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<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/med-team/community/helper-scripts">Debian Med / community / helper-scripts</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/community/helper-scripts/-/commit/b09f3ef6508695ba3beb8c4ab6e2e17b8748718c">b09f3ef6</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-07-04T13:44:06+00:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">automatic update
</pre>
</li>
</ul>
<h4>2 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#f6d55d24085decec06151dd27f30199089d856ca">
debian-med-tests.txt
</a>
</li>
<li class="file-stats">
<a href="#2654e31016bcee9bbe05d462121706cc8ed368af">
outdated_med-packages.txt
</a>
</li>
</ul>
<h4>Changes:</h4>
<li id="f6d55d24085decec06151dd27f30199089d856ca">
<a href="https://salsa.debian.org/med-team/community/helper-scripts/-/commit/b09f3ef6508695ba3beb8c4ab6e2e17b8748718c#f6d55d24085decec06151dd27f30199089d856ca"><strong>debian-med-tests.txt</strong></a>
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="plaintext">Last-Update: Sat, 04 Jul 2020 <span class="idiff left right">01</span>:42:04 +0000</span>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">Last-Update: Sat, 04 Jul 2020 <span class="idiff left right">13</span>:42:04 +0000</span>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext"> Source | Vote | Tasks | Tags </span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext">-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------</span>
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<pre style="margin: 0;">-<span id="LC5" class="line" lang="plaintext"> dcmtk | 18<span class="idiff left right">3</span> | {covid-19,imaging} | </span>
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<pre style="margin: 0;">-<span id="LC6" class="line" lang="plaintext"> orthanc | 9<span class="idiff left right">4</span> | {covid-19,imaging,practice} | </span>
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<pre style="margin: 0;">-<span id="LC7" class="line" lang="plaintext"> gdcm | 4<span class="idiff left right">9</span> | {imaging-dev} | </span>
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<pre style="margin: 0;">-<span id="LC8" class="line" lang="plaintext"> orthanc-wsi | 4<span class="idiff left right">4</span> | {his,practice,covid-19,laboratory,imaging,oncology} | </span>
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<pre style="margin: 0;">-<span id="LC9" class="line" lang="plaintext"> htsjdk | 3<span class="idiff left right">2</span> | {bio-dev} | </span>
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<pre style="margin: 0;">-<span id="LC10" class="line" lang="plaintext"> dcm2niix | 2<span class="idiff left right">2</span> | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext"> dcmtk | 18<span class="idiff left right">2</span> | {covid-19,imaging} | </span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext"> orthanc | 9<span class="idiff left right">6</span> | {covid-19,imaging,practice} | </span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext"> gdcm | 4<span class="idiff left right">6</span> | {imaging-dev} | </span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext"> orthanc-wsi | 4<span class="idiff left right">5</span> | {his,practice,covid-19,laboratory,imaging,oncology} | </span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="plaintext"> htsjdk | 3<span class="idiff left right">3</span> | {bio-dev} | </span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="plaintext"> dcm2niix | 2<span class="idiff left right">1</span> | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="plaintext"> dicomscope | 21 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC12" class="line" lang="plaintext"> dicom3tools | 20 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC13" class="line" lang="plaintext"> gnumed-server | 19 | {practice,covid-19} | </span>
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<pre style="margin: 0;"> <span id="LC14" class="line" lang="plaintext"> ngs-sdk | 17 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC15" class="line" lang="plaintext"> gdcm | 16 | {covid-19,imaging} | </span>
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<pre style="margin: 0;"> <span id="LC16" class="line" lang="plaintext"> gdcm | 13 | {imaging-dev} | </span>
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<pre style="margin: 0;">-<span id="LC17" class="line" lang="plaintext"> insighttoolkit4 | 1<span class="idiff left right">3</span> | {imaging-dev} | </span>
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="plaintext"> insighttoolkit4 | 1<span class="idiff left right">2</span> | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC18" class="line" lang="plaintext"> invesalius | 12 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC19" class="line" lang="plaintext"> jebl2 | 11 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC20" class="line" lang="plaintext"> minc-tools | 11 | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC21" class="line" lang="plaintext"> pixelmed | 10 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC22" class="line" lang="plaintext"> dicompyler | 9 | {oncology} | </span>
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<pre style="margin: 0;"> <span id="LC23" class="line" lang="plaintext"> ngs-sdk | 9 | {bio-dev} | </span>
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<pre style="margin: 0;">-<span id="LC23" class="line" lang="plaintext"> pixelmed | 9 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC24" class="line" lang="plaintext"> psychopy | 9 | {psychology} | </span>
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<pre style="margin: 0;">-<span id="LC25" class="line" lang="plaintext"> adun.app | 8 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC25" class="line" lang="plaintext"> biosig4c++ | 8 | {physics,imaging} | </span>
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<pre style="margin: 0;"> <span id="LC26" class="line" lang="plaintext"> libdivsufsort | 8 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC27" class="line" lang="plaintext"> melting | 8 | {bio,cloud} | </span>
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<pre style="margin: 0;"> <span id="LC28" class="line" lang="plaintext"> openslide | 8 | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC29" class="line" lang="plaintext"> orthanc-webviewer | 8 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC30" class="line" lang="plaintext"> plastimatch | 8 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC31" class="line" lang="plaintext"> vtk-dicom | 8 | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC32" class="line" lang="plaintext"> adun.app | 7 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC33" class="line" lang="plaintext"> king-probe | 7 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC34" class="line" lang="plaintext"> lagan | 7 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC33" class="line" lang="plaintext"> libminc | 7 | {imaging-dev} | </span>
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<pre style="margin: 0;">-<span id="LC34" class="line" lang="plaintext"> orthanc-webviewer | 7 | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC35" class="line" lang="plaintext"> orthanc-dicomweb | 7 | {imaging,covid-19} | </span>
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<pre style="margin: 0;"> <span id="LC36" class="line" lang="plaintext"> pymia | 7 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC37" class="line" lang="plaintext"> stacks | 7 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC38" class="line" lang="plaintext"> treeview | 7 | {bio-phylogeny,bio} | </span>
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<pre style="margin: 0;"> <span id="LC39" class="line" lang="plaintext"> ea-utils | 6 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC40" class="line" lang="plaintext"> king | 6 | {imaging,typesetting} | </span>
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<pre style="margin: 0;">-<span id="LC40" class="line" lang="plaintext"> <span class="idiff left right">king-probe | 6 | {bio} </span> | </span>
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<pre style="margin: 0;">+<span id="LC41" class="line" lang="plaintext"> <span class="idiff left right">libminc | 6 | {imaging-dev}</span> | </span>
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<pre style="margin: 0;"> <span id="LC42" class="line" lang="plaintext"> librg-utils-perl | 6 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC43" class="line" lang="plaintext"> obitools | 6 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC43" class="line" lang="plaintext"> orthanc-<span class="idiff left right">dicomweb | 6 | {imaging,covid-19}</span> | </span>
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<pre style="margin: 0;">+<span id="LC44" class="line" lang="plaintext"> orthanc-<span class="idiff left right">mysql | 6 | {imaging} </span> | </span>
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<pre style="margin: 0;"> <span id="LC45" class="line" lang="plaintext"> paraclu | 6 | {cloud,bio} | </span>
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<pre style="margin: 0;"> <span id="LC46" class="line" lang="plaintext"> anfo | 5 | {bio,cloud} | </span>
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<pre style="margin: 0;"> <span id="LC47" class="line" lang="plaintext"> biojava-live | 5 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC48" class="line" lang="plaintext"> fastlink | 5 | {cloud,bio} | </span>
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<pre style="margin: 0;"> <span id="LC49" class="line" lang="plaintext"> getdata | 5 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC49" class="line" lang="plaintext"> jaligner | 5 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC50" class="line" lang="plaintext"> mlv-smile | 5 | {bio,cloud} | </span>
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<pre style="margin: 0;">-<span id="LC51" class="line" lang="plaintext"> orthanc-<span class="idiff left right">mysql </span> | 5 | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC51" class="line" lang="plaintext"> orthanc-<span class="idiff left right">postgresql</span> | 5 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC52" class="line" lang="plaintext"> seqsero | 5 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC53" class="line" lang="plaintext"> sibsim4 | 5 | {bio,cloud} | </span>
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<pre style="margin: 0;"> <span id="LC54" class="line" lang="plaintext"> sigma-align | 5 | {bio-phylogeny,cloud,bio} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -62,12 +62,12 @@ Last-Update: Sat, 04 Jul 2020 01:42:04 +0000</td>
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<pre style="margin: 0;"> <span id="LC62" class="line" lang="plaintext"> mrs | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC63" class="line" lang="plaintext"> ncbi-seg | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC64" class="line" lang="plaintext"> neobio | 4 | {cloud,bio} | </span>
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<pre style="margin: 0;">-<span id="LC65" class="line" lang="plaintext"> orthanc-postgresql | 4 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC65" class="line" lang="plaintext"> phyutility | 4 | {bio,cloud} | </span>
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<pre style="margin: 0;"> <span id="LC66" class="line" lang="plaintext"> piler | 4 | {bio} | </span>
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67
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<pre style="margin: 0;"> <span id="LC67" class="line" lang="plaintext"> qrisk2 | 4 | {practice} | </span>
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68
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<pre style="margin: 0;"> <span id="LC68" class="line" lang="plaintext"> salmon | 4 | {bio,covid-19} | </span>
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69
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<pre style="margin: 0;"> <span id="LC69" class="line" lang="plaintext"> seqmagick | 4 | {covid-19,bio} | </span>
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<pre style="margin: 0;">+<span id="LC70" class="line" lang="plaintext"> snap-aligner | 4 | {bio} | </span>
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71
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<pre style="margin: 0;"> <span id="LC71" class="line" lang="plaintext"> spread-phy | 4 | {bio-phylogeny,bio} | </span>
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72
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72
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<pre style="margin: 0;"> <span id="LC72" class="line" lang="plaintext"> squizz | 4 | {bio,cloud} | </span>
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<pre style="margin: 0;"> <span id="LC73" class="line" lang="plaintext"> tnseq-transit | 4 | {covid-19,bio} | </span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="106" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="106" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -106,7 +106,6 @@ Last-Update: Sat, 04 Jul 2020 01:42:04 +0000</td>
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106
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106
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<pre style="margin: 0;"> <span id="LC106" class="line" lang="plaintext"> saint | 3 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC107" class="line" lang="plaintext"> scythe | 3 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC108" class="line" lang="plaintext"> segemehl | 3 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC109" class="line" lang="plaintext"> snap-aligner | 3 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC109" class="line" lang="plaintext"> tracetuner | 3 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC110" class="line" lang="plaintext"> tvc | 3 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC111" class="line" lang="plaintext"> alter-sequence-alignment | 2 | {bio} | </span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="277" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -277,5 +276,5 @@ Last-Update: Sat, 04 Jul 2020 01:42:04 +0000</td>
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<pre style="margin: 0;"> <span id="LC276" class="line" lang="plaintext"> pycoqc | -1 | {covid-19,bio} | </span>
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<pre style="margin: 0;"> <span id="LC277" class="line" lang="plaintext"> shovill | -1 | {bio,covid-19} | </span>
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<pre style="margin: 0;"> <span id="LC278" class="line" lang="plaintext"> yanagiba | -1 | {bio,covid-19} | </span>
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280
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<pre style="margin: 0;">-<span id="LC280" class="line" lang="plaintext">(30<span class="idiff left right">4</span> rows)</span>
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<pre style="margin: 0;">+<span id="LC279" class="line" lang="plaintext">(30<span class="idiff left right">3</span> rows)</span>
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<pre style="margin: 0;"> <span id="LC280" class="line" lang="plaintext"></span></pre>
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