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<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/med-team/community/helper-scripts">Debian Med / community / helper-scripts</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/community/helper-scripts/-/commit/c124eb53c5afe9abe1e560fd26a8380d63d091ce">c124eb53</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-07-03T13:44:03+00:00</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">automatic update
</pre>
</li>
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<h4>2 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#f6d55d24085decec06151dd27f30199089d856ca">
debian-med-tests.txt
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</li>
<li class="file-stats">
<a href="#2654e31016bcee9bbe05d462121706cc8ed368af">
outdated_med-packages.txt
</a>
</li>
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<h4>Changes:</h4>
<li id="f6d55d24085decec06151dd27f30199089d856ca">
<a href="https://salsa.debian.org/med-team/community/helper-scripts/-/commit/c124eb53c5afe9abe1e560fd26a8380d63d091ce#f6d55d24085decec06151dd27f30199089d856ca"><strong>debian-med-tests.txt</strong></a>
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="plaintext">Last-Update: Fri, 03 Jul 2020 <span class="idiff left right">01:42:04</span> +0000</span>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">Last-Update: Fri, 03 Jul 2020 <span class="idiff left right">13:42:03</span> +0000</span>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext"> Source | Vote | Tasks | Tags </span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext">-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------</span>
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<pre style="margin: 0;">-<span id="LC5" class="line" lang="plaintext"> dcmtk | 18<span class="idiff left right">2</span> | {covid-19,imaging} | </span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext"> dcmtk | 18<span class="idiff left right">3</span> | {covid-19,imaging} | </span>
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="plaintext"> orthanc | 94 | {covid-19,imaging,practice} | </span>
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<pre style="margin: 0;">-<span id="LC7" class="line" lang="plaintext"> gdcm | 4<span class="idiff left right">6</span> | {imaging-dev} | </span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext"> gdcm | 4<span class="idiff left right">9</span> | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC8" class="line" lang="plaintext"> orthanc-wsi | 44 | {his,practice,covid-19,laboratory,imaging,oncology} | </span>
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<pre style="margin: 0;">-<span id="LC9" class="line" lang="plaintext"> htsjdk | 3<span class="idiff left right">4</span> | {bio-dev} | </span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="plaintext"> htsjdk | 3<span class="idiff left right">2</span> | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="plaintext"> dcm2niix | 22 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="plaintext"> dicomscope | 21 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC12" class="line" lang="plaintext"> dicom3tools | 20 | {imaging} | </span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="14" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -14,26 +14,25 @@ Last-Update: Fri, 03 Jul 2020 01:42:04 +0000</td>
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<pre style="margin: 0;"> <span id="LC14" class="line" lang="plaintext"> ngs-sdk | 17 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC15" class="line" lang="plaintext"> gdcm | 16 | {covid-19,imaging} | </span>
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<pre style="margin: 0;"> <span id="LC16" class="line" lang="plaintext"> gdcm | 13 | {imaging-dev} | </span>
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<pre style="margin: 0;">-<span id="LC17" class="line" lang="plaintext"> insighttoolkit4 | 1<span class="idiff left right">2</span> | {imaging-dev} | </span>
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="plaintext"> insighttoolkit4 | 1<span class="idiff left right">3</span> | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC18" class="line" lang="plaintext"> invesalius | 12 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC19" class="line" lang="plaintext"> jebl2 | 11 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC20" class="line" lang="plaintext"> minc-tools | 11 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC21" class="line" lang="plaintext"> dicompyler | 9 | {oncology} | </span>
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<pre style="margin: 0;">+<span id="LC22" class="line" lang="plaintext"> ngs-sdk | 9 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC23" class="line" lang="plaintext"> pixelmed | 9 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC24" class="line" lang="plaintext"> psychopy | 9 | {psychology} | </span>
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<pre style="margin: 0;"> <span id="LC25" class="line" lang="plaintext"> adun.app | 8 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC26" class="line" lang="plaintext"> biosig4c++ | 8 | {physics,imaging} | </span>
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<pre style="margin: 0;"> <span id="LC27" class="line" lang="plaintext"> libdivsufsort | 8 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC28" class="line" lang="plaintext"> melting | 8 | {bio,cloud} | </span>
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<pre style="margin: 0;">-<span id="LC27" class="line" lang="plaintext"> ngs-sdk | 8 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC29" class="line" lang="plaintext"> openslide | 8 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC30" class="line" lang="plaintext"> plastimatch | 8 | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC30" class="line" lang="plaintext"> pymia | 8 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC31" class="line" lang="plaintext"> vtk-dicom | 8 | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC32" class="line" lang="plaintext"> biosig4c++ | 7 | {physics,imaging} | </span>
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<pre style="margin: 0;"> <span id="LC32" class="line" lang="plaintext"> lagan | 7 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC33" class="line" lang="plaintext"> libminc | 7 | {imaging-dev} | </span>
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<pre style="margin: 0;">-<span id="LC35" class="line" lang="plaintext"> maqview | 7 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC34" class="line" lang="plaintext"> orthanc-webviewer | 7 | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC35" class="line" lang="plaintext"> pymia | 7 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC36" class="line" lang="plaintext"> stacks | 7 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC37" class="line" lang="plaintext"> treeview | 7 | {bio-phylogeny,bio} | </span>
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<pre style="margin: 0;"> <span id="LC38" class="line" lang="plaintext"> ea-utils | 6 | {bio} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -43,7 +42,6 @@ Last-Update: Fri, 03 Jul 2020 01:42:04 +0000</td>
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<pre style="margin: 0;"> <span id="LC42" class="line" lang="plaintext"> obitools | 6 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC43" class="line" lang="plaintext"> orthanc-dicomweb | 6 | {imaging,covid-19} | </span>
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<pre style="margin: 0;"> <span id="LC44" class="line" lang="plaintext"> paraclu | 6 | {cloud,bio} | </span>
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<pre style="margin: 0;">-<span id="LC46" class="line" lang="plaintext"> seqsero | 6 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC45" class="line" lang="plaintext"> anfo | 5 | {bio,cloud} | </span>
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<pre style="margin: 0;"> <span id="LC46" class="line" lang="plaintext"> biojava-live | 5 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC47" class="line" lang="plaintext"> fastlink | 5 | {cloud,bio} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -51,11 +49,13 @@ Last-Update: Fri, 03 Jul 2020 01:42:04 +0000</td>
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<pre style="margin: 0;"> <span id="LC49" class="line" lang="plaintext"> jaligner | 5 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC50" class="line" lang="plaintext"> mlv-smile | 5 | {bio,cloud} | </span>
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<pre style="margin: 0;"> <span id="LC51" class="line" lang="plaintext"> orthanc-mysql | 5 | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC52" class="line" lang="plaintext"> seqsero | 5 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC53" class="line" lang="plaintext"> sibsim4 | 5 | {bio,cloud} | </span>
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<pre style="margin: 0;"> <span id="LC54" class="line" lang="plaintext"> sigma-align | 5 | {bio-phylogeny,cloud,bio} | </span>
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<pre style="margin: 0;"> <span id="LC55" class="line" lang="plaintext"> staden | 5 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC56" class="line" lang="plaintext"> zalign | 5 | {cloud,bio} | </span>
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<pre style="margin: 0;"> <span id="LC57" class="line" lang="plaintext"> bart-view | 4 | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC58" class="line" lang="plaintext"> biomaj3-cli | 4 | {cloud} | </span>
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<pre style="margin: 0;"> <span id="LC59" class="line" lang="plaintext"> gatb-core | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC60" class="line" lang="plaintext"> microbegps | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC61" class="line" lang="plaintext"> mipe | 4 | {cloud,bio} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -63,18 +63,18 @@ Last-Update: Fri, 03 Jul 2020 01:42:04 +0000</td>
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<pre style="margin: 0;"> <span id="LC63" class="line" lang="plaintext"> ncbi-seg | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC64" class="line" lang="plaintext"> neobio | 4 | {cloud,bio} | </span>
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<pre style="margin: 0;"> <span id="LC65" class="line" lang="plaintext"> orthanc-postgresql | 4 | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC66" class="line" lang="plaintext"> pal2nal | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC66" class="line" lang="plaintext"> phyutility | 4 | {bio,cloud} | </span>
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<pre style="margin: 0;"> <span id="LC67" class="line" lang="plaintext"> piler | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC68" class="line" lang="plaintext"> qrisk2 | 4 | {practice} | </span>
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<pre style="margin: 0;"> <span id="LC69" class="line" lang="plaintext"> salmon | 4 | {bio,covid-19} | </span>
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<pre style="margin: 0;">+<span id="LC70" class="line" lang="plaintext"> seqmagick | 4 | {covid-19,bio} | </span>
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<pre style="margin: 0;"> <span id="LC71" class="line" lang="plaintext"> spread-phy | 4 | {bio-phylogeny,bio} | </span>
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<pre style="margin: 0;"> <span id="LC72" class="line" lang="plaintext"> squizz | 4 | {bio,cloud} | </span>
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<pre style="margin: 0;"> <span id="LC73" class="line" lang="plaintext"> tnseq-transit | 4 | {covid-19,bio} | </span>
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<pre style="margin: 0;"> <span id="LC74" class="line" lang="plaintext"> transtermhp | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC75" class="line" lang="plaintext"> ampliconnoise | 3 | {cloud,bio} | </span>
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<pre style="margin: 0;"> <span id="LC76" class="line" lang="plaintext"> bandage | 3 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC77" class="line" lang="plaintext"> biomaj3-<span class="idiff left right">cli | 3 | {cloud}</span> | </span>
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<pre style="margin: 0;">+<span id="LC77" class="line" lang="plaintext"> biomaj3-<span class="idiff left right">daemon | 3 | {bio} </span> | </span>
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<pre style="margin: 0;"> <span id="LC78" class="line" lang="plaintext"> brig | 3 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC79" class="line" lang="plaintext"> busco | 3 | {covid-19,bio} | </span>
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<pre style="margin: 0;"> <span id="LC80" class="line" lang="plaintext"> delly | 3 | {bio,covid-19} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -106,16 +106,15 @@ Last-Update: Fri, 03 Jul 2020 01:42:04 +0000</td>
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<pre style="margin: 0;"> <span id="LC106" class="line" lang="plaintext"> saint | 3 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC107" class="line" lang="plaintext"> scythe | 3 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC108" class="line" lang="plaintext"> segemehl | 3 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC109" class="line" lang="plaintext"> seqmagick | 3 | {covid-19,bio} | </span>
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<pre style="margin: 0;"> <span id="LC109" class="line" lang="plaintext"> snap-aligner | 3 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC110" class="line" lang="plaintext"> tracetuner | 3 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC111" class="line" lang="plaintext"> tvc | 3 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC112" class="line" lang="plaintext"> alter-sequence-alignment | 2 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC113" class="line" lang="plaintext"> arden | 2 | {bio,cloud} | </span>
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<pre style="margin: 0;"> <span id="LC114" class="line" lang="plaintext"> assemblytics | 2 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC115" class="line" lang="plaintext"> baitfisher | 2 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC116" class="line" lang="plaintext"> beast2-mcmc | 2 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC117" class="line" lang="plaintext"> beast-mcmc | 2 | {bio-phylogeny,bio} | </span>
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<pre style="margin: 0;">-<span id="LC118" class="line" lang="plaintext"> biomaj3-daemon | 2 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC118" class="line" lang="plaintext"> bio-rainbow | 2 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC119" class="line" lang="plaintext"> bio-tradis | 2 | {bio-dev,bio} | </span>
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120
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<pre style="margin: 0;"> <span id="LC120" class="line" lang="plaintext"> bitseq | 2 | {bio} | </span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="143" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -143,7 +142,6 @@ Last-Update: Fri, 03 Jul 2020 01:42:04 +0000</td>
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142
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<pre style="margin: 0;"> <span id="LC142" class="line" lang="plaintext"> murasaki | 2 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC143" class="line" lang="plaintext"> ncbi-vdb | 2 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC144" class="line" lang="plaintext"> nutsqlite | 2 | {tools} | </span>
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<pre style="margin: 0;">-<span id="LC146" class="line" lang="plaintext"> openslide | 2 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC145" class="line" lang="plaintext"> oscar | 2 | {practice,tools,data} | </span>
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<pre style="margin: 0;"> <span id="LC146" class="line" lang="plaintext"> patman | 2 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC147" class="line" lang="plaintext"> phast | 2 | {bio} | </span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="171" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -171,7 +169,6 @@ Last-Update: Fri, 03 Jul 2020 01:42:04 +0000</td>
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<pre style="margin: 0;"> <span id="LC169" class="line" lang="plaintext"> suitename | 2 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC170" class="line" lang="plaintext"> surankco | 2 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC171" class="line" lang="plaintext"> sweed | 2 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC174" class="line" lang="plaintext"> tvc | 2 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC172" class="line" lang="plaintext"> yaha | 2 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC173" class="line" lang="plaintext"> atropos | 1 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC174" class="line" lang="plaintext"> biosig4c++ | 1 | {physics,imaging-dev} | </span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="189" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -189,6 +186,7 @@ Last-Update: Fri, 03 Jul 2020 01:42:04 +0000</td>
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189
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186
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<pre style="margin: 0;"> <span id="LC186" class="line" lang="plaintext"> logol | 1 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC187" class="line" lang="plaintext"> nanook | 1 | {bio,covid-19} | </span>
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<pre style="margin: 0;"> <span id="LC188" class="line" lang="plaintext"> ngs-sdk | 1 | {bio-dev} | </span>
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<pre style="margin: 0;">+<span id="LC189" class="line" lang="plaintext"> openslide | 1 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC190" class="line" lang="plaintext"> opensurgsim | 1 | {imaging-dev} | </span>
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191
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<pre style="margin: 0;"> <span id="LC191" class="line" lang="plaintext"> pbcopper | 1 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC192" class="line" lang="plaintext"> pbdagcon | 1 | {bio} | </span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="279" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="277" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -279,5 +277,5 @@ Last-Update: Fri, 03 Jul 2020 01:42:04 +0000</td>
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277
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<pre style="margin: 0;"> <span id="LC277" class="line" lang="plaintext"> pycoqc | -1 | {covid-19,bio} | </span>
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280
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<pre style="margin: 0;"> <span id="LC278" class="line" lang="plaintext"> shovill | -1 | {bio,covid-19} | </span>
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<td class="diff-line-num old_line" data-linenumber="281" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC279" class="line" lang="plaintext"> yanagiba | -1 | {bio,covid-19} | </span>
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<pre style="margin: 0;">-<span id="LC282" class="line" lang="plaintext">(30<span class="idiff left right">6</span> rows)</span>
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<pre style="margin: 0;">+<span id="LC280" class="line" lang="plaintext">(30<span class="idiff left right">4</span> rows)</span>
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<pre style="margin: 0;"> <span id="LC281" class="line" lang="plaintext"></span></pre>
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