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<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/med-team/bbmap">Debian Med / bbmap</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/bbmap/-/commit/ff8fb38215860c7172e357ae7337c64328aa42bd">ff8fb382</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-06-30T22:01:08+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Fix calcmem.sh issue
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/bbmap/-/commit/f4fc10675fbc3fed0232edc98940c7a40452d4fc">f4fc1067</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-06-30T22:01:40+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 38.86+dfsg</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/bbmap/-/commit/1ea57ff7d9bb11f5b01ff670df3ea2261a96b20e">1ea57ff7</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-06-30T22:01:40+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: New upstream version
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/bbmap/-/commit/17c8d0c176196b6ec12cae35b68074d8e232529b">17c8d0c1</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-06-30T22:01:48+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Update upstream source from tag 'upstream/38.86+dfsg'
Update to upstream version '38.86+dfsg'
with Debian dir 9fe0d09c8d67f0937c684e898fb2dfbb15678f05</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/bbmap/-/commit/332baa1aac14a2a0fe8ada1b192d60379cd56acf">332baa1a</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-06-30T22:01:48+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: debhelper-compat 13
</pre>
</li>
</ul>
<h4>22 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#8ec9a00bfd09b3190ac6b22251dbb1aa95a0579d">
README.md
</a>
</li>
<li class="file-stats">
<a href="#e463fa97b3ad8760b49cf0b08654d96aa72d6e84">
applyvariants.sh
</a>
</li>
<li class="file-stats">
<a href="#ec0a3d38277ad19039d901020e4fa5d40049f131">
<span class="new-file">
+
bitbucket-pipelines.yml
</span>
</a>
</li>
<li class="file-stats">
<a href="#bdc348bf75801c527f51cdeddc8edf027f7ef35a">
<span class="new-file">
+
build.xml
</span>
</a>
</li>
<li class="file-stats">
<a href="#61cf421f1524d6f40443ea18a67da6045ca09a79">
callvariants.sh
</a>
</li>
<li class="file-stats">
<a href="#327afe06135d6d3ee5549eea70442f9af8faa761">
<span class="new-file">
+
current/aligner/FlatAligner2.java
</span>
</a>
</li>
<li class="file-stats">
<a href="#5b8e4cc34e5021e8eba5bbbd07fba52303fd55b2">
current/assemble/Tadpole1.java
</a>
</li>
<li class="file-stats">
<a href="#cb6d316542036aecc5337cadcbbf0b0422f36923">
current/consensus/BaseGraph.java
</a>
</li>
<li class="file-stats">
<a href="#d5c1a631c989a9caee4d526a09f041c274bf8dcd">
<span class="new-file">
+
current/hmm/HMMSearchLine.java
</span>
</a>
</li>
<li class="file-stats">
<a href="#a91d4178e0aff68ff42305b13ed8167bc43f69dd">
<span class="new-file">
+
current/hmm/HMMSearchReport.java
</span>
</a>
</li>
<li class="file-stats">
<a href="#87e09ce245832e04b8a3d06edd667cfac9295e33">
current/icecream/IceCreamFinder.java
</a>
</li>
<li class="file-stats">
<a href="#584d71555da7055b365c712c54178c37c6ec66e7">
current/icecream/IceCreamMaker.java
</a>
</li>
<li class="file-stats">
<a href="#d2b638acc69dd64bc5f2830affb511637898049a">
<span class="new-file">
+
current/icecream/PBHeader.java
</span>
</a>
</li>
<li class="file-stats">
<a href="#b535deb381b48e8b550afafea53c094999335a10">
<span class="new-file">
+
current/icecream/ReformatPacBio.java
</span>
</a>
</li>
<li class="file-stats">
<a href="#d25cfb3f5a00a54a1141825bc154a7ea2aa7b539">
<span class="new-file">
+
current/icecream/ZMW.java
</span>
</a>
</li>
<li class="file-stats">
<a href="#d4f7926b33d9833d67b2129ab02e68859ef8da23">
<span class="new-file">
+
current/icecream/ZMWStreamer.java
</span>
</a>
</li>
<li class="file-stats">
<a href="#9e24c4645ee24c3a9b5539e7a6f7c9c994da5a27">
<span class="new-file">
+
current/jasper/KmerPosition.java
</span>
</a>
</li>
<li class="file-stats">
<a href="#b8ba6943cea389e753bb59e81f63c01af4b0ead1">
<span class="new-file">
+
current/jasper/KmerPosition3.java
</span>
</a>
</li>
<li class="file-stats">
<a href="#06a7eaaf098b8d2e7c18a48b5d98671b027f6af9">
current/jgi/BBDuk.java
</a>
</li>
<li class="file-stats">
<a href="#6c851c93e5c485c9a584a9cf3706bed7a03acc00">
current/jgi/RandomGenome.java
</a>
</li>
<li class="file-stats">
<a href="#354de440070f308f32369208d622b97f46e1ac03">
current/jgi/ReformatReads.java
</a>
</li>
<li class="file-stats">
<a href="#ef3b3e694c0bbaa70bf4c35a23c328ce44020fb6">
current/shared/Shared.java
</a>
</li>
</ul>
<h5>The diff was not included because it is too large.</h5>
</div>
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