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<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/med-team/community/helper-scripts">Debian Med / community / helper-scripts</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/community/helper-scripts/-/commit/2b403620cd7fd68d210f16a14fa2ddfb0dfa73bc">2b403620</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-07-02T13:43:58+00:00</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">automatic update
</pre>
</li>
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<h4>2 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#f6d55d24085decec06151dd27f30199089d856ca">
debian-med-tests.txt
</a>
</li>
<li class="file-stats">
<a href="#2654e31016bcee9bbe05d462121706cc8ed368af">
outdated_med-packages.txt
</a>
</li>
</ul>
<h4>Changes:</h4>
<li id="f6d55d24085decec06151dd27f30199089d856ca">
<a href="https://salsa.debian.org/med-team/community/helper-scripts/-/commit/2b403620cd7fd68d210f16a14fa2ddfb0dfa73bc#f6d55d24085decec06151dd27f30199089d856ca"><strong>debian-med-tests.txt</strong></a>
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="plaintext">Last-Update: Thu, 02 Jul 2020 <span class="idiff left right">01:42:04</span> +0000</span>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">Last-Update: Thu, 02 Jul 2020 <span class="idiff left right">13:42:03</span> +0000</span>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext"> Source | Vote | Tasks | Tags </span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext">-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------</span>
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<pre style="margin: 0;">-<span id="LC5" class="line" lang="plaintext"> dcmtk | 18<span class="idiff left right">0</span> | {covid-19,imaging} | </span>
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<pre style="margin: 0;">-<span id="LC6" class="line" lang="plaintext"> orthanc | 9<span class="idiff left right">3</span> | {covid-19,imaging,practice} | </span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext"> dcmtk | 18<span class="idiff left right">2</span> | {covid-19,imaging} | </span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext"> orthanc | 9<span class="idiff left right">4</span> | {covid-19,imaging,practice} | </span>
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="plaintext"> gdcm | 46 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC8" class="line" lang="plaintext"> orthanc-wsi | 44 | {his,practice,covid-19,laboratory,imaging,oncology} | </span>
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<pre style="margin: 0;">-<span id="LC9" class="line" lang="plaintext"> htsjdk | 3<span class="idiff left right">5</span> | {bio-dev} | </span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="plaintext"> htsjdk | 3<span class="idiff left right">4</span> | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="plaintext"> dcm2niix | 22 | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC11" class="line" lang="plaintext"> dicomscope | 20 | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="plaintext"> dicomscope | 21 | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="plaintext"> dicom3tools | 20 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC13" class="line" lang="plaintext"> gnumed-server | 19 | {practice,covid-19} | </span>
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<pre style="margin: 0;">-<span id="LC13" class="line" lang="plaintext"> dicom3tools | 18 | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC14" class="line" lang="plaintext"> ngs-sdk | 18 | {bio-dev} | </span>
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="plaintext"> ngs-sdk | 17 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC15" class="line" lang="plaintext"> gdcm | 16 | {covid-19,imaging} | </span>
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<pre style="margin: 0;">-<span id="LC16" class="line" lang="plaintext"> gdcm | 1<span class="idiff left right">2</span> | {imaging-dev} | </span>
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="plaintext"> gdcm | 1<span class="idiff left right">3</span> | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC17" class="line" lang="plaintext"> insighttoolkit4 | 12 | {imaging-dev} | </span>
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<pre style="margin: 0;">-<span id="LC18" class="line" lang="plaintext"> jebl2 | 12 | {bio-dev} | </span>
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<pre style="margin: 0;">-<span id="LC19" class="line" lang="plaintext"> invesalius | 11 | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC20" class="line" lang="plaintext"> minc-tools | 10 | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC21" class="line" lang="plaintext"> adun.app | 9 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC22" class="line" lang="plaintext"> melting | 9 | {bio,cloud} | </span>
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<pre style="margin: 0;">-<span id="LC23" class="line" lang="plaintext"> ngs-sdk | 9 | {bio-dev} | </span>
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<pre style="margin: 0;">-<span id="LC24" class="line" lang="plaintext"> openslide | 9 | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC18" class="line" lang="plaintext"> invesalius | 12 | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="plaintext"> jebl2 | 11 | {bio-dev} | </span>
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<pre style="margin: 0;">+<span id="LC20" class="line" lang="plaintext"> minc-tools | 11 | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC21" class="line" lang="plaintext"> dicompyler | 9 | {oncology} | </span>
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<pre style="margin: 0;"> <span id="LC22" class="line" lang="plaintext"> pixelmed | 9 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC23" class="line" lang="plaintext"> psychopy | 9 | {psychology} | </span>
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<pre style="margin: 0;">-<span id="LC27" class="line" lang="plaintext"> king | 8 | {imaging,typesetting} | </span>
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<pre style="margin: 0;">-<span id="LC28" class="line" lang="plaintext"> lagan | 8 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC24" class="line" lang="plaintext"> adun.app | 8 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC25" class="line" lang="plaintext"> libdivsufsort | 8 | {bio-dev} | </span>
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<pre style="margin: 0;">-<span id="LC30" class="line" lang="plaintext"> maqview | 8 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC31" class="line" lang="plaintext"> obitools | 8 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC26" class="line" lang="plaintext"> melting | 8 | {bio,cloud} | </span>
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<pre style="margin: 0;">+<span id="LC27" class="line" lang="plaintext"> ngs-sdk | 8 | {bio-dev} | </span>
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<pre style="margin: 0;">+<span id="LC28" class="line" lang="plaintext"> openslide | 8 | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC29" class="line" lang="plaintext"> plastimatch | 8 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC30" class="line" lang="plaintext"> pymia | 8 | {imaging-dev} | </span>
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<pre style="margin: 0;">-<span id="LC33" class="line" lang="plaintext"> stacks | 8 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC34" class="line" lang="plaintext"> treeview | 8 | {bio-phylogeny,bio} | </span>
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<pre style="margin: 0;">+<span id="LC31" class="line" lang="plaintext"> vtk-dicom | 8 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC32" class="line" lang="plaintext"> biosig4c++ | 7 | {physics,imaging} | </span>
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<pre style="margin: 0;">-<span id="LC36" class="line" lang="plaintext"> dicompyler | 7 | {oncology} | </span>
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<pre style="margin: 0;">-<span id="LC37" class="line" lang="plaintext"> ea-utils | 7 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC38" class="line" lang="plaintext"> fastlink | 7 | {cloud,bio} | </span>
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<pre style="margin: 0;">-<span id="LC39" class="line" lang="plaintext"> king-probe | 7 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC33" class="line" lang="plaintext"> lagan | 7 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC34" class="line" lang="plaintext"> libminc | 7 | {imaging-dev} | </span>
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<pre style="margin: 0;">-<span id="LC41" class="line" lang="plaintext"> <span class="idiff left right">librg-utils-perl</span> | 7 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC35" class="line" lang="plaintext"> <span class="idiff left right">maqview </span> | 7 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC36" class="line" lang="plaintext"> orthanc-webviewer | 7 | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC43" class="line" lang="plaintext"> paraclu | 7 | {cloud,bio} | </span>
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<pre style="margin: 0;">-<span id="LC44" class="line" lang="plaintext"> plastimatch | 7 | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC45" class="line" lang="plaintext"> seqsero | 7 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC46" class="line" lang="plaintext"> vtk-dicom | 7 | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC47" class="line" lang="plaintext"> anfo | 6 | {bio,cloud} | </span>
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<pre style="margin: 0;">-<span id="LC48" class="line" lang="plaintext"> biojava-live | 6 | {bio-dev} | </span>
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<pre style="margin: 0;">-<span id="LC49" class="line" lang="plaintext"> jaligner | 6 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC50" class="line" lang="plaintext"> mlv-smile | 6 | {bio,cloud} | </span>
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<pre style="margin: 0;">-<span id="LC51" class="line" lang="plaintext"> ncbi-seg | 6 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC37" class="line" lang="plaintext"> stacks | 7 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC38" class="line" lang="plaintext"> treeview | 7 | {bio-phylogeny,bio} | </span>
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<pre style="margin: 0;">+<span id="LC39" class="line" lang="plaintext"> ea-utils | 6 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC40" class="line" lang="plaintext"> king | 6 | {imaging,typesetting} | </span>
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<pre style="margin: 0;">+<span id="LC41" class="line" lang="plaintext"> king-probe | 6 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC42" class="line" lang="plaintext"> librg-utils-perl | 6 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC43" class="line" lang="plaintext"> obitools | 6 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC44" class="line" lang="plaintext"> orthanc-dicomweb | 6 | {imaging,covid-19} | </span>
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<pre style="margin: 0;">-<span id="LC53" class="line" lang="plaintext"> sibsim4 | 6 | {bio,cloud} | </span>
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<pre style="margin: 0;">-<span id="LC54" class="line" lang="plaintext"> sigma-align | 6 | {bio-phylogeny,cloud,bio} | </span>
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<pre style="margin: 0;">-<span id="LC55" class="line" lang="plaintext"> staden | 6 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC56" class="line" lang="plaintext"> zalign | 6 | {cloud,bio} | </span>
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<pre style="margin: 0;">-<span id="LC57" class="line" lang="plaintext"> biomaj3-cli | 5 | {cloud} | </span>
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<pre style="margin: 0;">-<span id="LC58" class="line" lang="plaintext"> ecopcr | 5 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC59" class="line" lang="plaintext"> gatb-core | 5 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC45" class="line" lang="plaintext"> paraclu | 6 | {cloud,bio} | </span>
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<pre style="margin: 0;">+<span id="LC46" class="line" lang="plaintext"> seqsero | 6 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC47" class="line" lang="plaintext"> anfo | 5 | {bio,cloud} | </span>
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<pre style="margin: 0;">+<span id="LC48" class="line" lang="plaintext"> biojava-live | 5 | {bio-dev} | </span>
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<pre style="margin: 0;">+<span id="LC49" class="line" lang="plaintext"> fastlink | 5 | {cloud,bio} | </span>
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<pre style="margin: 0;"> <span id="LC50" class="line" lang="plaintext"> getdata | 5 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC61" class="line" lang="plaintext"> microbegps | 5 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC62" class="line" lang="plaintext"> mipe | 5 | {cloud,bio} | </span>
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<pre style="margin: 0;">-<span id="LC63" class="line" lang="plaintext"> neobio | 5 | {cloud,bio} | </span>
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<pre style="margin: 0;">+<span id="LC51" class="line" lang="plaintext"> jaligner | 5 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC52" class="line" lang="plaintext"> mlv-smile | 5 | {bio,cloud} | </span>
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<pre style="margin: 0;"> <span id="LC53" class="line" lang="plaintext"> orthanc-mysql | 5 | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC65" class="line" lang="plaintext"> phyutility | 5 | {bio,cloud} | </span>
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<pre style="margin: 0;">-<span id="LC66" class="line" lang="plaintext"> piler | 5 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC67" class="line" lang="plaintext"> rdp-alignment | 5 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC68" class="line" lang="plaintext"> rdp-readseq | 5 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC69" class="line" lang="plaintext"> snap-aligner | 5 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC70" class="line" lang="plaintext"> spread-phy | 5 | {bio-phylogeny,bio} | </span>
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<pre style="margin: 0;">-<span id="LC71" class="line" lang="plaintext"> squizz | 5 | {bio,cloud} | </span>
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<pre style="margin: 0;">-<span id="LC72" class="line" lang="plaintext"> tnseq-transit | 5 | {covid-19,bio} | </span>
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<pre style="margin: 0;">-<span id="LC73" class="line" lang="plaintext"> transtermhp | 5 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC74" class="line" lang="plaintext"> alter-sequence-alignment | 4 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC75" class="line" lang="plaintext"> ampliconnoise | 4 | {cloud,bio} | </span>
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<pre style="margin: 0;">-<span id="LC76" class="line" lang="plaintext"> bandage | 4 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC54" class="line" lang="plaintext"> sibsim4 | 5 | {bio,cloud} | </span>
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<pre style="margin: 0;">+<span id="LC55" class="line" lang="plaintext"> sigma-align | 5 | {bio-phylogeny,cloud,bio} | </span>
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<pre style="margin: 0;">+<span id="LC56" class="line" lang="plaintext"> staden | 5 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC57" class="line" lang="plaintext"> zalign | 5 | {cloud,bio} | </span>
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<pre style="margin: 0;"> <span id="LC58" class="line" lang="plaintext"> bart-view | 4 | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC78" class="line" lang="plaintext"> biomaj3-daemon | 4 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC79" class="line" lang="plaintext"> brig | 4 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC80" class="line" lang="plaintext"> delly | 4 | {bio,covid-19} | </span>
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<pre style="margin: 0;">-<span id="LC81" class="line" lang="plaintext"> edtsurf | 4 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC82" class="line" lang="plaintext"> embassy-domainatrix | 4 | {cloud,bio} | </span>
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<pre style="margin: 0;">-<span id="LC83" class="line" lang="plaintext"> embassy-domalign | 4 | {cloud,bio} | </span>
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<pre style="margin: 0;">-<span id="LC84" class="line" lang="plaintext"> embassy-domsearch | 4 | {bio,cloud} | </span>
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<pre style="margin: 0;">-<span id="LC85" class="line" lang="plaintext"> ghmm | 4 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC86" class="line" lang="plaintext"> ipig | 4 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC87" class="line" lang="plaintext"> libncl | 4 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC88" class="line" lang="plaintext"> librdp-taxonomy-tree-java | 4 | {bio-dev} | </span>
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<pre style="margin: 0;">-<span id="LC89" class="line" lang="plaintext"> maffilter | 4 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC90" class="line" lang="plaintext"> mauve-aligner | 4 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC91" class="line" lang="plaintext"> mhap | 4 | {bio-ngs,bio} | </span>
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<pre style="margin: 0;">+<span id="LC59" class="line" lang="plaintext"> gatb-core | 4 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC60" class="line" lang="plaintext"> microbegps | 4 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC61" class="line" lang="plaintext"> mipe | 4 | {cloud,bio} | </span>
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62
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<pre style="margin: 0;"> <span id="LC62" class="line" lang="plaintext"> mrs | 4 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC63" class="line" lang="plaintext"> ncbi-seg | 4 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC64" class="line" lang="plaintext"> neobio | 4 | {cloud,bio} | </span>
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<pre style="margin: 0;"> <span id="LC65" class="line" lang="plaintext"> orthanc-postgresql | 4 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC66" class="line" lang="plaintext"> pal2nal | 4 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC95" class="line" lang="plaintext"> perm | 4 | {cloud,bio} | </span>
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<pre style="margin: 0;">-<span id="LC96" class="line" lang="plaintext"> placnet | 4 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC97" class="line" lang="plaintext"> predictprotein | 4 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC98" class="line" lang="plaintext"> proalign | 4 | {bio-phylogeny,bio} | </span>
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<pre style="margin: 0;">-<span id="LC99" class="line" lang="plaintext"> probabel | 4 | {cloud,bio} | </span>
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<pre style="margin: 0;">+<span id="LC67" class="line" lang="plaintext"> phyutility | 4 | {bio,cloud} | </span>
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<pre style="margin: 0;">+<span id="LC68" class="line" lang="plaintext"> piler | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC69" class="line" lang="plaintext"> qrisk2 | 4 | {practice} | </span>
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<pre style="margin: 0;">-<span id="LC101" class="line" lang="plaintext"> rambo-k | 4 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC102" class="line" lang="plaintext"> rdp-classifier | 4 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC103" class="line" lang="plaintext"> relion | 4 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC104" class="line" lang="plaintext"> runcircos-gui | 4 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC105" class="line" lang="plaintext"> saint | 4 | {bio} | </span>
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70
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<pre style="margin: 0;"> <span id="LC70" class="line" lang="plaintext"> salmon | 4 | {bio,covid-19} | </span>
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<pre style="margin: 0;">-<span id="LC107" class="line" lang="plaintext"> scythe | 4 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC108" class="line" lang="plaintext"> segemehl | 4 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC109" class="line" lang="plaintext"> seqmagick | 4 | {covid-19,bio} | </span>
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<pre style="margin: 0;">-<span id="LC110" class="line" lang="plaintext"> tracetuner | 4 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC111" class="line" lang="plaintext"> arden | 3 | {bio,cloud} | </span>
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<pre style="margin: 0;">-<span id="LC112" class="line" lang="plaintext"> assemblytics | 3 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC113" class="line" lang="plaintext"> baitfisher | 3 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC114" class="line" lang="plaintext"> beast2-mcmc | 3 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC115" class="line" lang="plaintext"> beast-mcmc | 3 | {bio-phylogeny,bio} | </span>
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<pre style="margin: 0;">-<span id="LC116" class="line" lang="plaintext"> bio-rainbow | 3 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC117" class="line" lang="plaintext"> biosig4c++ | 3 | {physics,imaging-dev} | </span>
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<pre style="margin: 0;">-<span id="LC118" class="line" lang="plaintext"> bio-tradis | 3 | {bio-dev,bio} | </span>
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<pre style="margin: 0;">-<span id="LC119" class="line" lang="plaintext"> bitseq | 3 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC120" class="line" lang="plaintext"> canu | 3 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC121" class="line" lang="plaintext"> centrifuge | 3 | {bio,covid-19} | </span>
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<pre style="margin: 0;">-<span id="LC122" class="line" lang="plaintext"> clonalframeml | 3 | {bio,covid-19} | </span>
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<pre style="margin: 0;">-<span id="LC123" class="line" lang="plaintext"> clonalorigin | 3 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC124" class="line" lang="plaintext"> daligner | 3 | {bio-ngs,bio} | </span>
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<pre style="margin: 0;">-<span id="LC125" class="line" lang="plaintext"> dascrubber | 3 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC126" class="line" lang="plaintext"> dazzdb | 3 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC127" class="line" lang="plaintext"> dindel | 3 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC128" class="line" lang="plaintext"> dwgsim | 3 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC129" class="line" lang="plaintext"> estscan | 3 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC130" class="line" lang="plaintext"> fastml | 3 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC131" class="line" lang="plaintext"> fsm-lite | 3 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC132" class="line" lang="plaintext"> harvest-tools | 3 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC133" class="line" lang="plaintext"> hinge | 3 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC134" class="line" lang="plaintext"> jellyfish1 | 3 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC135" class="line" lang="plaintext"> jmodeltest | 3 | {bio-phylogeny,bio} | </span>
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<pre style="margin: 0;">-<span id="LC136" class="line" lang="plaintext"> lamarc | 3 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC137" class="line" lang="plaintext"> libpal-java | 3 | {bio-dev} | </span>
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<pre style="margin: 0;">-<span id="LC138" class="line" lang="plaintext"> metaphlan2 | 3 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC139" class="line" lang="plaintext"> mptp | 3 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC71" class="line" lang="plaintext"> spread-phy | 4 | {bio-phylogeny,bio} | </span>
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<pre style="margin: 0;">+<span id="LC72" class="line" lang="plaintext"> squizz | 4 | {bio,cloud} | </span>
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<pre style="margin: 0;">+<span id="LC73" class="line" lang="plaintext"> tnseq-transit | 4 | {covid-19,bio} | </span>
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<pre style="margin: 0;">+<span id="LC74" class="line" lang="plaintext"> transtermhp | 4 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC75" class="line" lang="plaintext"> ampliconnoise | 3 | {cloud,bio} | </span>
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<pre style="margin: 0;">+<span id="LC76" class="line" lang="plaintext"> bandage | 3 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC77" class="line" lang="plaintext"> biomaj3-cli | 3 | {cloud} | </span>
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<pre style="margin: 0;">+<span id="LC78" class="line" lang="plaintext"> brig | 3 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC79" class="line" lang="plaintext"> busco | 3 | {covid-19,bio} | </span>
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80
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<pre style="margin: 0;">+<span id="LC80" class="line" lang="plaintext"> delly | 3 | {bio,covid-19} | </span>
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81
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<pre style="margin: 0;">+<span id="LC81" class="line" lang="plaintext"> ecopcr | 3 | {bio} | </span>
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82
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<pre style="margin: 0;">+<span id="LC82" class="line" lang="plaintext"> edtsurf | 3 | {bio} | </span>
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83
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<pre style="margin: 0;">+<span id="LC83" class="line" lang="plaintext"> elastix | 3 | {imaging} | </span>
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84
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<pre style="margin: 0;">+<span id="LC84" class="line" lang="plaintext"> embassy-domainatrix | 3 | {cloud,bio} | </span>
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85
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<pre style="margin: 0;">+<span id="LC85" class="line" lang="plaintext"> embassy-domalign | 3 | {cloud,bio} | </span>
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86
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<pre style="margin: 0;">+<span id="LC86" class="line" lang="plaintext"> embassy-domsearch | 3 | {bio,cloud} | </span>
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87
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<pre style="margin: 0;">+<span id="LC87" class="line" lang="plaintext"> ghmm | 3 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC88" class="line" lang="plaintext"> ipig | 3 | {bio} | </span>
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89
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<pre style="margin: 0;">+<span id="LC89" class="line" lang="plaintext"> libncl | 3 | {bio} | </span>
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90
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<pre style="margin: 0;">+<span id="LC90" class="line" lang="plaintext"> librdp-taxonomy-tree-java | 3 | {bio-dev} | </span>
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<pre style="margin: 0;">+<span id="LC91" class="line" lang="plaintext"> maffilter | 3 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC92" class="line" lang="plaintext"> mauve-aligner | 3 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC93" class="line" lang="plaintext"> mhap | 3 | {bio-ngs,bio} | </span>
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<pre style="margin: 0;"> <span id="LC94" class="line" lang="plaintext"> multiqc | 3 | {bio,covid-19} | </span>
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<pre style="margin: 0;">-<span id="LC141" class="line" lang="plaintext"> murasaki | 3 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC142" class="line" lang="plaintext"> nutsqlite | 3 | {tools} | </span>
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<pre style="margin: 0;">-<span id="LC143" class="line" lang="plaintext"> openslide | 3 | {imaging-dev} | </span>
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<pre style="margin: 0;">-<span id="LC144" class="line" lang="plaintext"> patman | 3 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC145" class="line" lang="plaintext"> phast | 3 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC146" class="line" lang="plaintext"> phybin | 3 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC147" class="line" lang="plaintext"> prime-phylo | 3 | {bio,cloud} | </span>
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<pre style="margin: 0;">-<span id="LC148" class="line" lang="plaintext"> prottest | 3 | {bio-phylogeny,bio} | </span>
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<pre style="margin: 0;">-<span id="LC149" class="line" lang="plaintext"> pscan-chip | 3 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC150" class="line" lang="plaintext"> pscan-tfbs | 3 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC151" class="line" lang="plaintext"> qcumber | 3 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC152" class="line" lang="plaintext"> quorum | 3 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC153" class="line" lang="plaintext"> radiant | 3 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC154" class="line" lang="plaintext"> rampler | 3 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC155" class="line" lang="plaintext"> repeatmasker-recon | 3 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC156" class="line" lang="plaintext"> roguenarok | 3 | {bio} | </span>
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157
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<pre style="margin: 0;">-<span id="LC157" class="line" lang="plaintext"> rtax | 3 | {cloud,bio} | </span>
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158
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<pre style="margin: 0;">-<span id="LC158" class="line" lang="plaintext"> samblaster | 3 | {covid-19,bio} | </span>
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<pre style="margin: 0;">-<span id="LC159" class="line" lang="plaintext"> scrm | 3 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC160" class="line" lang="plaintext"> sga | 3 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC161" class="line" lang="plaintext"> soapaligner | 3 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC162" class="line" lang="plaintext"> soapsnp | 3 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC163" class="line" lang="plaintext"> spaced | 3 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC164" class="line" lang="plaintext"> sprai | 3 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC165" class="line" lang="plaintext"> suitename | 3 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC166" class="line" lang="plaintext"> surankco | 3 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC167" class="line" lang="plaintext"> sweed | 3 | {bio} | </span>
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168
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<pre style="margin: 0;">-<span id="LC168" class="line" lang="plaintext"> tvc | 3 | {bio} | </span>
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169
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<pre style="margin: 0;">-<span id="LC169" class="line" lang="plaintext"> yaha | 3 | {bio} | </span>
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170
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<pre style="margin: 0;">-<span id="LC170" class="line" lang="plaintext"> biosig4c++ | 2 | {physics,imaging-dev} | </span>
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171
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<pre style="margin: 0;">-<span id="LC171" class="line" lang="plaintext"> blasr | 2 | {bio,bio-ngs} | </span>
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172
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<pre style="margin: 0;">-<span id="LC172" class="line" lang="plaintext"> busco | 2 | {covid-19,bio} | </span>
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173
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<pre style="margin: 0;">-<span id="LC173" class="line" lang="plaintext"> elastix | 2 | {imaging} | </span>
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<td class="diff-line-num old old_line" data-linenumber="174" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
174
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<pre style="margin: 0;">-<span id="LC174" class="line" lang="plaintext"> embassy-phylip | 2 | {bio,cloud} | </span>
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95
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<pre style="margin: 0;">+<span id="LC95" class="line" lang="plaintext"> perm | 3 | {cloud,bio} | </span>
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96
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<pre style="margin: 0;">+<span id="LC96" class="line" lang="plaintext"> placnet | 3 | {bio} | </span>
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97
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<pre style="margin: 0;">+<span id="LC97" class="line" lang="plaintext"> predictprotein | 3 | {bio} | </span>
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98
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<pre style="margin: 0;">+<span id="LC98" class="line" lang="plaintext"> proalign | 3 | {bio-phylogeny,bio} | </span>
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99
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<pre style="margin: 0;">+<span id="LC99" class="line" lang="plaintext"> probabel | 3 | {cloud,bio} | </span>
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100
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<pre style="margin: 0;">+<span id="LC100" class="line" lang="plaintext"> rambo-k | 3 | {bio} | </span>
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101
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<pre style="margin: 0;">+<span id="LC101" class="line" lang="plaintext"> rdp-alignment | 3 | {bio} | </span>
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102
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<pre style="margin: 0;">+<span id="LC102" class="line" lang="plaintext"> rdp-classifier | 3 | {bio} | </span>
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103
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<pre style="margin: 0;">+<span id="LC103" class="line" lang="plaintext"> rdp-readseq | 3 | {bio} | </span>
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104
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<pre style="margin: 0;">+<span id="LC104" class="line" lang="plaintext"> relion | 3 | {bio} | </span>
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105
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<pre style="margin: 0;">+<span id="LC105" class="line" lang="plaintext"> runcircos-gui | 3 | {bio} | </span>
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106
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<pre style="margin: 0;">+<span id="LC106" class="line" lang="plaintext"> saint | 3 | {bio} | </span>
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107
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<pre style="margin: 0;">+<span id="LC107" class="line" lang="plaintext"> scythe | 3 | {bio} | </span>
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108
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<pre style="margin: 0;">+<span id="LC108" class="line" lang="plaintext"> segemehl | 3 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC109" class="line" lang="plaintext"> seqmagick | 3 | {covid-19,bio} | </span>
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110
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<pre style="margin: 0;">+<span id="LC110" class="line" lang="plaintext"> snap-aligner | 3 | {bio} | </span>
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111
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<pre style="margin: 0;">+<span id="LC111" class="line" lang="plaintext"> tracetuner | 3 | {bio} | </span>
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112
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<pre style="margin: 0;">+<span id="LC112" class="line" lang="plaintext"> alter-sequence-alignment | 2 | {bio} | </span>
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113
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<pre style="margin: 0;">+<span id="LC113" class="line" lang="plaintext"> arden | 2 | {bio,cloud} | </span>
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114
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<pre style="margin: 0;">+<span id="LC114" class="line" lang="plaintext"> assemblytics | 2 | {bio} | </span>
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115
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<pre style="margin: 0;">+<span id="LC115" class="line" lang="plaintext"> baitfisher | 2 | {bio} | </span>
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116
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<pre style="margin: 0;">+<span id="LC116" class="line" lang="plaintext"> beast2-mcmc | 2 | {bio} | </span>
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117
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<pre style="margin: 0;">+<span id="LC117" class="line" lang="plaintext"> beast-mcmc | 2 | {bio-phylogeny,bio} | </span>
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118
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<pre style="margin: 0;">+<span id="LC118" class="line" lang="plaintext"> biomaj3-daemon | 2 | {bio} | </span>
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119
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<pre style="margin: 0;">+<span id="LC119" class="line" lang="plaintext"> bio-rainbow | 2 | {bio} | </span>
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120
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<pre style="margin: 0;">+<span id="LC120" class="line" lang="plaintext"> bio-tradis | 2 | {bio-dev,bio} | </span>
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121
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<pre style="margin: 0;">+<span id="LC121" class="line" lang="plaintext"> bitseq | 2 | {bio} | </span>
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122
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<pre style="margin: 0;">+<span id="LC122" class="line" lang="plaintext"> canu | 2 | {bio} | </span>
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123
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<pre style="margin: 0;">+<span id="LC123" class="line" lang="plaintext"> centrifuge | 2 | {bio,covid-19} | </span>
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124
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<pre style="margin: 0;">+<span id="LC124" class="line" lang="plaintext"> clonalframeml | 2 | {bio,covid-19} | </span>
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125
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<pre style="margin: 0;">+<span id="LC125" class="line" lang="plaintext"> clonalorigin | 2 | {bio} | </span>
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<td class="diff-line-num new new_line" data-linenumber="126" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
126
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<pre style="margin: 0;">+<span id="LC126" class="line" lang="plaintext"> daligner | 2 | {bio-ngs,bio} | </span>
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127
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<pre style="margin: 0;">+<span id="LC127" class="line" lang="plaintext"> dascrubber | 2 | {bio} | </span>
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128
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<pre style="margin: 0;">+<span id="LC128" class="line" lang="plaintext"> dazzdb | 2 | {bio} | </span>
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129
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<pre style="margin: 0;">+<span id="LC129" class="line" lang="plaintext"> dindel | 2 | {bio} | </span>
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130
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<pre style="margin: 0;">+<span id="LC130" class="line" lang="plaintext"> dwgsim | 2 | {bio} | </span>
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131
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<pre style="margin: 0;">+<span id="LC131" class="line" lang="plaintext"> estscan | 2 | {bio} | </span>
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132
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<pre style="margin: 0;">+<span id="LC132" class="line" lang="plaintext"> fastml | 2 | {bio} | </span>
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133
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<pre style="margin: 0;">+<span id="LC133" class="line" lang="plaintext"> fsm-lite | 2 | {bio} | </span>
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<td class="diff-line-num new new_line" data-linenumber="134" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
134
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<pre style="margin: 0;">+<span id="LC134" class="line" lang="plaintext"> harvest-tools | 2 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC135" class="line" lang="plaintext"> hinge | 2 | {bio} | </span>
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136
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<pre style="margin: 0;">+<span id="LC136" class="line" lang="plaintext"> jellyfish1 | 2 | {bio} | </span>
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137
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<pre style="margin: 0;">+<span id="LC137" class="line" lang="plaintext"> jmodeltest | 2 | {bio-phylogeny,bio} | </span>
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138
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<pre style="margin: 0;">+<span id="LC138" class="line" lang="plaintext"> lamarc | 2 | {bio} | </span>
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175
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139
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<pre style="margin: 0;"> <span id="LC139" class="line" lang="plaintext"> libctapimkt | 2 | {practice} | </span>
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176
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<pre style="margin: 0;">-<span id="LC176" class="line" lang="plaintext"> libvistaio | 2 | {imaging-dev} | </span>
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177
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<pre style="margin: 0;">-<span id="LC177" class="line" lang="plaintext"> logol | 2 | {bio} | </span>
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178
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<pre style="margin: 0;">-<span id="LC178" class="line" lang="plaintext"> nanook | 2 | {bio,covid-19} | </span>
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140
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<pre style="margin: 0;">+<span id="LC140" class="line" lang="plaintext"> libpal-java | 2 | {bio-dev} | </span>
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141
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<pre style="margin: 0;">+<span id="LC141" class="line" lang="plaintext"> metaphlan2 | 2 | {bio} | </span>
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142
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<pre style="margin: 0;">+<span id="LC142" class="line" lang="plaintext"> mptp | 2 | {bio} | </span>
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143
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<pre style="margin: 0;">+<span id="LC143" class="line" lang="plaintext"> murasaki | 2 | {bio} | </span>
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179
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144
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<pre style="margin: 0;"> <span id="LC144" class="line" lang="plaintext"> ncbi-vdb | 2 | {bio-dev} | </span>
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145
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<pre style="margin: 0;">+<span id="LC145" class="line" lang="plaintext"> nutsqlite | 2 | {tools} | </span>
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146
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<pre style="margin: 0;">+<span id="LC146" class="line" lang="plaintext"> openslide | 2 | {imaging-dev} | </span>
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180
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147
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<pre style="margin: 0;"> <span id="LC147" class="line" lang="plaintext"> oscar | 2 | {practice,tools,data} | </span>
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181
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<pre style="margin: 0;">-<span id="LC181" class="line" lang="plaintext"> pbdagcon | 2 | {bio} | </span>
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182
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<pre style="margin: 0;">-<span id="LC182" class="line" lang="plaintext"> phipack | 2 | {bio} | </span>
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183
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<pre style="margin: 0;">-<span id="LC183" class="line" lang="plaintext"> plasmidseeker | 2 | {bio} | </span>
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148
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<pre style="margin: 0;">+<span id="LC148" class="line" lang="plaintext"> patman | 2 | {bio} | </span>
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149
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<pre style="margin: 0;">+<span id="LC149" class="line" lang="plaintext"> phast | 2 | {bio} | </span>
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150
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<pre style="margin: 0;">+<span id="LC150" class="line" lang="plaintext"> phybin | 2 | {bio} | </span>
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151
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<pre style="margin: 0;">+<span id="LC151" class="line" lang="plaintext"> prime-phylo | 2 | {bio,cloud} | </span>
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152
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<pre style="margin: 0;">+<span id="LC152" class="line" lang="plaintext"> prottest | 2 | {bio-phylogeny,bio} | </span>
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153
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<pre style="margin: 0;">+<span id="LC153" class="line" lang="plaintext"> pscan-chip | 2 | {bio} | </span>
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<td class="diff-line-num new old_line" data-linenumber="184" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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154
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<pre style="margin: 0;">+<span id="LC154" class="line" lang="plaintext"> pscan-tfbs | 2 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC155" class="line" lang="plaintext"> qcumber | 2 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC156" class="line" lang="plaintext"> quorum | 2 | {bio} | </span>
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157
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<pre style="margin: 0;">+<span id="LC157" class="line" lang="plaintext"> radiant | 2 | {bio} | </span>
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158
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<pre style="margin: 0;">+<span id="LC158" class="line" lang="plaintext"> rampler | 2 | {bio} | </span>
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159
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<pre style="margin: 0;">+<span id="LC159" class="line" lang="plaintext"> repeatmasker-recon | 2 | {bio} | </span>
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160
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<pre style="margin: 0;">+<span id="LC160" class="line" lang="plaintext"> roguenarok | 2 | {bio} | </span>
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161
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<pre style="margin: 0;">+<span id="LC161" class="line" lang="plaintext"> rtax | 2 | {cloud,bio} | </span>
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162
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<pre style="margin: 0;">+<span id="LC162" class="line" lang="plaintext"> samblaster | 2 | {covid-19,bio} | </span>
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184
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163
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<pre style="margin: 0;"> <span id="LC163" class="line" lang="plaintext"> samtools-legacy | 2 | {bio-dev} | </span>
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164
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<pre style="margin: 0;">+<span id="LC164" class="line" lang="plaintext"> scrm | 2 | {bio} | </span>
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185
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165
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<pre style="margin: 0;"> <span id="LC165" class="line" lang="plaintext"> seqan | 2 | {bio-dev} | </span>
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186
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<pre style="margin: 0;">-<span id="LC186" class="line" lang="plaintext"> velvetoptimiser | 2 | {bio} | </span>
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166
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<pre style="margin: 0;">+<span id="LC166" class="line" lang="plaintext"> sga | 2 | {bio} | </span>
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167
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<pre style="margin: 0;">+<span id="LC167" class="line" lang="plaintext"> soapaligner | 2 | {bio} | </span>
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168
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<pre style="margin: 0;">+<span id="LC168" class="line" lang="plaintext"> soapsnp | 2 | {bio} | </span>
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169
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<pre style="margin: 0;">+<span id="LC169" class="line" lang="plaintext"> spaced | 2 | {bio} | </span>
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170
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<pre style="margin: 0;">+<span id="LC170" class="line" lang="plaintext"> sprai | 2 | {bio} | </span>
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171
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<pre style="margin: 0;">+<span id="LC171" class="line" lang="plaintext"> suitename | 2 | {bio} | </span>
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172
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<pre style="margin: 0;">+<span id="LC172" class="line" lang="plaintext"> surankco | 2 | {bio} | </span>
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173
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<pre style="margin: 0;">+<span id="LC173" class="line" lang="plaintext"> sweed | 2 | {bio} | </span>
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174
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<pre style="margin: 0;">+<span id="LC174" class="line" lang="plaintext"> tvc | 2 | {bio} | </span>
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175
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<pre style="margin: 0;">+<span id="LC175" class="line" lang="plaintext"> yaha | 2 | {bio} | </span>
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187
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176
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<pre style="margin: 0;"> <span id="LC176" class="line" lang="plaintext"> atropos | 1 | {bio} | </span>
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<td class="diff-line-num new new_line" data-linenumber="177" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
177
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<pre style="margin: 0;">+<span id="LC177" class="line" lang="plaintext"> biosig4c++ | 1 | {physics,imaging-dev} | </span>
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<td class="diff-line-num new new_line" data-linenumber="178" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
178
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<pre style="margin: 0;">+<span id="LC178" class="line" lang="plaintext"> blasr | 1 | {bio,bio-ngs} | </span>
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188
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179
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<pre style="margin: 0;"> <span id="LC179" class="line" lang="plaintext"> blimps | 1 | {bio} | </span>
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180
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<pre style="margin: 0;"> <span id="LC180" class="line" lang="plaintext"> cat-bat | 1 | {bio,covid-19} | </span>
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190
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181
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<pre style="margin: 0;"> <span id="LC181" class="line" lang="plaintext"> cufflinks | 1 | {cloud,bio} | </span>
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<pre style="margin: 0;">-<span id="LC191" class="line" lang="plaintext"> emb<span class="idiff left right">oss-explorer | 1 | {bio} </span> | </span>
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182
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<pre style="margin: 0;">+<span id="LC182" class="line" lang="plaintext"> emb<span class="idiff left right">assy-phylip | 1 | {bio,cloud}</span> | </span>
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192
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183
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<pre style="margin: 0;"> <span id="LC183" class="line" lang="plaintext"> gatb-core | 1 | {bio-dev} | </span>
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193
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184
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<pre style="margin: 0;"> <span id="LC184" class="line" lang="plaintext"> htscodecs | 1 | {covid-19,bio-dev} | </span>
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194
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185
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<pre style="margin: 0;"> <span id="LC185" class="line" lang="plaintext"> libchado-perl | 1 | {bio-dev} | </span>
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195
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186
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<pre style="margin: 0;"> <span id="LC186" class="line" lang="plaintext"> libdisorder | 1 | {bio-dev} | </span>
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<pre style="margin: 0;">-<span id="LC196" class="line" lang="plaintext"> libmaus2 | 1 | {covid-19,bio-dev} | </span>
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197
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<pre style="margin: 0;">-<span id="LC197" class="line" lang="plaintext"> libmialm | 1 | {imaging-dev} | </span>
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198
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187
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<pre style="margin: 0;"> <span id="LC187" class="line" lang="plaintext"> libsbml | 1 | {bio-dev} | </span>
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199
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<pre style="margin: 0;">-<span id="LC199" class="line" lang="plaintext"> libxdf | 1 | {imaging-dev} | </span>
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188
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<pre style="margin: 0;">+<span id="LC188" class="line" lang="plaintext"> libvistaio | 1 | {imaging-dev} | </span>
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189
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<pre style="margin: 0;">+<span id="LC189" class="line" lang="plaintext"> logol | 1 | {bio} | </span>
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190
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<pre style="margin: 0;">+<span id="LC190" class="line" lang="plaintext"> nanook | 1 | {bio,covid-19} | </span>
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200
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191
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<pre style="margin: 0;"> <span id="LC191" class="line" lang="plaintext"> ngs-sdk | 1 | {bio-dev} | </span>
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201
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192
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<pre style="margin: 0;"> <span id="LC192" class="line" lang="plaintext"> opensurgsim | 1 | {imaging-dev} | </span>
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202
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<pre style="margin: 0;">-<span id="LC202" class="line" lang="plaintext"> papyrus | 1 | {imaging-dev} | </span>
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203
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193
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<pre style="margin: 0;"> <span id="LC193" class="line" lang="plaintext"> pbcopper | 1 | {bio-dev} | </span>
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194
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<pre style="margin: 0;">+<span id="LC194" class="line" lang="plaintext"> pbdagcon | 1 | {bio} | </span>
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195
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<pre style="margin: 0;">+<span id="LC195" class="line" lang="plaintext"> phipack | 1 | {bio} | </span>
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196
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<pre style="margin: 0;">+<span id="LC196" class="line" lang="plaintext"> plasmidseeker | 1 | {bio} | </span>
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204
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197
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<pre style="margin: 0;"> <span id="LC197" class="line" lang="plaintext"> python-py2bit | 1 | {bio,bio-dev} | </span>
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205
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198
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<pre style="margin: 0;"> <span id="LC198" class="line" lang="plaintext"> python-scitrack | 1 | {covid-19} | </span>
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206
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199
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<pre style="margin: 0;"> <span id="LC199" class="line" lang="plaintext"> q2templates | 1 | {bio} | </span>
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207
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200
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<pre style="margin: 0;"> <span id="LC200" class="line" lang="plaintext"> relion | 1 | {bio} | </span>
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201
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<pre style="margin: 0;"> <span id="LC201" class="line" lang="plaintext"> sift | 1 | {bio} | </span>
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209
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<pre style="margin: 0;">-<span id="LC209" class="line" lang="plaintext"> simpleitk | 1 | {imaging-dev} | </span>
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202
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<pre style="margin: 0;"> <span id="LC202" class="line" lang="plaintext"> thesias | 1 | {bio,covid-19} | </span>
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203
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<pre style="margin: 0;"> <span id="LC203" class="line" lang="plaintext"> trace2dbest | 1 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC212" class="line" lang="plaintext"> v<span class="idiff left right">olpack | 1 | {imaging-dev}</span> | </span>
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204
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<pre style="margin: 0;">+<span id="LC204" class="line" lang="plaintext"> v<span class="idiff left right">elvetoptimiser | 1 | {bio} </span> | </span>
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213
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205
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<pre style="margin: 0;"> <span id="LC205" class="line" lang="plaintext"> wtdbg2 | 1 | {covid-19} | </span>
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214
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206
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<pre style="margin: 0;"> <span id="LC206" class="line" lang="plaintext"> acedb | 0 | {cloud,bio} | </span>
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207
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<pre style="margin: 0;"> <span id="LC207" class="line" lang="plaintext"> augur | 0 | {covid-19,bio} | </span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="220" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="212" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -220,6 +212,7 @@ Last-Update: Thu, 02 Jul 2020 01:42:04 +0000</td>
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212
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<pre style="margin: 0;"> <span id="LC212" class="line" lang="plaintext"> biosyntax | 0 | {bio} | </span>
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213
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<pre style="margin: 0;"> <span id="LC213" class="line" lang="plaintext"> camp | 0 | {imaging-dev} | </span>
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214
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<pre style="margin: 0;"> <span id="LC214" class="line" lang="plaintext"> ctn | 0 | {imaging-dev} | </span>
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215
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<pre style="margin: 0;">+<span id="LC215" class="line" lang="plaintext"> emboss-explorer | 0 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC216" class="line" lang="plaintext"> emmax | 0 | {bio} | </span>
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217
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<pre style="margin: 0;"> <span id="LC217" class="line" lang="plaintext"> fis-gtm | 0 | {his} | </span>
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<pre style="margin: 0;"> <span id="LC218" class="line" lang="plaintext"> kma | 0 | {bio} | </span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="240" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -240,7 +233,9 @@ Last-Update: Thu, 02 Jul 2020 01:42:04 +0000</td>
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240
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233
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<pre style="margin: 0;"> <span id="LC233" class="line" lang="plaintext"> libhmsbeagle | 0 | {bio-dev} | </span>
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241
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234
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<pre style="margin: 0;"> <span id="LC234" class="line" lang="plaintext"> libics | 0 | {imaging-dev,covid-19} | </span>
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<pre style="margin: 0;"> <span id="LC235" class="line" lang="plaintext"> libjloda-java | 0 | {bio-dev} | </span>
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<pre style="margin: 0;">+<span id="LC236" class="line" lang="plaintext"> libmaus2 | 0 | {covid-19,bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC237" class="line" lang="plaintext"> libmems | 0 | {bio-dev} | </span>
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<pre style="margin: 0;">+<span id="LC238" class="line" lang="plaintext"> libmialm | 0 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC239" class="line" lang="plaintext"> libmuscle | 0 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC240" class="line" lang="plaintext"> libncl | 0 | {bio-dev} | </span>
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241
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<pre style="margin: 0;"> <span id="LC241" class="line" lang="plaintext"> libpll | 0 | {bio-dev} | </span>
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<td class="diff-line-num unfold js-unfold new_line" data-linenumber="243" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -248,6 +243,7 @@ Last-Update: Thu, 02 Jul 2020 01:42:04 +0000</td>
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248
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243
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<pre style="margin: 0;"> <span id="LC243" class="line" lang="plaintext"> libqes | 0 | {bio-dev} | </span>
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249
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244
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<pre style="margin: 0;"> <span id="LC244" class="line" lang="plaintext"> libseqlib | 0 | {bio-dev} | </span>
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250
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245
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<pre style="margin: 0;"> <span id="LC245" class="line" lang="plaintext"> libstatgen | 0 | {bio-dev} | </span>
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246
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<pre style="margin: 0;">+<span id="LC246" class="line" lang="plaintext"> libxdf | 0 | {imaging-dev} | </span>
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251
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247
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<pre style="margin: 0;"> <span id="LC247" class="line" lang="plaintext"> metastudent-data | 0 | {bio} | </span>
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252
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248
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<pre style="margin: 0;"> <span id="LC248" class="line" lang="plaintext"> metastudent-data-2 | 0 | {bio} | </span>
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253
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249
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<pre style="margin: 0;"> <span id="LC249" class="line" lang="plaintext"> miaviewit | 0 | {imaging-dev} | </span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="257" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -257,15 +253,17 @@ Last-Update: Thu, 02 Jul 2020 01:42:04 +0000</td>
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257
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253
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<pre style="margin: 0;"> <span id="LC253" class="line" lang="plaintext"> nanosv | 0 | {bio,covid-19} | </span>
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258
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254
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<pre style="margin: 0;"> <span id="LC254" class="line" lang="plaintext"> opencfu | 0 | {laboratory} | </span>
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259
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255
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<pre style="margin: 0;"> <span id="LC255" class="line" lang="plaintext"> orthanc-imagej | 0 | {imaging} | </span>
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256
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<pre style="margin: 0;">+<span id="LC256" class="line" lang="plaintext"> papyrus | 0 | {imaging-dev} | </span>
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257
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<pre style="margin: 0;"> <span id="LC257" class="line" lang="plaintext"> parallel-fastq-dump | 0 | {covid-19} | </span>
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<td class="diff-line-num old_line" data-linenumber="261" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
261
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258
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<pre style="margin: 0;"> <span id="LC258" class="line" lang="plaintext"> pbseqlib | 0 | {bio-dev} | </span>
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<td class="diff-line-num old_line" data-linenumber="262" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
262
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259
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<pre style="margin: 0;"> <span id="LC259" class="line" lang="plaintext"> pilercr | 0 | {bio} | </span>
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<td class="diff-line-num old_line" data-linenumber="263" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
263
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260
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<pre style="margin: 0;"> <span id="LC260" class="line" lang="plaintext"> quicktree | 0 | {bio,covid-19,bio-phylogeny} | </span>
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<pre style="margin: 0;">-<span id="LC264" class="line" lang="plaintext"> relion | 0 | {bio-dev} | </span>
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265
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261
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<pre style="margin: 0;"> <span id="LC261" class="line" lang="plaintext"> relion | 0 | {bio} | </span>
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262
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<pre style="margin: 0;">+<span id="LC262" class="line" lang="plaintext"> relion | 0 | {bio-dev} | </span>
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266
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263
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<pre style="margin: 0;"> <span id="LC263" class="line" lang="plaintext"> sambamba | 0 | {bio} | </span>
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267
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264
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<pre style="margin: 0;"> <span id="LC264" class="line" lang="plaintext"> sbmltoolbox | 0 | {bio-dev} | </span>
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<td class="diff-line-num old_line" data-linenumber="268" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
268
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<pre style="margin: 0;"> <span id="LC265" class="line" lang="plaintext"> seq-gen | 0 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC266" class="line" lang="plaintext"> simpleitk | 0 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC267" class="line" lang="plaintext"> skesa | 0 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC268" class="line" lang="plaintext"> skewer | 0 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC269" class="line" lang="plaintext"> smrtanalysis | 0 | {covid-19,bio} | </span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="275" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="273" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -275,10 +273,11 @@ Last-Update: Thu, 02 Jul 2020 01:42:04 +0000</td>
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<pre style="margin: 0;"> <span id="LC273" class="line" lang="plaintext"> tophat-recondition | 0 | {bio,covid-19} | </span>
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<td class="diff-line-num old_line" data-linenumber="276" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC274" class="line" lang="plaintext"> varna | 0 | {bio} | </span>
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<td class="diff-line-num old_line" data-linenumber="277" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC275" class="line" lang="plaintext"> varscan | 0 | {covid-19,bio} | </span>
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<pre style="margin: 0;">+<span id="LC276" class="line" lang="plaintext"> volpack | 0 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC277" class="line" lang="plaintext"> vtk-dicom | 0 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC278" class="line" lang="plaintext"> bustools | -1 | {bio,covid-19} | </span>
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<td class="diff-line-num old_line" data-linenumber="280" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC279" class="line" lang="plaintext"> pycoqc | -1 | {covid-19,bio} | </span>
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<td class="diff-line-num old_line" data-linenumber="281" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC280" class="line" lang="plaintext"> shovill | -1 | {bio,covid-19} | </span>
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<pre style="margin: 0;"> <span id="LC281" class="line" lang="plaintext"> yanagiba | -1 | {bio,covid-19} | </span>
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<pre style="margin: 0;">-<span id="LC283" class="line" lang="plaintext">(30<span class="idiff left right">7</span> rows)</span>
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<pre style="margin: 0;">+<span id="LC282" class="line" lang="plaintext">(30<span class="idiff left right">6</span> rows)</span>
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<pre style="margin: 0;"> <span id="LC283" class="line" lang="plaintext"></span></pre>
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