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<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/med-team/rosa">Debian Med / rosa</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/rosa/-/commit/1ba6ec9a76fee46bb640b20cd8a0126f39812538">1ba6ec9a</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-07-04T08:23:13+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Add missing Build-Depends: dh-r
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/rosa/-/commit/d46c02fd7252e25892b7eba54180051db35bca3f">d46c02fd</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-07-04T08:24:19+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Debian Med team maintenance
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/rosa/-/commit/f99f2077d66c427e6937013af855eecfd960edc0">f99f2077</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-07-04T08:36:31+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">No first person in description
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/rosa/-/commit/67772e63f7625333f062d6f018bca20ec0d20772">67772e63</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-07-04T08:38:46+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">DEP3
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/rosa/-/commit/7242c4908c80d845938d7e0b124f7fd8029eaea4">7242c490</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-07-04T08:40:03+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Make distinct descriptions
</pre>
</li>
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<h4>3 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
</a>
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<li class="file-stats">
<a href="#95ddc844fe5751698d707293cae4ddb561d0c221">
debian/patches/AdjustSetup2to3.patch
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<li class="file-stats">
<a href="#35bfb9456b4b5c172a21c6cdbbc1234be20e1d8b">
debian/patches/duplicateURLinDESCRIPTION.patch
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</li>
</ul>
<h4>Changes:</h4>
<li id="58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
<a href="https://salsa.debian.org/med-team/rosa/-/compare/904cb710e752851dd96c9bc1d15dbed30cba69d6...7242c4908c80d845938d7e0b124f7fd8029eaea4#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2"><strong>debian/control</strong></a>
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<pre style="margin: 0;"> <span id="LC1" class="line" lang="plaintext">Source: rosa</span>
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="plaintext">Section: science</span>
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<td class="diff-line-num new_line" data-linenumber="3" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext">Priority: optional</span>
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<td class="diff-line-num new_line old" data-linenumber="4" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC4" class="line" lang="plaintext">Maintainer: Steffen Moeller <moeller@debian.org></span>
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<td class="diff-line-num new new_line" data-linenumber="4" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="plaintext">Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org></span>
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<td class="diff-line-num new new_line" data-linenumber="5" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext">Uploaders: Steffen Moeller <moeller@debian.org></span>
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="plaintext">Build-Depends: debhelper-compat (= 12),</span>
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<td class="diff-line-num new_line" data-linenumber="7" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="plaintext"> dh-python,</span>
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<td class="diff-line-num new old_line" data-linenumber="7" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="8" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext"> dh-r,</span>
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<td class="diff-line-num old_line" data-linenumber="7" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="diff-line-num new_line" data-linenumber="9" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="plaintext"> python3-setuptools,</span>
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<td class="diff-line-num old_line" data-linenumber="8" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="diff-line-num new_line" data-linenumber="10" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="plaintext"> python3-all,</span>
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<td class="diff-line-num old_line" data-linenumber="9" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="diff-line-num new_line" data-linenumber="11" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="plaintext"> r-cran-lsd</span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="21" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="23" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -21,7 +23,7 @@ Depends: ${R:Depends},</td>
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<td class="diff-line-num new_line" data-linenumber="23" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC23" class="line" lang="plaintext"> r-cran-lsd</span>
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<td class="diff-line-num old_line" data-linenumber="22" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="diff-line-num new_line" data-linenumber="24" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC24" class="line" lang="plaintext">Suggests: ${R:Suggests}</span>
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<td class="diff-line-num old_line" data-linenumber="23" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="diff-line-num new_line" data-linenumber="25" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC25" class="line" lang="plaintext">Description: Removal of Spurious Antisense in biological RNA sequences</span>
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<td class="diff-line-num old old_line" data-linenumber="24" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<td class="diff-line-num new_line old" data-linenumber="26" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC24" class="line" lang="plaintext"> In stranded RNA-Seq experiments <span class="idiff left right">we have the opportunity</span> to detect and</span>
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<td class="diff-line-num new new_line" data-linenumber="26" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC26" class="line" lang="plaintext"> In stranded RNA-Seq experiments <span class="idiff left right">it is possible</span> to detect and</span>
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<td class="diff-line-num new_line" data-linenumber="27" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC27" class="line" lang="plaintext"> measure antisense transcription, important since antisense transcripts</span>
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<td class="diff-line-num old_line" data-linenumber="26" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="diff-line-num new_line" data-linenumber="28" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC28" class="line" lang="plaintext"> impact gene transcription in several different ways. Stranded RNA-Seq</span>
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<td class="diff-line-num old_line" data-linenumber="27" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="diff-line-num new_line" data-linenumber="29" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC29" class="line" lang="plaintext"> determines the strand from which an RNA fragment originates, and so can</span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="50" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="52" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -50,11 +52,12 @@ Description: Removal of Spurious Antisense in biological RNA sequences</td>
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<pre style="margin: 0;"> <span id="LC52" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC53" class="line" lang="plaintext">Package: python3-rosa</span>
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<pre style="margin: 0;"> <span id="LC54" class="line" lang="plaintext">Architecture: all</span>
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<pre style="margin: 0;">+<span id="LC55" class="line" lang="plaintext">Section: python</span>
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<pre style="margin: 0;"> <span id="LC56" class="line" lang="plaintext">Depends: ${python3:Depends},</span>
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<pre style="margin: 0;"> <span id="LC57" class="line" lang="plaintext"> ${misc:Depends}</span>
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<pre style="margin: 0;"> <span id="LC58" class="line" lang="plaintext">Recommends: rosa</span>
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<pre style="margin: 0;">-<span id="LC56" class="line" lang="plaintext">Description: Removal of Spurious Antisense in biological RNA sequences</span>
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<pre style="margin: 0;">-<span id="LC57" class="line" lang="plaintext"> In stranded RNA-Seq experiments <span class="idiff left right">we have the opportunity</span> to detect and</span>
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<pre style="margin: 0;">+<span id="LC59" class="line" lang="plaintext">Description: Removal of Spurious Antisense in biological RNA sequences<span class="idiff left right"> (Python3)</span></span>
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<pre style="margin: 0;">+<span id="LC60" class="line" lang="plaintext"> In stranded RNA-Seq experiments <span class="idiff left right">it is possible</span> to detect and</span>
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<pre style="margin: 0;"> <span id="LC61" class="line" lang="plaintext"> measure antisense transcription, important since antisense transcripts</span>
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<pre style="margin: 0;"> <span id="LC62" class="line" lang="plaintext"> impact gene transcription in several different ways. Stranded RNA-Seq</span>
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<pre style="margin: 0;"> <span id="LC63" class="line" lang="plaintext"> determines the strand from which an RNA fragment originates, and so can</span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -79,3 +82,5 @@ Description: Removal of Spurious Antisense in biological RNA sequences</td>
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<pre style="margin: 0;"> <span id="LC82" class="line" lang="plaintext"> the antisense counts based on the ratio. Where a gene-specific estimate</span>
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<pre style="margin: 0;"> <span id="LC83" class="line" lang="plaintext"> is available for a gene, it will be used in preference to the global</span>
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<pre style="margin: 0;"> <span id="LC84" class="line" lang="plaintext"> estimate obtained from either spike-ins or spliced reads.</span>
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<pre style="margin: 0;">+<span id="LC85" class="line" lang="plaintext"> .</span>
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<pre style="margin: 0;">+<span id="LC86" class="line" lang="plaintext"> This package contains the Python3 module.</span></pre>
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<li id="95ddc844fe5751698d707293cae4ddb561d0c221">
<a href="https://salsa.debian.org/med-team/rosa/-/compare/904cb710e752851dd96c9bc1d15dbed30cba69d6...7242c4908c80d845938d7e0b124f7fd8029eaea4#95ddc844fe5751698d707293cae4ddb561d0c221"><strong>debian/patches/AdjustSetup2to3.patch</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="diff"><span class="p">Author: Steffen Möller</span></span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="diff"><span class="p">Last-Update: 2020-07-03 21:14:31 +0200</span></span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="diff"><span class="p">Description: Enforce Python3</span></span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="diff"></span>
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="diff">Index: rosa-1.0/python/setup.py</span>
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="diff"><span class="gh" style="color: #999;">===================================================================</span></span>
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- rosa-1.0.orig/python/setup.py</span></span>
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<li id="35bfb9456b4b5c172a21c6cdbbc1234be20e1d8b">
<a href="https://salsa.debian.org/med-team/rosa/-/compare/904cb710e752851dd96c9bc1d15dbed30cba69d6...7242c4908c80d845938d7e0b124f7fd8029eaea4#35bfb9456b4b5c172a21c6cdbbc1234be20e1d8b"><strong>debian/patches/duplicateURLinDESCRIPTION.patch</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="diff"><span class="p">Author: Steffen Möller</span></span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="diff"><span class="p">Last-Update: 2020-07-03 21:14:31 +0200</span></span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="diff"><span class="p">Description: Remove duplicates of fields in DESCRIPTION</span></span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="diff"></span>
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="diff">Index: rosa-1.0/DESCRIPTION</span>
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="diff"><span class="gh" style="color: #999;">===================================================================</span></span>
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- rosa-1.0.orig/DESCRIPTION</span></span>
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