-team/dextractor/-/commit/6e52047edf350da1d781ad389b57122dc6b2cd8f#19241dfe32fd0167992b3fe33ac0a8724f0b0213"><strong>debian/patches/use_system_packaged_libhdf5-dev.patch</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="diff"><span class="p">Description: use libhdf5-dev prepackaged library</span></span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="diff"> Additionally, place the built binaries into bin/ for further dh installation.</span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="diff"><span class="p">Author: Shayan Doust <hello@shayandoust.me> </span></span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="diff"><span class="p">Last-Update: 2020-06-29</span></span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="diff"><span class="p">---</span></span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="diff"></span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="diff">--- dextractor.orig/Makefile</span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ dextractor/Makefile</span></span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="diff"><span class="p">@@ -1,11 +1,10 @@</span></span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-PATH_HDF5 = /sw/apps/hdf5/current</span></span>
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-PATH_HDF5 = /usr/local/hdf5</span></span>
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="diff"> CFLAGS = -O3 -Wall -Wextra -fno-strict-aliasing</span>
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+MACHINE_ARCH := $(shell echo `uname -m`)</span></span>
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="diff"> </span>
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="diff"> all: dextract dexta undexta dexqv undexqv</span>
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<td class="diff-line-num new new_line" data-linenumber="16" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="diff"> </span>
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<td class="diff-line-num new new_line" data-linenumber="17" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="diff"> dextract: dextract.c DB.c DB.h QV.c QV.h</span>
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<pre style="margin: 0;">+<span id="LC18" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- gcc $(CFLAGS) -I$(PATH_HDF5)/include -L$(PATH_HDF5)/lib -o dextract dextract.c DB.c QV.c -lhdf5</span></span>
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ gcc $(CFLAGS) -I/usr/include/hdf5/serial/ -L/usr/lib/${MACHINE_ARCH}-linux-gnu/hdf5/serial/ -o dextract dextract.c DB.c QV.c -lhdf5</span></span>
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<pre style="margin: 0;">+<span id="LC20" class="line" lang="diff"> </span>
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<pre style="margin: 0;">+<span id="LC21" class="line" lang="diff"> dexta: dexta.c DB.c DB.h QV.c QV.h</span>
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<pre style="margin: 0;">+<span id="LC22" class="line" lang="diff"> gcc $(CFLAGS) -o dexta dexta.c DB.c QV.c</span>
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<pre style="margin: 0;">+<span id="LC23" class="line" lang="diff"><span class="p">@@ -25,7 +24,8 @@</span></span>
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<pre style="margin: 0;">+<span id="LC24" class="line" lang="diff"> rm -f dextract.tar.gz</span>
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<pre style="margin: 0;">+<span id="LC25" class="line" lang="diff"> </span>
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<pre style="margin: 0;">+<span id="LC26" class="line" lang="diff"> install:</span>
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<pre style="margin: 0;">+<span id="LC27" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- cp dextract dexta undexta dexqv undexqv ~/bin</span></span>
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<pre style="margin: 0;">+<span id="LC28" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ mkdir bin/</span></span>
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<pre style="margin: 0;">+<span id="LC29" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ cp dextract dexta undexta dexqv undexqv bin/</span></span>
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<pre style="margin: 0;">+<span id="LC30" class="line" lang="diff"> </span>
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<pre style="margin: 0;">+<span id="LC31" class="line" lang="diff"> package:</span>
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<pre style="margin: 0;">+<span id="LC32" class="line" lang="diff"> make clean</span></pre>
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