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<h3>
Shayan Doust pushed to branch master
at <a href="https://salsa.debian.org/med-team/mecat2">Debian Med / mecat2</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/mecat2/-/commit/24891165474a64fc2a1472fdb7a5917f65e9bd43">24891165</a></strong>
<div>
<span>by Shayan Doust</span>
<i>at 2020-06-29T20:50:11+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Update patches - no longer need DEXTRACTOR
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/mecat2/-/commit/5c72ccdbaed16d950198394a762d03d6adf1e125">5c72ccdb</a></strong>
<div>
<span>by Shayan Doust</span>
<i>at 2020-06-29T20:50:30+01:00</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Remove DEXTRACTOR/
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<h4>4 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
</a>
</li>
<li class="file-stats">
<a href="#adb7f75f79e3bb85eb62912a2904c5d24af878fb">
debian/copyright
</a>
</li>
<li class="file-stats">
<a href="#2e4d533ed91ff2bdcbdda6e11ae04b4344247f05">
debian/patches/use_system_packaged_libs.patch
→
debian/patches/modify_makefiles.patch
</a>
</li>
<li class="file-stats">
<a href="#bc34014ab4b9a49dd7a27bdd8d352912607c3a96">
debian/patches/series
</a>
</li>
</ul>
<h4>Changes:</h4>
<li id="58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
<a href="https://salsa.debian.org/med-team/mecat2/-/compare/8f0dfd5186810bf3d85ee5cccd4cd0a58f92415e...5c72ccdbaed16d950198394a762d03d6adf1e125#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2"><strong>debian/control</strong></a>
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<td class="diff-line-num unfold js-unfold new_line" data-linenumber="4" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -4,7 +4,6 @@ Uploaders: Shayan Doust <hello@shayandoust.me></td>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext">Section: science</span>
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<td class="diff-line-num new_line" data-linenumber="5" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="plaintext">Priority: optional</span>
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<td class="diff-line-num new_line" data-linenumber="6" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="plaintext">Build-Depends: debhelper-compat (= 13),</span>
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<td class="diff-line-num new_line old" data-linenumber="7" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC7" class="line" lang="plaintext"> libhdf5-dev,</span>
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<td class="diff-line-num old_line" data-linenumber="8" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="diff-line-num new_line" data-linenumber="7" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC7" class="line" lang="plaintext"> zlib1g-dev</span>
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<td class="diff-line-num old_line" data-linenumber="9" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="diff-line-num new_line" data-linenumber="8" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC8" class="line" lang="plaintext">Standards-Version: 4.5.0</span>
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<td class="diff-line-num new_line" data-linenumber="9" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="plaintext">Vcs-Browser: https://salsa.debian.org/med-team/mecat2</span>
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<li id="adb7f75f79e3bb85eb62912a2904c5d24af878fb">
<a href="https://salsa.debian.org/med-team/mecat2/-/compare/8f0dfd5186810bf3d85ee5cccd4cd0a58f92415e...5c72ccdbaed16d950198394a762d03d6adf1e125#adb7f75f79e3bb85eb62912a2904c5d24af878fb"><strong>debian/copyright</strong></a>
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<pre style="margin: 0;"> <span id="LC1" class="line" lang="plaintext">Format: https://www.debian.org/doc/packaging-manuals/copyright-format/1.0/</span>
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="plaintext">Upstream-Name: mecat2</span>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext">Source: https://github.com/xiaochuanle/MECAT2</span>
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<pre style="margin: 0;">-<span id="LC4" class="line" lang="plaintext">Files-Excluded: third_party/hdf5-1.10.4.tar.gz </span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="plaintext">Files-Excluded: third_party/hdf5-1.10.4.tar.gz</span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext"> DEXTRACTOR/*</span>
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="plaintext">Comment:</span>
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<td class="diff-line-num new_line" data-linenumber="7" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="plaintext"> The hdf5-1.10.4.tar.gz file in third_party/ was removed as this </span>
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<pre style="margin: 0;">-<span id="LC7" class="line" lang="plaintext"> already exists within the debian repository pre-packaged</span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext"> already exists within the debian repository pre-packaged. DEXTRACTOR </span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="plaintext"> is packaged separately.</span>
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="plaintext">Files: *</span>
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<pre style="margin: 0;"> <span id="LC12" class="line" lang="plaintext">Copyright: 20xx-20yy <upstream></span>
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<li id="2e4d533ed91ff2bdcbdda6e11ae04b4344247f05">
<a href="https://salsa.debian.org/med-team/mecat2/-/compare/8f0dfd5186810bf3d85ee5cccd4cd0a58f92415e...5c72ccdbaed16d950198394a762d03d6adf1e125#2e4d533ed91ff2bdcbdda6e11ae04b4344247f05"><strong>debian/patches/use_system_packaged_libs.patch</strong>
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<strong>debian/patches/modify_makefiles.patch</strong>
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="diff"><span class="p">Description: <span class="idiff left right">use libraries that are already pre-packaged in Debian</span></span></span>
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<pre style="margin: 0;">-<span id="LC2" class="line" lang="diff"> <span class="idiff left right">Modify the Makefiles so that we instead use libraries that are already within Debian as a package, and not one in some third_party/ directory to build (removed)</span>.</span>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="diff"><span class="p">Description: <span class="idiff left right">remove the need for using DEXTRACTOR</span></span></span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="diff"> <span class="idiff left right">This is packaged separately</span>.</span>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="diff"><span class="p">Author: Shayan Doust <hello@shayandoust.me> </span></span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="diff"><span class="p">Last-Update: 2020-06-29</span></span>
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="diff"><span class="p">---</span></span>
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="diff"></span>
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="diff">--- mecat2.orig/Makefile</span>
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<pre style="margin: 0;"> <span id="LC8" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ mecat2/Makefile</span></span>
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<pre style="margin: 0;">-<span id="LC9" class="line" lang="diff"><span class="p">@@ -1,6 +1,7 @@</span></span>
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<pre style="margin: 0;">-<span id="LC10" class="line" lang="diff"> PWD := $(shell pwd)</span>
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<pre style="margin: 0;">-<span id="LC11" class="line" lang="diff"> OS_TYPE := $(shell echo `uname`)</span>
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<pre style="margin: 0;">-<span id="LC12" class="line" lang="diff"> MACHINE_TYPE := $(shell echo `uname -m`)</span>
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<pre style="margin: 0;">-<span id="LC13" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+MACHINE_TYPE_2 := $(shell echo `uname -m`)</span></span>
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<pre style="margin: 0;">-<span id="LC14" class="line" lang="diff"> ifeq (${MACHINE_TYPE}, x86_64)</span>
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<pre style="margin: 0;">-<span id="LC15" class="line" lang="diff"> MACHINE_TYPE = amd64</span>
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<pre style="margin: 0;">-<span id="LC16" class="line" lang="diff"> endif</span>
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<pre style="margin: 0;">-<span id="LC17" class="line" lang="diff"><span class="p">@@ -8,13 +9,6 @@</span></span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="diff"><span class="p">@@ -8,47 +8,13 @@</span></span>
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="diff"> </span>
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="diff"> BUILD_TOP_DIR := ${PWD}/${OS_TYPE}-${MACHINE_TYPE}</span>
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<pre style="margin: 0;"> <span id="LC12" class="line" lang="diff"> </span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="24" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -24,26 +16,33 @@ Last-Update: 2020-06-29</td>
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<pre style="margin: 0;"> <span id="LC16" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-HDF5_INCLUDE = ${HDF5_INSTALL}/include</span></span>
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<pre style="margin: 0;"> <span id="LC17" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-HDF5_LIB = ${HDF5_INSTALL}/lib/libhdf5.a</span></span>
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<pre style="margin: 0;"> <span id="LC18" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-HDF5_TAR_GZ = ${BUILD_TOP_DIR}/hdf5-$(HDF5_VERSION).tar.gz</span></span>
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+.PHONY: all clean mecat</span></span>
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<pre style="margin: 0;">+<span id="LC20" class="line" lang="diff"> </span>
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<pre style="margin: 0;">+<span id="LC21" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-DEXTRACTOR_BIN_NAME = dexqv dexta dextract undexqv undexta</span></span>
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<pre style="margin: 0;">+<span id="LC22" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-DEXTRACTOR_BIN = $(patsubst %, ${BUILD_DIR}/%, $(DEXTRACTOR_BIN_NAME))</span></span>
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<pre style="margin: 0;">+<span id="LC23" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-</span></span>
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<pre style="margin: 0;">+<span id="LC24" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-.PHONY: all clean mecat dextractor</span></span>
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<pre style="margin: 0;"> <span id="LC25" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-</span></span>
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<pre style="margin: 0;">-<span id="LC28" class="line" lang="diff"> DEXTRACTOR_BIN_NAME = dexqv dexta dextract undexqv undexta</span>
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<pre style="margin: 0;">-<span id="LC29" class="line" lang="diff"> DEXTRACTOR_BIN = $(patsubst %, ${BUILD_DIR}/%, $(DEXTRACTOR_BIN_NAME))</span>
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<pre style="margin: 0;">+<span id="LC26" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-all: mecat dextractor</span></span>
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<pre style="margin: 0;">+<span id="LC27" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+all: mecat</span></span>
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<pre style="margin: 0;">+<span id="LC28" class="line" lang="diff"> </span>
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<pre style="margin: 0;">+<span id="LC29" class="line" lang="diff"> mecat:</span>
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<pre style="margin: 0;">+<span id="LC30" class="line" lang="diff"> cd src && make</span>
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<pre style="margin: 0;"> <span id="LC31" class="line" lang="diff"> </span>
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<pre style="margin: 0;">-<span id="LC31" class="line" lang="diff"><span class="p">@@ -28,8 +22,6 @@</span></span>
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<pre style="margin: 0;"> <span id="LC32" class="line" lang="diff"> clean:</span>
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<pre style="margin: 0;"> <span id="LC33" class="line" lang="diff"> cd src && make clean</span>
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<pre style="margin: 0;">-<span id="LC34" class="line" lang="diff"><span class="idiff left right"> </span> cd DEXTRACTOR && make -f ../dextract_makefile clean</span>
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<pre style="margin: 0;">+<span id="LC34" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;"><span class="idiff left right">-</span> cd DEXTRACTOR && make -f ../dextract_makefile clean</span></span>
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<pre style="margin: 0;"> <span id="LC35" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- rm ${HDF5_INSTALL} -rf</span></span>
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<pre style="margin: 0;"> <span id="LC36" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- rm ${HDF5_SOURCE} -rf</span></span>
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<pre style="margin: 0;">-<span id="LC37" class="line" lang="diff"><span class="idiff left right"> </span> rm ${DEXTRACTOR_BIN} -f</span>
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<pre style="margin: 0;">-<span id="LC38" class="line" lang="diff"><span class="idiff left right"> </span></span>
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<pre style="margin: 0;">-<span id="LC39" class="line" lang="diff"><span class="idiff left right"> </span>dextractor: ${BUILD_TOP_DIR}/bin/dexqv ${BUILD_TOP_DIR}/bin/dexta ${BUILD_TOP_DIR}/bin/dextract ${BUILD_TOP_DIR}/bin/undexqv ${BUILD_TOP_DIR}/bin/undexta</span>
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<pre style="margin: 0;">-<span id="LC40" class="line" lang="diff"><span class="p"><span class="idiff left right">@@ -37,18 +29,5 @@</span></span></span>
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<pre style="margin: 0;">-<span id="LC41" class="line" lang="diff"><span class="idiff left right"> </span></span>
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<pre style="margin: 0;">-<span id="LC42" class="line" lang="diff"><span class="idiff left right"> </span>${DEXTRACTOR_BIN}: ${HDF5_LIB}</span>
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<pre style="margin: 0;">-<span id="LC43" class="line" lang="diff"><span class="idiff left right"> </span> mkdir -p ${BUILD_DIR} </span>
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<pre style="margin: 0;">+<span id="LC37" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;"><span class="idiff left right">-</span> rm ${DEXTRACTOR_BIN} -f</span></span>
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<pre style="margin: 0;">+<span id="LC38" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;"><span class="idiff left right">-</span></span></span>
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<pre style="margin: 0;">+<span id="LC39" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;"><span class="idiff left right">-</span>dextractor: ${BUILD_TOP_DIR}/bin/dexqv ${BUILD_TOP_DIR}/bin/dexta ${BUILD_TOP_DIR}/bin/dextract ${BUILD_TOP_DIR}/bin/undexqv ${BUILD_TOP_DIR}/bin/undexta</span></span>
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<pre style="margin: 0;">+<span id="LC40" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;"><span class="idiff left right">-</span></span></span>
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<pre style="margin: 0;">+<span id="LC41" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;"><span class="idiff left right">-</span></span></span>
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<pre style="margin: 0;">+<span id="LC42" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;"><span class="idiff left right">-</span>${DEXTRACTOR_BIN}: ${HDF5_LIB}</span></span>
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<pre style="margin: 0;">+<span id="LC43" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;"><span class="idiff left right">-</span> mkdir -p ${BUILD_DIR} </span></span>
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<pre style="margin: 0;"> <span id="LC44" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- cd DEXTRACTOR && make -f ../dextract_makefile HDF5_INCLUDE=${HDF5_INCLUDE} HDF5_LIB=${HDF5_LIB} </span></span>
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<pre style="margin: 0;">-<span id="LC45" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ cd DEXTRACTOR && make -f ../dextract_makefile HDF5_INCLUDE=/usr/include/hdf5/serial/ HDF5_LIB=/usr/lib/${MACHINE_TYPE_2}-linux-gnu/hdf5/serial/ </span></span>
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<pre style="margin: 0;">-<span id="LC46" class="line" lang="diff"> cd DEXTRACTOR && cp ${DEXTRACTOR_BIN_NAME} ${BUILD_DIR}</span>
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<pre style="margin: 0;">+<span id="LC45" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- cd DEXTRACTOR && cp ${DEXTRACTOR_BIN_NAME} ${BUILD_DIR}</span></span>
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<pre style="margin: 0;"> <span id="LC46" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-</span></span>
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<pre style="margin: 0;"> <span id="LC47" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-${HDF5_LIB}: ${HDF5_TAR_GZ}</span></span>
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<pre style="margin: 0;"> <span id="LC48" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- tar -xzf ${BUILD_TOP_DIR}/hdf5-$(HDF5_VERSION).tar.gz -C ${BUILD_TOP_DIR} || exit 255</span></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="56" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -56,17 +55,35 @@ Last-Update: 2020-06-29</td>
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<pre style="margin: 0;"> <span id="LC55" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- version_major_minor=`echo "$(HDF5_VERSION)" | sed -E 's/\.[0-9]+$$//'`; \</span></span>
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<pre style="margin: 0;"> <span id="LC56" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- cp third_party/hdf5-1.10.4.tar.gz ${BUILD_TOP_DIR}/</span></span>
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<pre style="margin: 0;"> <span id="LC57" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- </span></span>
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<pre style="margin: 0;">-<span id="LC59" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;"><span class="idiff left right">-</span></span></span>
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<pre style="margin: 0;">+<span id="LC58" class="line" lang="diff"><span class="idiff left right"> </span></span>
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<pre style="margin: 0;"> <span id="LC59" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- mecat2.orig/dextract_makefile</span></span>
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<pre style="margin: 0;"> <span id="LC60" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ mecat2/dextract_makefile</span></span>
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<pre style="margin: 0;">-<span id="LC62" class="line" lang="diff"><span class="p">@@ -6,8 +6,8 @@</span></span>
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<pre style="margin: 0;">-<span id="LC63" class="line" lang="diff"> all: dextract dexta undexta dexqv undexqv</span>
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<pre style="margin: 0;">-<span id="LC64" class="line" lang="diff"> </span>
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<pre style="margin: 0;">-<span id="LC65" class="line" lang="diff"> dextract:</span>
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<pre style="margin: 0;">+<span id="LC61" class="line" lang="diff"><span class="p">@@ -1,28 +1 @@</span></span>
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<pre style="margin: 0;">+<span id="LC62" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-CFLAG = -O3 -Wall -Wextra -Wno-unused-result -fno-strict-aliasing</span></span>
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<pre style="margin: 0;">+<span id="LC63" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-CC = gcc</span></span>
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<pre style="margin: 0;">+<span id="LC64" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-</span></span>
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<pre style="margin: 0;">+<span id="LC65" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-HDF5_LIB ?= .libhdf5.a</span></span>
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<pre style="margin: 0;">+<span id="LC66" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-</span></span>
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<pre style="margin: 0;">+<span id="LC67" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-all: dextract dexta undexta dexqv undexqv</span></span>
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<pre style="margin: 0;">+<span id="LC68" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-</span></span>
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<pre style="margin: 0;">+<span id="LC69" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-dextract:</span></span>
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<pre style="margin: 0;"> <span id="LC70" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- #${CC} $(CFLAGS) -I$(HDF5_INCLUDE) -L$(HDF5_LIB) -o dextract dextract.c DB.c QV.c expr.c bax.c sam.c -lhdf5 -lz</span></span>
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<pre style="margin: 0;"> <span id="LC71" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- ${CC} $(CFLAGS) -I$(HDF5_INCLUDE) -o dextract dextract.c DB.c QV.c expr.c bax.c sam.c ${HDF5_LIB} -lpthread -lz -ldl -lm</span></span>
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<pre style="margin: 0;">-<span id="LC68" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ ${CC} $(CFLAGS) -I$(HDF5_INCLUDE) -L$(HDF5_LIB) -o dextract dextract.c DB.c QV.c expr.c bax.c sam.c -lhdf5 -lz -lpthread -lm -ldl</span></span>
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<pre style="margin: 0;">-<span id="LC69" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ #${CC} $(CFLAGS) -I$(HDF5_INCLUDE) -o dextract dextract.c DB.c QV.c expr.c bax.c sam.c ${HDF5_LIB} -lpthread -lz -ldl -lm</span></span>
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<pre style="margin: 0;">+<span id="LC72" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-</span></span>
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<pre style="margin: 0;">+<span id="LC73" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-dexta:</span></span>
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<pre style="margin: 0;">+<span id="LC74" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- ${CC} ${CFLAGS} -o dexta dexta.c DB.c QV.c</span></span>
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<pre style="margin: 0;">+<span id="LC75" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-</span></span>
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76
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<pre style="margin: 0;">+<span id="LC76" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-undexta:</span></span>
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<td class="diff-line-num new new_line" data-linenumber="77" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
77
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<pre style="margin: 0;">+<span id="LC77" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- ${CC} ${CFLAGS} -o undexta undexta.c DB.c QV.c</span></span>
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78
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<pre style="margin: 0;">+<span id="LC78" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-</span></span>
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79
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<pre style="margin: 0;">+<span id="LC79" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-dexqv:</span></span>
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80
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<pre style="margin: 0;">+<span id="LC80" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- ${CC} ${CFLAGS} -o dexqv dexqv.c DB.c QV.c</span></span>
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81
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<pre style="margin: 0;">+<span id="LC81" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-</span></span>
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82
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<pre style="margin: 0;">+<span id="LC82" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-undexqv:</span></span>
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83
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<pre style="margin: 0;">+<span id="LC83" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- ${CC} ${CFLAGS} -o undexqv undexqv.c DB.c QV.c</span></span>
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84
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<pre style="margin: 0;">+<span id="LC84" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-</span></span>
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85
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<pre style="margin: 0;">+<span id="LC85" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-.PHONY: clean</span></span>
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86
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<pre style="margin: 0;">+<span id="LC86" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-clean:</span></span>
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87
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<pre style="margin: 0;">+<span id="LC87" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- rm -f dextract dexta undexta dexqv undexqv</span></span>
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88
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<pre style="margin: 0;">+<span id="LC88" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-</span></span>
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70
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89
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<pre style="margin: 0;"> <span id="LC89" class="line" lang="diff"> </span></pre>
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71
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<pre style="margin: 0;">-<span id="LC71" class="line" lang="diff"> dexta:</span>
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72
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<pre style="margin: 0;">-<span id="LC72" class="line" lang="diff"> ${CC} ${CFLAGS} -o dexta dexta.c DB.c QV.c</span></pre>
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<a href="https://salsa.debian.org/med-team/mecat2/-/compare/8f0dfd5186810bf3d85ee5cccd4cd0a58f92415e...5c72ccdbaed16d950198394a762d03d6adf1e125#bc34014ab4b9a49dd7a27bdd8d352912607c3a96"><strong>debian/patches/series</strong></a>
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="plaintext"><span class="idiff left right">use_system_packaged_lib</span>s.patch</span></pre>
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1
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext"><span class="idiff left right">modify_makefile</span>s.patch</span></pre>
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