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<h3>
Steffen Möller pushed to branch upstream
at <a href="https://salsa.debian.org/med-team/nanoplot">Debian Med / nanoplot</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/nanoplot/-/commit/a57217283d8df071553c20c22e57624029d1f75d">a5721728</a></strong>
<div>
<span>by Steffen Moeller</span>
<i>at 2020-07-05T22:14:55+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 1.30.1</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/nanoplot/-/commit/57b98e9246eae2217e5a08735febdf7a8702b228">57b98e92</a></strong>
<div>
<span>by Steffen Moeller</span>
<i>at 2020-07-05T22:30:54+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 1.30.1</pre>
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<h4>12 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#0398ccd0f49298b10a3d76a47800d2ebecd49859">
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+
LICENSE
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<li class="file-stats">
<a href="#25a94da7773e5b037a2a7fd18bfbff6556149f1a">
NanoPlot.egg-info/PKG-INFO
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<li class="file-stats">
<a href="#8b9bda71a20c83dd855d105a9ea743e447e051ac">
<span class="deleted-file">
−
NanoPlot.egg-info/SOURCES.txt
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<li class="file-stats">
<a href="#d9c782fa56a1bc8534d84cd139167c489b05e05f">
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−
NanoPlot.egg-info/requires.txt
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<li class="file-stats">
<a href="#7d26833a43d8865f6d9679068f6f9ee7d6e13dcf">
PKG-INFO
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<li class="file-stats">
<a href="#8ec9a00bfd09b3190ac6b22251dbb1aa95a0579d">
README.md
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<li class="file-stats">
<a href="#561b88e19de321ca62c7590bbb350765fb110905">
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+
README.rst
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<li class="file-stats">
<a href="#2c9946377578b6a8fe8f38b82cb11e5d60481930">
nanoplot/NanoPlot.py
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<li class="file-stats">
<a href="#eb7b181afb0820ee0fe4e200d2b9801a9bd4ebc6">
nanoplot/utils.py
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<li class="file-stats">
<a href="#f7afc41a2b57eaf26e6f05f09c573d5ca8a67794">
nanoplot/version.py
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<li class="file-stats">
<a href="#c50263638f3890c64d93ff52ebd1ab67bd90ed5b">
scripts/test.sh
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<li class="file-stats">
<a href="#8e2edce0d507e1297474f25c00cae94258db38d8">
setup.py
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<h4>Changes:</h4>
<li id="0398ccd0f49298b10a3d76a47800d2ebecd49859">
<a href="https://salsa.debian.org/med-team/nanoplot/-/compare/35ac3dd7570ee601d826d8097ce4bb42a18d499b...57b98e9246eae2217e5a08735febdf7a8702b228#0398ccd0f49298b10a3d76a47800d2ebecd49859"><strong>LICENSE</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext"> GNU GENERAL PUBLIC LICENSE</span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="plaintext"> Version 3, 29 June 2007</span>
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3
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="plaintext"> Copyright (C) 2007 Free Software Foundation, Inc. <http://fsf.org/></span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext"> Everyone is permitted to copy and distribute verbatim copies</span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext"> of this license document, but changing it is not allowed.</span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext"> Preamble</span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="plaintext"> The GNU General Public License is a free, copyleft license for</span>
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="plaintext">software and other kinds of works.</span>
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="plaintext"> The licenses for most software and other practical works are designed</span>
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<td class="diff-line-num new new_line" data-linenumber="14" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="plaintext">to take away your freedom to share and change the works. By contrast,</span>
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="plaintext">the GNU General Public License is intended to guarantee your freedom to</span>
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<td class="diff-line-num new new_line" data-linenumber="16" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="plaintext">share and change all versions of a program--to make sure it remains free</span>
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<td class="diff-line-num new new_line" data-linenumber="17" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="plaintext">software for all its users. We, the Free Software Foundation, use the</span>
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<td class="diff-line-num new new_line" data-linenumber="18" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC18" class="line" lang="plaintext">GNU General Public License for most of our software; it applies also to</span>
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<td class="diff-line-num new new_line" data-linenumber="19" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="plaintext">any other work released this way by its authors. You can apply it to</span>
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<pre style="margin: 0;">+<span id="LC20" class="line" lang="plaintext">your programs, too.</span>
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<pre style="margin: 0;">+<span id="LC21" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC22" class="line" lang="plaintext"> When we speak of free software, we are referring to freedom, not</span>
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<pre style="margin: 0;">+<span id="LC23" class="line" lang="plaintext">price. Our General Public Licenses are designed to make sure that you</span>
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<pre style="margin: 0;">+<span id="LC24" class="line" lang="plaintext">have the freedom to distribute copies of free software (and charge for</span>
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<pre style="margin: 0;">+<span id="LC25" class="line" lang="plaintext">them if you wish), that you receive source code or can get it if you</span>
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<pre style="margin: 0;">+<span id="LC26" class="line" lang="plaintext">want it, that you can change the software or use pieces of it in new</span>
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<pre style="margin: 0;">+<span id="LC27" class="line" lang="plaintext">free programs, and that you know you can do these things.</span>
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<pre style="margin: 0;">+<span id="LC28" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC29" class="line" lang="plaintext"> To protect your rights, we need to prevent others from denying you</span>
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<pre style="margin: 0;">+<span id="LC30" class="line" lang="plaintext">these rights or asking you to surrender the rights. Therefore, you have</span>
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<pre style="margin: 0;">+<span id="LC31" class="line" lang="plaintext">certain responsibilities if you distribute copies of the software, or if</span>
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<pre style="margin: 0;">+<span id="LC32" class="line" lang="plaintext">you modify it: responsibilities to respect the freedom of others.</span>
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<pre style="margin: 0;">+<span id="LC33" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC34" class="line" lang="plaintext"> For example, if you distribute copies of such a program, whether</span>
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<pre style="margin: 0;">+<span id="LC35" class="line" lang="plaintext">gratis or for a fee, you must pass on to the recipients the same</span>
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<pre style="margin: 0;">+<span id="LC36" class="line" lang="plaintext">freedoms that you received. You must make sure that they, too, receive</span>
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<pre style="margin: 0;">+<span id="LC37" class="line" lang="plaintext">or can get the source code. And you must show them these terms so they</span>
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<pre style="margin: 0;">+<span id="LC38" class="line" lang="plaintext">know their rights.</span>
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<pre style="margin: 0;">+<span id="LC39" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC40" class="line" lang="plaintext"> Developers that use the GNU GPL protect your rights with two steps:</span>
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<pre style="margin: 0;">+<span id="LC41" class="line" lang="plaintext">(1) assert copyright on the software, and (2) offer you this License</span>
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<pre style="margin: 0;">+<span id="LC42" class="line" lang="plaintext">giving you legal permission to copy, distribute and/or modify it.</span>
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<pre style="margin: 0;">+<span id="LC43" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC44" class="line" lang="plaintext"> For the developers' and authors' protection, the GPL clearly explains</span>
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<pre style="margin: 0;">+<span id="LC45" class="line" lang="plaintext">that there is no warranty for this free software. For both users' and</span>
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<pre style="margin: 0;">+<span id="LC46" class="line" lang="plaintext">authors' sake, the GPL requires that modified versions be marked as</span>
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<pre style="margin: 0;">+<span id="LC47" class="line" lang="plaintext">changed, so that their problems will not be attributed erroneously to</span>
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48
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<pre style="margin: 0;">+<span id="LC48" class="line" lang="plaintext">authors of previous versions.</span>
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49
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<pre style="margin: 0;">+<span id="LC49" class="line" lang="plaintext"></span>
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50
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<pre style="margin: 0;">+<span id="LC50" class="line" lang="plaintext"> Some devices are designed to deny users access to install or run</span>
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51
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<pre style="margin: 0;">+<span id="LC51" class="line" lang="plaintext">modified versions of the software inside them, although the manufacturer</span>
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52
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<pre style="margin: 0;">+<span id="LC52" class="line" lang="plaintext">can do so. This is fundamentally incompatible with the aim of</span>
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53
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<pre style="margin: 0;">+<span id="LC53" class="line" lang="plaintext">protecting users' freedom to change the software. The systematic</span>
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54
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<pre style="margin: 0;">+<span id="LC54" class="line" lang="plaintext">pattern of such abuse occurs in the area of products for individuals to</span>
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55
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<pre style="margin: 0;">+<span id="LC55" class="line" lang="plaintext">use, which is precisely where it is most unacceptable. Therefore, we</span>
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56
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<pre style="margin: 0;">+<span id="LC56" class="line" lang="plaintext">have designed this version of the GPL to prohibit the practice for those</span>
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<pre style="margin: 0;">+<span id="LC57" class="line" lang="plaintext">products. If such problems arise substantially in other domains, we</span>
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58
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<pre style="margin: 0;">+<span id="LC58" class="line" lang="plaintext">stand ready to extend this provision to those domains in future versions</span>
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<pre style="margin: 0;">+<span id="LC59" class="line" lang="plaintext">of the GPL, as needed to protect the freedom of users.</span>
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<pre style="margin: 0;">+<span id="LC60" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC61" class="line" lang="plaintext"> Finally, every program is threatened constantly by software patents.</span>
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62
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<pre style="margin: 0;">+<span id="LC62" class="line" lang="plaintext">States should not allow patents to restrict development and use of</span>
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63
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<pre style="margin: 0;">+<span id="LC63" class="line" lang="plaintext">software on general-purpose computers, but in those that do, we wish to</span>
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64
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<pre style="margin: 0;">+<span id="LC64" class="line" lang="plaintext">avoid the special danger that patents applied to a free program could</span>
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65
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<pre style="margin: 0;">+<span id="LC65" class="line" lang="plaintext">make it effectively proprietary. To prevent this, the GPL assures that</span>
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66
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<pre style="margin: 0;">+<span id="LC66" class="line" lang="plaintext">patents cannot be used to render the program non-free.</span>
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67
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<pre style="margin: 0;">+<span id="LC67" class="line" lang="plaintext"></span>
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68
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<pre style="margin: 0;">+<span id="LC68" class="line" lang="plaintext"> The precise terms and conditions for copying, distribution and</span>
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69
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<pre style="margin: 0;">+<span id="LC69" class="line" lang="plaintext">modification follow.</span>
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70
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<pre style="margin: 0;">+<span id="LC70" class="line" lang="plaintext"></span>
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71
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<pre style="margin: 0;">+<span id="LC71" class="line" lang="plaintext"> TERMS AND CONDITIONS</span>
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72
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<pre style="margin: 0;">+<span id="LC72" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC73" class="line" lang="plaintext"> 0. Definitions.</span>
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<pre style="margin: 0;">+<span id="LC74" class="line" lang="plaintext"></span>
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75
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<pre style="margin: 0;">+<span id="LC75" class="line" lang="plaintext"> "This License" refers to version 3 of the GNU General Public License.</span>
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76
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<pre style="margin: 0;">+<span id="LC76" class="line" lang="plaintext"></span>
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77
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<pre style="margin: 0;">+<span id="LC77" class="line" lang="plaintext"> "Copyright" also means copyright-like laws that apply to other kinds of</span>
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78
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<pre style="margin: 0;">+<span id="LC78" class="line" lang="plaintext">works, such as semiconductor masks.</span>
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79
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<pre style="margin: 0;">+<span id="LC79" class="line" lang="plaintext"></span>
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80
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<pre style="margin: 0;">+<span id="LC80" class="line" lang="plaintext"> "The Program" refers to any copyrightable work licensed under this</span>
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81
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<pre style="margin: 0;">+<span id="LC81" class="line" lang="plaintext">License. Each licensee is addressed as "you". "Licensees" and</span>
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<pre style="margin: 0;">+<span id="LC82" class="line" lang="plaintext">"recipients" may be individuals or organizations.</span>
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83
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<pre style="margin: 0;">+<span id="LC83" class="line" lang="plaintext"></span>
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84
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<pre style="margin: 0;">+<span id="LC84" class="line" lang="plaintext"> To "modify" a work means to copy from or adapt all or part of the work</span>
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85
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<pre style="margin: 0;">+<span id="LC85" class="line" lang="plaintext">in a fashion requiring copyright permission, other than the making of an</span>
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<pre style="margin: 0;">+<span id="LC86" class="line" lang="plaintext">exact copy. The resulting work is called a "modified version" of the</span>
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87
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<pre style="margin: 0;">+<span id="LC87" class="line" lang="plaintext">earlier work or a work "based on" the earlier work.</span>
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<pre style="margin: 0;">+<span id="LC88" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC89" class="line" lang="plaintext"> A "covered work" means either the unmodified Program or a work based</span>
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<pre style="margin: 0;">+<span id="LC90" class="line" lang="plaintext">on the Program.</span>
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<pre style="margin: 0;">+<span id="LC91" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC92" class="line" lang="plaintext"> To "propagate" a work means to do anything with it that, without</span>
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<pre style="margin: 0;">+<span id="LC93" class="line" lang="plaintext">permission, would make you directly or secondarily liable for</span>
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<pre style="margin: 0;">+<span id="LC94" class="line" lang="plaintext">infringement under applicable copyright law, except executing it on a</span>
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<pre style="margin: 0;">+<span id="LC95" class="line" lang="plaintext">computer or modifying a private copy. Propagation includes copying,</span>
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<pre style="margin: 0;">+<span id="LC96" class="line" lang="plaintext">distribution (with or without modification), making available to the</span>
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<pre style="margin: 0;">+<span id="LC97" class="line" lang="plaintext">public, and in some countries other activities as well.</span>
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<pre style="margin: 0;">+<span id="LC98" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC99" class="line" lang="plaintext"> To "convey" a work means any kind of propagation that enables other</span>
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100
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<pre style="margin: 0;">+<span id="LC100" class="line" lang="plaintext">parties to make or receive copies. Mere interaction with a user through</span>
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<td class="diff-line-num new new_line" data-linenumber="101" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
101
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<pre style="margin: 0;">+<span id="LC101" class="line" lang="plaintext">a computer network, with no transfer of a copy, is not conveying.</span>
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102
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<pre style="margin: 0;">+<span id="LC102" class="line" lang="plaintext"></span>
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<td class="diff-line-num new new_line" data-linenumber="103" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
103
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<pre style="margin: 0;">+<span id="LC103" class="line" lang="plaintext"> An interactive user interface displays "Appropriate Legal Notices"</span>
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104
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<pre style="margin: 0;">+<span id="LC104" class="line" lang="plaintext">to the extent that it includes a convenient and prominently visible</span>
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<td class="diff-line-num new new_line" data-linenumber="105" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
105
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<pre style="margin: 0;">+<span id="LC105" class="line" lang="plaintext">feature that (1) displays an appropriate copyright notice, and (2)</span>
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<td class="diff-line-num new new_line" data-linenumber="106" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
106
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<pre style="margin: 0;">+<span id="LC106" class="line" lang="plaintext">tells the user that there is no warranty for the work (except to the</span>
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107
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<pre style="margin: 0;">+<span id="LC107" class="line" lang="plaintext">extent that warranties are provided), that licensees may convey the</span>
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108
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<pre style="margin: 0;">+<span id="LC108" class="line" lang="plaintext">work under this License, and how to view a copy of this License. If</span>
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109
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<pre style="margin: 0;">+<span id="LC109" class="line" lang="plaintext">the interface presents a list of user commands or options, such as a</span>
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110
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<pre style="margin: 0;">+<span id="LC110" class="line" lang="plaintext">menu, a prominent item in the list meets this criterion.</span>
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111
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<pre style="margin: 0;">+<span id="LC111" class="line" lang="plaintext"></span>
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112
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<pre style="margin: 0;">+<span id="LC112" class="line" lang="plaintext"> 1. Source Code.</span>
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113
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<pre style="margin: 0;">+<span id="LC113" class="line" lang="plaintext"></span>
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114
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<pre style="margin: 0;">+<span id="LC114" class="line" lang="plaintext"> The "source code" for a work means the preferred form of the work</span>
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115
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<pre style="margin: 0;">+<span id="LC115" class="line" lang="plaintext">for making modifications to it. "Object code" means any non-source</span>
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116
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<pre style="margin: 0;">+<span id="LC116" class="line" lang="plaintext">form of a work.</span>
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117
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<pre style="margin: 0;">+<span id="LC117" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC118" class="line" lang="plaintext"> A "Standard Interface" means an interface that either is an official</span>
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<pre style="margin: 0;">+<span id="LC119" class="line" lang="plaintext">standard defined by a recognized standards body, or, in the case of</span>
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<pre style="margin: 0;">+<span id="LC120" class="line" lang="plaintext">interfaces specified for a particular programming language, one that</span>
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121
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<pre style="margin: 0;">+<span id="LC121" class="line" lang="plaintext">is widely used among developers working in that language.</span>
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122
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<pre style="margin: 0;">+<span id="LC122" class="line" lang="plaintext"></span>
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123
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<pre style="margin: 0;">+<span id="LC123" class="line" lang="plaintext"> The "System Libraries" of an executable work include anything, other</span>
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124
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<pre style="margin: 0;">+<span id="LC124" class="line" lang="plaintext">than the work as a whole, that (a) is included in the normal form of</span>
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125
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<pre style="margin: 0;">+<span id="LC125" class="line" lang="plaintext">packaging a Major Component, but which is not part of that Major</span>
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<td class="diff-line-num new new_line" data-linenumber="126" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
126
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<pre style="margin: 0;">+<span id="LC126" class="line" lang="plaintext">Component, and (b) serves only to enable use of the work with that</span>
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<td class="diff-line-num new new_line" data-linenumber="127" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
127
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<pre style="margin: 0;">+<span id="LC127" class="line" lang="plaintext">Major Component, or to implement a Standard Interface for which an</span>
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128
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<pre style="margin: 0;">+<span id="LC128" class="line" lang="plaintext">implementation is available to the public in source code form. A</span>
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129
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<pre style="margin: 0;">+<span id="LC129" class="line" lang="plaintext">"Major Component", in this context, means a major essential component</span>
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130
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<pre style="margin: 0;">+<span id="LC130" class="line" lang="plaintext">(kernel, window system, and so on) of the specific operating system</span>
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131
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<pre style="margin: 0;">+<span id="LC131" class="line" lang="plaintext">(if any) on which the executable work runs, or a compiler used to</span>
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132
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<pre style="margin: 0;">+<span id="LC132" class="line" lang="plaintext">produce the work, or an object code interpreter used to run it.</span>
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133
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<pre style="margin: 0;">+<span id="LC133" class="line" lang="plaintext"></span>
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134
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<pre style="margin: 0;">+<span id="LC134" class="line" lang="plaintext"> The "Corresponding Source" for a work in object code form means all</span>
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135
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<pre style="margin: 0;">+<span id="LC135" class="line" lang="plaintext">the source code needed to generate, install, and (for an executable</span>
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136
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<pre style="margin: 0;">+<span id="LC136" class="line" lang="plaintext">work) run the object code and to modify the work, including scripts to</span>
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137
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<pre style="margin: 0;">+<span id="LC137" class="line" lang="plaintext">control those activities. However, it does not include the work's</span>
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138
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<pre style="margin: 0;">+<span id="LC138" class="line" lang="plaintext">System Libraries, or general-purpose tools or generally available free</span>
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139
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<pre style="margin: 0;">+<span id="LC139" class="line" lang="plaintext">programs which are used unmodified in performing those activities but</span>
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140
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<pre style="margin: 0;">+<span id="LC140" class="line" lang="plaintext">which are not part of the work. For example, Corresponding Source</span>
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141
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<pre style="margin: 0;">+<span id="LC141" class="line" lang="plaintext">includes interface definition files associated with source files for</span>
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142
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<pre style="margin: 0;">+<span id="LC142" class="line" lang="plaintext">the work, and the source code for shared libraries and dynamically</span>
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143
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<pre style="margin: 0;">+<span id="LC143" class="line" lang="plaintext">linked subprograms that the work is specifically designed to require,</span>
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144
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<pre style="margin: 0;">+<span id="LC144" class="line" lang="plaintext">such as by intimate data communication or control flow between those</span>
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145
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<pre style="margin: 0;">+<span id="LC145" class="line" lang="plaintext">subprograms and other parts of the work.</span>
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146
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<pre style="margin: 0;">+<span id="LC146" class="line" lang="plaintext"></span>
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<td class="diff-line-num new new_line" data-linenumber="147" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
147
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<pre style="margin: 0;">+<span id="LC147" class="line" lang="plaintext"> The Corresponding Source need not include anything that users</span>
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<td class="diff-line-num new new_line" data-linenumber="148" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
148
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<pre style="margin: 0;">+<span id="LC148" class="line" lang="plaintext">can regenerate automatically from other parts of the Corresponding</span>
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149
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<pre style="margin: 0;">+<span id="LC149" class="line" lang="plaintext">Source.</span>
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150
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<pre style="margin: 0;">+<span id="LC150" class="line" lang="plaintext"></span>
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<td class="diff-line-num new new_line" data-linenumber="151" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
151
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<pre style="margin: 0;">+<span id="LC151" class="line" lang="plaintext"> The Corresponding Source for a work in source code form is that</span>
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152
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<pre style="margin: 0;">+<span id="LC152" class="line" lang="plaintext">same work.</span>
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153
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<pre style="margin: 0;">+<span id="LC153" class="line" lang="plaintext"></span>
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154
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<pre style="margin: 0;">+<span id="LC154" class="line" lang="plaintext"> 2. Basic Permissions.</span>
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155
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<pre style="margin: 0;">+<span id="LC155" class="line" lang="plaintext"></span>
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<td class="diff-line-num new new_line" data-linenumber="156" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
156
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<pre style="margin: 0;">+<span id="LC156" class="line" lang="plaintext"> All rights granted under this License are granted for the term of</span>
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<td class="diff-line-num new new_line" data-linenumber="157" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
157
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<pre style="margin: 0;">+<span id="LC157" class="line" lang="plaintext">copyright on the Program, and are irrevocable provided the stated</span>
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158
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<pre style="margin: 0;">+<span id="LC158" class="line" lang="plaintext">conditions are met. This License explicitly affirms your unlimited</span>
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<td class="diff-line-num new new_line" data-linenumber="159" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
159
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<pre style="margin: 0;">+<span id="LC159" class="line" lang="plaintext">permission to run the unmodified Program. The output from running a</span>
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160
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<pre style="margin: 0;">+<span id="LC160" class="line" lang="plaintext">covered work is covered by this License only if the output, given its</span>
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161
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<pre style="margin: 0;">+<span id="LC161" class="line" lang="plaintext">content, constitutes a covered work. This License acknowledges your</span>
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<td class="diff-line-num new new_line" data-linenumber="162" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
162
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<pre style="margin: 0;">+<span id="LC162" class="line" lang="plaintext">rights of fair use or other equivalent, as provided by copyright law.</span>
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163
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<pre style="margin: 0;">+<span id="LC163" class="line" lang="plaintext"></span>
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164
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<pre style="margin: 0;">+<span id="LC164" class="line" lang="plaintext"> You may make, run and propagate covered works that you do not</span>
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165
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<pre style="margin: 0;">+<span id="LC165" class="line" lang="plaintext">convey, without conditions so long as your license otherwise remains</span>
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166
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<pre style="margin: 0;">+<span id="LC166" class="line" lang="plaintext">in force. You may convey covered works to others for the sole purpose</span>
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167
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<pre style="margin: 0;">+<span id="LC167" class="line" lang="plaintext">of having them make modifications exclusively for you, or provide you</span>
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168
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<pre style="margin: 0;">+<span id="LC168" class="line" lang="plaintext">with facilities for running those works, provided that you comply with</span>
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169
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<pre style="margin: 0;">+<span id="LC169" class="line" lang="plaintext">the terms of this License in conveying all material for which you do</span>
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170
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<pre style="margin: 0;">+<span id="LC170" class="line" lang="plaintext">not control copyright. Those thus making or running the covered works</span>
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<td class="diff-line-num new new_line" data-linenumber="171" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
171
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<pre style="margin: 0;">+<span id="LC171" class="line" lang="plaintext">for you must do so exclusively on your behalf, under your direction</span>
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<td class="diff-line-num new new_line" data-linenumber="172" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
172
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<pre style="margin: 0;">+<span id="LC172" class="line" lang="plaintext">and control, on terms that prohibit them from making any copies of</span>
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<td class="diff-line-num new new_line" data-linenumber="173" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
173
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<pre style="margin: 0;">+<span id="LC173" class="line" lang="plaintext">your copyrighted material outside their relationship with you.</span>
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<td class="diff-line-num new new_line" data-linenumber="174" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
174
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<pre style="margin: 0;">+<span id="LC174" class="line" lang="plaintext"></span>
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<td class="diff-line-num new new_line" data-linenumber="175" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
175
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<pre style="margin: 0;">+<span id="LC175" class="line" lang="plaintext"> Conveying under any other circumstances is permitted solely under</span>
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<td class="diff-line-num new new_line" data-linenumber="176" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
176
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<pre style="margin: 0;">+<span id="LC176" class="line" lang="plaintext">the conditions stated below. Sublicensing is not allowed; section 10</span>
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<pre style="margin: 0;">+<span id="LC177" class="line" lang="plaintext">makes it unnecessary.</span>
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178
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<pre style="margin: 0;">+<span id="LC178" class="line" lang="plaintext"></span>
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179
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<pre style="margin: 0;">+<span id="LC179" class="line" lang="plaintext"> 3. Protecting Users' Legal Rights From Anti-Circumvention Law.</span>
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180
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<pre style="margin: 0;">+<span id="LC180" class="line" lang="plaintext"></span>
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181
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<pre style="margin: 0;">+<span id="LC181" class="line" lang="plaintext"> No covered work shall be deemed part of an effective technological</span>
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182
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<pre style="margin: 0;">+<span id="LC182" class="line" lang="plaintext">measure under any applicable law fulfilling obligations under article</span>
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183
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<pre style="margin: 0;">+<span id="LC183" class="line" lang="plaintext">11 of the WIPO copyright treaty adopted on 20 December 1996, or</span>
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184
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<pre style="margin: 0;">+<span id="LC184" class="line" lang="plaintext">similar laws prohibiting or restricting circumvention of such</span>
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185
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<pre style="margin: 0;">+<span id="LC185" class="line" lang="plaintext">measures.</span>
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186
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<pre style="margin: 0;">+<span id="LC186" class="line" lang="plaintext"></span>
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187
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<pre style="margin: 0;">+<span id="LC187" class="line" lang="plaintext"> When you convey a covered work, you waive any legal power to forbid</span>
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188
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<pre style="margin: 0;">+<span id="LC188" class="line" lang="plaintext">circumvention of technological measures to the extent such circumvention</span>
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189
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<pre style="margin: 0;">+<span id="LC189" class="line" lang="plaintext">is effected by exercising rights under this License with respect to</span>
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190
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<pre style="margin: 0;">+<span id="LC190" class="line" lang="plaintext">the covered work, and you disclaim any intention to limit operation or</span>
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191
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<pre style="margin: 0;">+<span id="LC191" class="line" lang="plaintext">modification of the work as a means of enforcing, against the work's</span>
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<pre style="margin: 0;">+<span id="LC192" class="line" lang="plaintext">users, your or third parties' legal rights to forbid circumvention of</span>
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<pre style="margin: 0;">+<span id="LC193" class="line" lang="plaintext">technological measures.</span>
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194
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<pre style="margin: 0;">+<span id="LC194" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC195" class="line" lang="plaintext"> 4. Conveying Verbatim Copies.</span>
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196
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<pre style="margin: 0;">+<span id="LC196" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC197" class="line" lang="plaintext"> You may convey verbatim copies of the Program's source code as you</span>
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198
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<pre style="margin: 0;">+<span id="LC198" class="line" lang="plaintext">receive it, in any medium, provided that you conspicuously and</span>
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199
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<pre style="margin: 0;">+<span id="LC199" class="line" lang="plaintext">appropriately publish on each copy an appropriate copyright notice;</span>
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200
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<pre style="margin: 0;">+<span id="LC200" class="line" lang="plaintext">keep intact all notices stating that this License and any</span>
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201
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<pre style="margin: 0;">+<span id="LC201" class="line" lang="plaintext">non-permissive terms added in accord with section 7 apply to the code;</span>
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202
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<pre style="margin: 0;">+<span id="LC202" class="line" lang="plaintext">keep intact all notices of the absence of any warranty; and give all</span>
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<pre style="margin: 0;">+<span id="LC203" class="line" lang="plaintext">recipients a copy of this License along with the Program.</span>
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204
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<pre style="margin: 0;">+<span id="LC204" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC205" class="line" lang="plaintext"> You may charge any price or no price for each copy that you convey,</span>
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206
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<pre style="margin: 0;">+<span id="LC206" class="line" lang="plaintext">and you may offer support or warranty protection for a fee.</span>
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<pre style="margin: 0;">+<span id="LC207" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC208" class="line" lang="plaintext"> 5. Conveying Modified Source Versions.</span>
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209
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<pre style="margin: 0;">+<span id="LC209" class="line" lang="plaintext"></span>
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210
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<pre style="margin: 0;">+<span id="LC210" class="line" lang="plaintext"> You may convey a work based on the Program, or the modifications to</span>
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211
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<pre style="margin: 0;">+<span id="LC211" class="line" lang="plaintext">produce it from the Program, in the form of source code under the</span>
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<pre style="margin: 0;">+<span id="LC212" class="line" lang="plaintext">terms of section 4, provided that you also meet all of these conditions:</span>
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213
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<pre style="margin: 0;">+<span id="LC213" class="line" lang="plaintext"></span>
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214
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<pre style="margin: 0;">+<span id="LC214" class="line" lang="plaintext"> a) The work must carry prominent notices stating that you modified</span>
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215
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<pre style="margin: 0;">+<span id="LC215" class="line" lang="plaintext"> it, and giving a relevant date.</span>
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216
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<pre style="margin: 0;">+<span id="LC216" class="line" lang="plaintext"></span>
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217
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<pre style="margin: 0;">+<span id="LC217" class="line" lang="plaintext"> b) The work must carry prominent notices stating that it is</span>
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<pre style="margin: 0;">+<span id="LC218" class="line" lang="plaintext"> released under this License and any conditions added under section</span>
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<pre style="margin: 0;">+<span id="LC219" class="line" lang="plaintext"> 7. This requirement modifies the requirement in section 4 to</span>
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<pre style="margin: 0;">+<span id="LC220" class="line" lang="plaintext"> "keep intact all notices".</span>
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<pre style="margin: 0;">+<span id="LC221" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC222" class="line" lang="plaintext"> c) You must license the entire work, as a whole, under this</span>
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223
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<pre style="margin: 0;">+<span id="LC223" class="line" lang="plaintext"> License to anyone who comes into possession of a copy. This</span>
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<pre style="margin: 0;">+<span id="LC224" class="line" lang="plaintext"> License will therefore apply, along with any applicable section 7</span>
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225
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<pre style="margin: 0;">+<span id="LC225" class="line" lang="plaintext"> additional terms, to the whole of the work, and all its parts,</span>
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<pre style="margin: 0;">+<span id="LC226" class="line" lang="plaintext"> regardless of how they are packaged. This License gives no</span>
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227
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<pre style="margin: 0;">+<span id="LC227" class="line" lang="plaintext"> permission to license the work in any other way, but it does not</span>
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<pre style="margin: 0;">+<span id="LC228" class="line" lang="plaintext"> invalidate such permission if you have separately received it.</span>
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<pre style="margin: 0;">+<span id="LC229" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC230" class="line" lang="plaintext"> d) If the work has interactive user interfaces, each must display</span>
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<pre style="margin: 0;">+<span id="LC231" class="line" lang="plaintext"> Appropriate Legal Notices; however, if the Program has interactive</span>
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<pre style="margin: 0;">+<span id="LC232" class="line" lang="plaintext"> interfaces that do not display Appropriate Legal Notices, your</span>
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<pre style="margin: 0;">+<span id="LC233" class="line" lang="plaintext"> work need not make them do so.</span>
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<pre style="margin: 0;">+<span id="LC234" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC235" class="line" lang="plaintext"> A compilation of a covered work with other separate and independent</span>
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<pre style="margin: 0;">+<span id="LC236" class="line" lang="plaintext">works, which are not by their nature extensions of the covered work,</span>
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<pre style="margin: 0;">+<span id="LC237" class="line" lang="plaintext">and which are not combined with it such as to form a larger program,</span>
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<pre style="margin: 0;">+<span id="LC238" class="line" lang="plaintext">in or on a volume of a storage or distribution medium, is called an</span>
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<pre style="margin: 0;">+<span id="LC239" class="line" lang="plaintext">"aggregate" if the compilation and its resulting copyright are not</span>
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<pre style="margin: 0;">+<span id="LC240" class="line" lang="plaintext">used to limit the access or legal rights of the compilation's users</span>
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<pre style="margin: 0;">+<span id="LC241" class="line" lang="plaintext">beyond what the individual works permit. Inclusion of a covered work</span>
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<pre style="margin: 0;">+<span id="LC242" class="line" lang="plaintext">in an aggregate does not cause this License to apply to the other</span>
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<pre style="margin: 0;">+<span id="LC243" class="line" lang="plaintext">parts of the aggregate.</span>
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<pre style="margin: 0;">+<span id="LC244" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC245" class="line" lang="plaintext"> 6. Conveying Non-Source Forms.</span>
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<pre style="margin: 0;">+<span id="LC246" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC247" class="line" lang="plaintext"> You may convey a covered work in object code form under the terms</span>
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<pre style="margin: 0;">+<span id="LC248" class="line" lang="plaintext">of sections 4 and 5, provided that you also convey the</span>
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<pre style="margin: 0;">+<span id="LC249" class="line" lang="plaintext">machine-readable Corresponding Source under the terms of this License,</span>
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<pre style="margin: 0;">+<span id="LC250" class="line" lang="plaintext">in one of these ways:</span>
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<pre style="margin: 0;">+<span id="LC251" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC252" class="line" lang="plaintext"> a) Convey the object code in, or embodied in, a physical product</span>
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<pre style="margin: 0;">+<span id="LC253" class="line" lang="plaintext"> (including a physical distribution medium), accompanied by the</span>
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<pre style="margin: 0;">+<span id="LC254" class="line" lang="plaintext"> Corresponding Source fixed on a durable physical medium</span>
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255
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<pre style="margin: 0;">+<span id="LC255" class="line" lang="plaintext"> customarily used for software interchange.</span>
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256
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<pre style="margin: 0;">+<span id="LC256" class="line" lang="plaintext"></span>
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<td class="diff-line-num new new_line" data-linenumber="257" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
257
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<pre style="margin: 0;">+<span id="LC257" class="line" lang="plaintext"> b) Convey the object code in, or embodied in, a physical product</span>
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258
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<pre style="margin: 0;">+<span id="LC258" class="line" lang="plaintext"> (including a physical distribution medium), accompanied by a</span>
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259
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<pre style="margin: 0;">+<span id="LC259" class="line" lang="plaintext"> written offer, valid for at least three years and valid for as</span>
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260
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<pre style="margin: 0;">+<span id="LC260" class="line" lang="plaintext"> long as you offer spare parts or customer support for that product</span>
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<td class="diff-line-num new new_line" data-linenumber="261" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
261
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<pre style="margin: 0;">+<span id="LC261" class="line" lang="plaintext"> model, to give anyone who possesses the object code either (1) a</span>
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<td class="diff-line-num new new_line" data-linenumber="262" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
262
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<pre style="margin: 0;">+<span id="LC262" class="line" lang="plaintext"> copy of the Corresponding Source for all the software in the</span>
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263
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<pre style="margin: 0;">+<span id="LC263" class="line" lang="plaintext"> product that is covered by this License, on a durable physical</span>
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264
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<pre style="margin: 0;">+<span id="LC264" class="line" lang="plaintext"> medium customarily used for software interchange, for a price no</span>
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265
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<pre style="margin: 0;">+<span id="LC265" class="line" lang="plaintext"> more than your reasonable cost of physically performing this</span>
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266
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<pre style="margin: 0;">+<span id="LC266" class="line" lang="plaintext"> conveying of source, or (2) access to copy the</span>
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267
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<pre style="margin: 0;">+<span id="LC267" class="line" lang="plaintext"> Corresponding Source from a network server at no charge.</span>
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268
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<pre style="margin: 0;">+<span id="LC268" class="line" lang="plaintext"></span>
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269
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<pre style="margin: 0;">+<span id="LC269" class="line" lang="plaintext"> c) Convey individual copies of the object code with a copy of the</span>
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270
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<pre style="margin: 0;">+<span id="LC270" class="line" lang="plaintext"> written offer to provide the Corresponding Source. This</span>
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271
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<pre style="margin: 0;">+<span id="LC271" class="line" lang="plaintext"> alternative is allowed only occasionally and noncommercially, and</span>
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272
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<pre style="margin: 0;">+<span id="LC272" class="line" lang="plaintext"> only if you received the object code with such an offer, in accord</span>
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273
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<pre style="margin: 0;">+<span id="LC273" class="line" lang="plaintext"> with subsection 6b.</span>
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274
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<pre style="margin: 0;">+<span id="LC274" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC275" class="line" lang="plaintext"> d) Convey the object code by offering access from a designated</span>
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276
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<pre style="margin: 0;">+<span id="LC276" class="line" lang="plaintext"> place (gratis or for a charge), and offer equivalent access to the</span>
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<td class="diff-line-num new new_line" data-linenumber="277" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
277
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<pre style="margin: 0;">+<span id="LC277" class="line" lang="plaintext"> Corresponding Source in the same way through the same place at no</span>
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<td class="diff-line-num new new_line" data-linenumber="278" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC278" class="line" lang="plaintext"> further charge. You need not require recipients to copy the</span>
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<td class="diff-line-num new new_line" data-linenumber="279" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
279
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<pre style="margin: 0;">+<span id="LC279" class="line" lang="plaintext"> Corresponding Source along with the object code. If the place to</span>
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<pre style="margin: 0;">+<span id="LC280" class="line" lang="plaintext"> copy the object code is a network server, the Corresponding Source</span>
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<td class="diff-line-num new new_line" data-linenumber="281" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
281
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<pre style="margin: 0;">+<span id="LC281" class="line" lang="plaintext"> may be on a different server (operated by you or a third party)</span>
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282
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<pre style="margin: 0;">+<span id="LC282" class="line" lang="plaintext"> that supports equivalent copying facilities, provided you maintain</span>
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<td class="diff-line-num new new_line" data-linenumber="283" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
283
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<pre style="margin: 0;">+<span id="LC283" class="line" lang="plaintext"> clear directions next to the object code saying where to find the</span>
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284
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<pre style="margin: 0;">+<span id="LC284" class="line" lang="plaintext"> Corresponding Source. Regardless of what server hosts the</span>
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285
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<pre style="margin: 0;">+<span id="LC285" class="line" lang="plaintext"> Corresponding Source, you remain obligated to ensure that it is</span>
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286
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<pre style="margin: 0;">+<span id="LC286" class="line" lang="plaintext"> available for as long as needed to satisfy these requirements.</span>
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287
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<pre style="margin: 0;">+<span id="LC287" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC288" class="line" lang="plaintext"> e) Convey the object code using peer-to-peer transmission, provided</span>
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289
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<pre style="margin: 0;">+<span id="LC289" class="line" lang="plaintext"> you inform other peers where the object code and Corresponding</span>
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290
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<pre style="margin: 0;">+<span id="LC290" class="line" lang="plaintext"> Source of the work are being offered to the general public at no</span>
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291
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<pre style="margin: 0;">+<span id="LC291" class="line" lang="plaintext"> charge under subsection 6d.</span>
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292
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<pre style="margin: 0;">+<span id="LC292" class="line" lang="plaintext"></span>
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293
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<pre style="margin: 0;">+<span id="LC293" class="line" lang="plaintext"> A separable portion of the object code, whose source code is excluded</span>
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294
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<pre style="margin: 0;">+<span id="LC294" class="line" lang="plaintext">from the Corresponding Source as a System Library, need not be</span>
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295
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<pre style="margin: 0;">+<span id="LC295" class="line" lang="plaintext">included in conveying the object code work.</span>
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296
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<pre style="margin: 0;">+<span id="LC296" class="line" lang="plaintext"></span>
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<td class="diff-line-num new new_line" data-linenumber="297" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
297
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<pre style="margin: 0;">+<span id="LC297" class="line" lang="plaintext"> A "User Product" is either (1) a "consumer product", which means any</span>
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298
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<pre style="margin: 0;">+<span id="LC298" class="line" lang="plaintext">tangible personal property which is normally used for personal, family,</span>
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299
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<pre style="margin: 0;">+<span id="LC299" class="line" lang="plaintext">or household purposes, or (2) anything designed or sold for incorporation</span>
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300
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<pre style="margin: 0;">+<span id="LC300" class="line" lang="plaintext">into a dwelling. In determining whether a product is a consumer product,</span>
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<td class="diff-line-num new new_line" data-linenumber="301" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
301
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<pre style="margin: 0;">+<span id="LC301" class="line" lang="plaintext">doubtful cases shall be resolved in favor of coverage. For a particular</span>
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<td class="diff-line-num new new_line" data-linenumber="302" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
302
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<pre style="margin: 0;">+<span id="LC302" class="line" lang="plaintext">product received by a particular user, "normally used" refers to a</span>
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<td class="diff-line-num new new_line" data-linenumber="303" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
303
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<pre style="margin: 0;">+<span id="LC303" class="line" lang="plaintext">typical or common use of that class of product, regardless of the status</span>
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<td class="diff-line-num new new_line" data-linenumber="304" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
304
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<pre style="margin: 0;">+<span id="LC304" class="line" lang="plaintext">of the particular user or of the way in which the particular user</span>
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<td class="diff-line-num new new_line" data-linenumber="305" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
305
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<pre style="margin: 0;">+<span id="LC305" class="line" lang="plaintext">actually uses, or expects or is expected to use, the product. A product</span>
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<td class="diff-line-num new new_line" data-linenumber="306" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
306
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<pre style="margin: 0;">+<span id="LC306" class="line" lang="plaintext">is a consumer product regardless of whether the product has substantial</span>
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307
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<pre style="margin: 0;">+<span id="LC307" class="line" lang="plaintext">commercial, industrial or non-consumer uses, unless such uses represent</span>
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308
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<pre style="margin: 0;">+<span id="LC308" class="line" lang="plaintext">the only significant mode of use of the product.</span>
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309
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<pre style="margin: 0;">+<span id="LC309" class="line" lang="plaintext"></span>
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<td class="diff-line-num new new_line" data-linenumber="310" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
310
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<pre style="margin: 0;">+<span id="LC310" class="line" lang="plaintext"> "Installation Information" for a User Product means any methods,</span>
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<td class="diff-line-num new new_line" data-linenumber="311" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
311
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<pre style="margin: 0;">+<span id="LC311" class="line" lang="plaintext">procedures, authorization keys, or other information required to install</span>
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312
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<pre style="margin: 0;">+<span id="LC312" class="line" lang="plaintext">and execute modified versions of a covered work in that User Product from</span>
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313
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<pre style="margin: 0;">+<span id="LC313" class="line" lang="plaintext">a modified version of its Corresponding Source. The information must</span>
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314
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<pre style="margin: 0;">+<span id="LC314" class="line" lang="plaintext">suffice to ensure that the continued functioning of the modified object</span>
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315
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<pre style="margin: 0;">+<span id="LC315" class="line" lang="plaintext">code is in no case prevented or interfered with solely because</span>
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316
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<pre style="margin: 0;">+<span id="LC316" class="line" lang="plaintext">modification has been made.</span>
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317
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<pre style="margin: 0;">+<span id="LC317" class="line" lang="plaintext"></span>
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<td class="diff-line-num new new_line" data-linenumber="318" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
318
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<pre style="margin: 0;">+<span id="LC318" class="line" lang="plaintext"> If you convey an object code work under this section in, or with, or</span>
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319
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<pre style="margin: 0;">+<span id="LC319" class="line" lang="plaintext">specifically for use in, a User Product, and the conveying occurs as</span>
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320
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<pre style="margin: 0;">+<span id="LC320" class="line" lang="plaintext">part of a transaction in which the right of possession and use of the</span>
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321
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<pre style="margin: 0;">+<span id="LC321" class="line" lang="plaintext">User Product is transferred to the recipient in perpetuity or for a</span>
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322
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<pre style="margin: 0;">+<span id="LC322" class="line" lang="plaintext">fixed term (regardless of how the transaction is characterized), the</span>
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323
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<pre style="margin: 0;">+<span id="LC323" class="line" lang="plaintext">Corresponding Source conveyed under this section must be accompanied</span>
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324
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<pre style="margin: 0;">+<span id="LC324" class="line" lang="plaintext">by the Installation Information. But this requirement does not apply</span>
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325
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<pre style="margin: 0;">+<span id="LC325" class="line" lang="plaintext">if neither you nor any third party retains the ability to install</span>
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<td class="diff-line-num new new_line" data-linenumber="326" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
326
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<pre style="margin: 0;">+<span id="LC326" class="line" lang="plaintext">modified object code on the User Product (for example, the work has</span>
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327
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<pre style="margin: 0;">+<span id="LC327" class="line" lang="plaintext">been installed in ROM).</span>
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328
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<pre style="margin: 0;">+<span id="LC328" class="line" lang="plaintext"></span>
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<td class="diff-line-num new new_line" data-linenumber="329" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
329
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<pre style="margin: 0;">+<span id="LC329" class="line" lang="plaintext"> The requirement to provide Installation Information does not include a</span>
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330
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<pre style="margin: 0;">+<span id="LC330" class="line" lang="plaintext">requirement to continue to provide support service, warranty, or updates</span>
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<td class="diff-line-num new new_line" data-linenumber="331" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
331
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<pre style="margin: 0;">+<span id="LC331" class="line" lang="plaintext">for a work that has been modified or installed by the recipient, or for</span>
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332
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<pre style="margin: 0;">+<span id="LC332" class="line" lang="plaintext">the User Product in which it has been modified or installed. Access to a</span>
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333
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<pre style="margin: 0;">+<span id="LC333" class="line" lang="plaintext">network may be denied when the modification itself materially and</span>
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334
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<pre style="margin: 0;">+<span id="LC334" class="line" lang="plaintext">adversely affects the operation of the network or violates the rules and</span>
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335
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<pre style="margin: 0;">+<span id="LC335" class="line" lang="plaintext">protocols for communication across the network.</span>
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336
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<pre style="margin: 0;">+<span id="LC336" class="line" lang="plaintext"></span>
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337
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<pre style="margin: 0;">+<span id="LC337" class="line" lang="plaintext"> Corresponding Source conveyed, and Installation Information provided,</span>
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338
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<pre style="margin: 0;">+<span id="LC338" class="line" lang="plaintext">in accord with this section must be in a format that is publicly</span>
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339
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<pre style="margin: 0;">+<span id="LC339" class="line" lang="plaintext">documented (and with an implementation available to the public in</span>
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340
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<pre style="margin: 0;">+<span id="LC340" class="line" lang="plaintext">source code form), and must require no special password or key for</span>
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341
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<pre style="margin: 0;">+<span id="LC341" class="line" lang="plaintext">unpacking, reading or copying.</span>
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342
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<pre style="margin: 0;">+<span id="LC342" class="line" lang="plaintext"></span>
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343
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<pre style="margin: 0;">+<span id="LC343" class="line" lang="plaintext"> 7. Additional Terms.</span>
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344
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<pre style="margin: 0;">+<span id="LC344" class="line" lang="plaintext"></span>
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345
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<pre style="margin: 0;">+<span id="LC345" class="line" lang="plaintext"> "Additional permissions" are terms that supplement the terms of this</span>
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346
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<pre style="margin: 0;">+<span id="LC346" class="line" lang="plaintext">License by making exceptions from one or more of its conditions.</span>
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347
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<pre style="margin: 0;">+<span id="LC347" class="line" lang="plaintext">Additional permissions that are applicable to the entire Program shall</span>
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348
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<pre style="margin: 0;">+<span id="LC348" class="line" lang="plaintext">be treated as though they were included in this License, to the extent</span>
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349
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<pre style="margin: 0;">+<span id="LC349" class="line" lang="plaintext">that they are valid under applicable law. If additional permissions</span>
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350
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<pre style="margin: 0;">+<span id="LC350" class="line" lang="plaintext">apply only to part of the Program, that part may be used separately</span>
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351
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<pre style="margin: 0;">+<span id="LC351" class="line" lang="plaintext">under those permissions, but the entire Program remains governed by</span>
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352
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<pre style="margin: 0;">+<span id="LC352" class="line" lang="plaintext">this License without regard to the additional permissions.</span>
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353
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<pre style="margin: 0;">+<span id="LC353" class="line" lang="plaintext"></span>
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354
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<pre style="margin: 0;">+<span id="LC354" class="line" lang="plaintext"> When you convey a copy of a covered work, you may at your option</span>
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355
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<pre style="margin: 0;">+<span id="LC355" class="line" lang="plaintext">remove any additional permissions from that copy, or from any part of</span>
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356
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<pre style="margin: 0;">+<span id="LC356" class="line" lang="plaintext">it. (Additional permissions may be written to require their own</span>
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357
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<pre style="margin: 0;">+<span id="LC357" class="line" lang="plaintext">removal in certain cases when you modify the work.) You may place</span>
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358
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<pre style="margin: 0;">+<span id="LC358" class="line" lang="plaintext">additional permissions on material, added by you to a covered work,</span>
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359
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<pre style="margin: 0;">+<span id="LC359" class="line" lang="plaintext">for which you have or can give appropriate copyright permission.</span>
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360
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<pre style="margin: 0;">+<span id="LC360" class="line" lang="plaintext"></span>
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361
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<pre style="margin: 0;">+<span id="LC361" class="line" lang="plaintext"> Notwithstanding any other provision of this License, for material you</span>
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362
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<pre style="margin: 0;">+<span id="LC362" class="line" lang="plaintext">add to a covered work, you may (if authorized by the copyright holders of</span>
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363
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<pre style="margin: 0;">+<span id="LC363" class="line" lang="plaintext">that material) supplement the terms of this License with terms:</span>
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364
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<pre style="margin: 0;">+<span id="LC364" class="line" lang="plaintext"></span>
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<td class="diff-line-num new new_line" data-linenumber="365" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
365
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<pre style="margin: 0;">+<span id="LC365" class="line" lang="plaintext"> a) Disclaiming warranty or limiting liability differently from the</span>
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366
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<pre style="margin: 0;">+<span id="LC366" class="line" lang="plaintext"> terms of sections 15 and 16 of this License; or</span>
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367
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<pre style="margin: 0;">+<span id="LC367" class="line" lang="plaintext"></span>
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368
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<pre style="margin: 0;">+<span id="LC368" class="line" lang="plaintext"> b) Requiring preservation of specified reasonable legal notices or</span>
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369
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<pre style="margin: 0;">+<span id="LC369" class="line" lang="plaintext"> author attributions in that material or in the Appropriate Legal</span>
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370
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<pre style="margin: 0;">+<span id="LC370" class="line" lang="plaintext"> Notices displayed by works containing it; or</span>
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371
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<pre style="margin: 0;">+<span id="LC371" class="line" lang="plaintext"></span>
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<td class="diff-line-num new new_line" data-linenumber="372" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
372
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<pre style="margin: 0;">+<span id="LC372" class="line" lang="plaintext"> c) Prohibiting misrepresentation of the origin of that material, or</span>
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373
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<pre style="margin: 0;">+<span id="LC373" class="line" lang="plaintext"> requiring that modified versions of such material be marked in</span>
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374
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<pre style="margin: 0;">+<span id="LC374" class="line" lang="plaintext"> reasonable ways as different from the original version; or</span>
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375
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<pre style="margin: 0;">+<span id="LC375" class="line" lang="plaintext"></span>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="376" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
376
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<pre style="margin: 0;">+<span id="LC376" class="line" lang="plaintext"> d) Limiting the use for publicity purposes of names of licensors or</span>
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<td class="diff-line-num new new_line" data-linenumber="377" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
377
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<pre style="margin: 0;">+<span id="LC377" class="line" lang="plaintext"> authors of the material; or</span>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="378" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
378
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<pre style="margin: 0;">+<span id="LC378" class="line" lang="plaintext"></span>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="379" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
379
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<pre style="margin: 0;">+<span id="LC379" class="line" lang="plaintext"> e) Declining to grant rights under trademark law for use of some</span>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="380" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
380
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<pre style="margin: 0;">+<span id="LC380" class="line" lang="plaintext"> trade names, trademarks, or service marks; or</span>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="381" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
381
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<pre style="margin: 0;">+<span id="LC381" class="line" lang="plaintext"></span>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="382" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
382
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<pre style="margin: 0;">+<span id="LC382" class="line" lang="plaintext"> f) Requiring indemnification of licensors and authors of that</span>
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<td class="diff-line-num new new_line" data-linenumber="383" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
383
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<pre style="margin: 0;">+<span id="LC383" class="line" lang="plaintext"> material by anyone who conveys the material (or modified versions of</span>
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384
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<pre style="margin: 0;">+<span id="LC384" class="line" lang="plaintext"> it) with contractual assumptions of liability to the recipient, for</span>
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385
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<pre style="margin: 0;">+<span id="LC385" class="line" lang="plaintext"> any liability that these contractual assumptions directly impose on</span>
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386
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<pre style="margin: 0;">+<span id="LC386" class="line" lang="plaintext"> those licensors and authors.</span>
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387
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<pre style="margin: 0;">+<span id="LC387" class="line" lang="plaintext"></span>
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388
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<pre style="margin: 0;">+<span id="LC388" class="line" lang="plaintext"> All other non-permissive additional terms are considered "further</span>
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<td class="diff-line-num new new_line" data-linenumber="389" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
389
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<pre style="margin: 0;">+<span id="LC389" class="line" lang="plaintext">restrictions" within the meaning of section 10. If the Program as you</span>
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<td class="diff-line-num new new_line" data-linenumber="390" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
390
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<pre style="margin: 0;">+<span id="LC390" class="line" lang="plaintext">received it, or any part of it, contains a notice stating that it is</span>
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<td class="diff-line-num new new_line" data-linenumber="391" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
391
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<pre style="margin: 0;">+<span id="LC391" class="line" lang="plaintext">governed by this License along with a term that is a further</span>
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<td class="diff-line-num new new_line" data-linenumber="392" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
392
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<pre style="margin: 0;">+<span id="LC392" class="line" lang="plaintext">restriction, you may remove that term. If a license document contains</span>
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393
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<pre style="margin: 0;">+<span id="LC393" class="line" lang="plaintext">a further restriction but permits relicensing or conveying under this</span>
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394
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<pre style="margin: 0;">+<span id="LC394" class="line" lang="plaintext">License, you may add to a covered work material governed by the terms</span>
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395
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<pre style="margin: 0;">+<span id="LC395" class="line" lang="plaintext">of that license document, provided that the further restriction does</span>
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396
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<pre style="margin: 0;">+<span id="LC396" class="line" lang="plaintext">not survive such relicensing or conveying.</span>
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397
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<pre style="margin: 0;">+<span id="LC397" class="line" lang="plaintext"></span>
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398
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<pre style="margin: 0;">+<span id="LC398" class="line" lang="plaintext"> If you add terms to a covered work in accord with this section, you</span>
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399
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<pre style="margin: 0;">+<span id="LC399" class="line" lang="plaintext">must place, in the relevant source files, a statement of the</span>
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400
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<pre style="margin: 0;">+<span id="LC400" class="line" lang="plaintext">additional terms that apply to those files, or a notice indicating</span>
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401
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<pre style="margin: 0;">+<span id="LC401" class="line" lang="plaintext">where to find the applicable terms.</span>
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402
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<pre style="margin: 0;">+<span id="LC402" class="line" lang="plaintext"></span>
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<td class="diff-line-num new new_line" data-linenumber="403" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
403
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<pre style="margin: 0;">+<span id="LC403" class="line" lang="plaintext"> Additional terms, permissive or non-permissive, may be stated in the</span>
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404
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<pre style="margin: 0;">+<span id="LC404" class="line" lang="plaintext">form of a separately written license, or stated as exceptions;</span>
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405
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<pre style="margin: 0;">+<span id="LC405" class="line" lang="plaintext">the above requirements apply either way.</span>
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406
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<pre style="margin: 0;">+<span id="LC406" class="line" lang="plaintext"></span>
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407
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<pre style="margin: 0;">+<span id="LC407" class="line" lang="plaintext"> 8. Termination.</span>
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408
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<pre style="margin: 0;">+<span id="LC408" class="line" lang="plaintext"></span>
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<td class="diff-line-num new new_line" data-linenumber="409" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
409
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<pre style="margin: 0;">+<span id="LC409" class="line" lang="plaintext"> You may not propagate or modify a covered work except as expressly</span>
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410
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<pre style="margin: 0;">+<span id="LC410" class="line" lang="plaintext">provided under this License. Any attempt otherwise to propagate or</span>
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411
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<pre style="margin: 0;">+<span id="LC411" class="line" lang="plaintext">modify it is void, and will automatically terminate your rights under</span>
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412
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<pre style="margin: 0;">+<span id="LC412" class="line" lang="plaintext">this License (including any patent licenses granted under the third</span>
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413
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<pre style="margin: 0;">+<span id="LC413" class="line" lang="plaintext">paragraph of section 11).</span>
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414
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<pre style="margin: 0;">+<span id="LC414" class="line" lang="plaintext"></span>
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<td class="diff-line-num new new_line" data-linenumber="415" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
415
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<pre style="margin: 0;">+<span id="LC415" class="line" lang="plaintext"> However, if you cease all violation of this License, then your</span>
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<td class="diff-line-num new new_line" data-linenumber="416" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
416
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<pre style="margin: 0;">+<span id="LC416" class="line" lang="plaintext">license from a particular copyright holder is reinstated (a)</span>
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<td class="diff-line-num new new_line" data-linenumber="417" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
417
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<pre style="margin: 0;">+<span id="LC417" class="line" lang="plaintext">provisionally, unless and until the copyright holder explicitly and</span>
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<td class="diff-line-num new new_line" data-linenumber="418" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
418
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<pre style="margin: 0;">+<span id="LC418" class="line" lang="plaintext">finally terminates your license, and (b) permanently, if the copyright</span>
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419
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<pre style="margin: 0;">+<span id="LC419" class="line" lang="plaintext">holder fails to notify you of the violation by some reasonable means</span>
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420
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<pre style="margin: 0;">+<span id="LC420" class="line" lang="plaintext">prior to 60 days after the cessation.</span>
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421
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<pre style="margin: 0;">+<span id="LC421" class="line" lang="plaintext"></span>
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422
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<pre style="margin: 0;">+<span id="LC422" class="line" lang="plaintext"> Moreover, your license from a particular copyright holder is</span>
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423
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<pre style="margin: 0;">+<span id="LC423" class="line" lang="plaintext">reinstated permanently if the copyright holder notifies you of the</span>
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424
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<pre style="margin: 0;">+<span id="LC424" class="line" lang="plaintext">violation by some reasonable means, this is the first time you have</span>
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425
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<pre style="margin: 0;">+<span id="LC425" class="line" lang="plaintext">received notice of violation of this License (for any work) from that</span>
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426
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<pre style="margin: 0;">+<span id="LC426" class="line" lang="plaintext">copyright holder, and you cure the violation prior to 30 days after</span>
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427
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<pre style="margin: 0;">+<span id="LC427" class="line" lang="plaintext">your receipt of the notice.</span>
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428
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<pre style="margin: 0;">+<span id="LC428" class="line" lang="plaintext"></span>
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<td class="diff-line-num new new_line" data-linenumber="429" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
429
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<pre style="margin: 0;">+<span id="LC429" class="line" lang="plaintext"> Termination of your rights under this section does not terminate the</span>
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<td class="diff-line-num new new_line" data-linenumber="430" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
430
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<pre style="margin: 0;">+<span id="LC430" class="line" lang="plaintext">licenses of parties who have received copies or rights from you under</span>
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431
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<pre style="margin: 0;">+<span id="LC431" class="line" lang="plaintext">this License. If your rights have been terminated and not permanently</span>
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<td class="diff-line-num new new_line" data-linenumber="432" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
432
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<pre style="margin: 0;">+<span id="LC432" class="line" lang="plaintext">reinstated, you do not qualify to receive new licenses for the same</span>
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<td class="diff-line-num new new_line" data-linenumber="433" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
433
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<pre style="margin: 0;">+<span id="LC433" class="line" lang="plaintext">material under section 10.</span>
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434
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<pre style="margin: 0;">+<span id="LC434" class="line" lang="plaintext"></span>
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<td class="diff-line-num new new_line" data-linenumber="435" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
435
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<pre style="margin: 0;">+<span id="LC435" class="line" lang="plaintext"> 9. Acceptance Not Required for Having Copies.</span>
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436
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<pre style="margin: 0;">+<span id="LC436" class="line" lang="plaintext"></span>
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437
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<pre style="margin: 0;">+<span id="LC437" class="line" lang="plaintext"> You are not required to accept this License in order to receive or</span>
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438
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<pre style="margin: 0;">+<span id="LC438" class="line" lang="plaintext">run a copy of the Program. Ancillary propagation of a covered work</span>
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439
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<pre style="margin: 0;">+<span id="LC439" class="line" lang="plaintext">occurring solely as a consequence of using peer-to-peer transmission</span>
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440
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<pre style="margin: 0;">+<span id="LC440" class="line" lang="plaintext">to receive a copy likewise does not require acceptance. However,</span>
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441
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<pre style="margin: 0;">+<span id="LC441" class="line" lang="plaintext">nothing other than this License grants you permission to propagate or</span>
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442
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<pre style="margin: 0;">+<span id="LC442" class="line" lang="plaintext">modify any covered work. These actions infringe copyright if you do</span>
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443
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<pre style="margin: 0;">+<span id="LC443" class="line" lang="plaintext">not accept this License. Therefore, by modifying or propagating a</span>
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444
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<pre style="margin: 0;">+<span id="LC444" class="line" lang="plaintext">covered work, you indicate your acceptance of this License to do so.</span>
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445
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<pre style="margin: 0;">+<span id="LC445" class="line" lang="plaintext"></span>
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446
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<pre style="margin: 0;">+<span id="LC446" class="line" lang="plaintext"> 10. Automatic Licensing of Downstream Recipients.</span>
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447
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<pre style="margin: 0;">+<span id="LC447" class="line" lang="plaintext"></span>
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448
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<pre style="margin: 0;">+<span id="LC448" class="line" lang="plaintext"> Each time you convey a covered work, the recipient automatically</span>
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449
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<pre style="margin: 0;">+<span id="LC449" class="line" lang="plaintext">receives a license from the original licensors, to run, modify and</span>
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450
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<pre style="margin: 0;">+<span id="LC450" class="line" lang="plaintext">propagate that work, subject to this License. You are not responsible</span>
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451
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<pre style="margin: 0;">+<span id="LC451" class="line" lang="plaintext">for enforcing compliance by third parties with this License.</span>
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452
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<pre style="margin: 0;">+<span id="LC452" class="line" lang="plaintext"></span>
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453
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<pre style="margin: 0;">+<span id="LC453" class="line" lang="plaintext"> An "entity transaction" is a transaction transferring control of an</span>
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454
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<pre style="margin: 0;">+<span id="LC454" class="line" lang="plaintext">organization, or substantially all assets of one, or subdividing an</span>
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455
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<pre style="margin: 0;">+<span id="LC455" class="line" lang="plaintext">organization, or merging organizations. If propagation of a covered</span>
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456
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<pre style="margin: 0;">+<span id="LC456" class="line" lang="plaintext">work results from an entity transaction, each party to that</span>
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457
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<pre style="margin: 0;">+<span id="LC457" class="line" lang="plaintext">transaction who receives a copy of the work also receives whatever</span>
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458
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<pre style="margin: 0;">+<span id="LC458" class="line" lang="plaintext">licenses to the work the party's predecessor in interest had or could</span>
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459
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<pre style="margin: 0;">+<span id="LC459" class="line" lang="plaintext">give under the previous paragraph, plus a right to possession of the</span>
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460
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<pre style="margin: 0;">+<span id="LC460" class="line" lang="plaintext">Corresponding Source of the work from the predecessor in interest, if</span>
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<pre style="margin: 0;">+<span id="LC461" class="line" lang="plaintext">the predecessor has it or can get it with reasonable efforts.</span>
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462
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<pre style="margin: 0;">+<span id="LC462" class="line" lang="plaintext"></span>
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463
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<pre style="margin: 0;">+<span id="LC463" class="line" lang="plaintext"> You may not impose any further restrictions on the exercise of the</span>
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464
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<pre style="margin: 0;">+<span id="LC464" class="line" lang="plaintext">rights granted or affirmed under this License. For example, you may</span>
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465
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<pre style="margin: 0;">+<span id="LC465" class="line" lang="plaintext">not impose a license fee, royalty, or other charge for exercise of</span>
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466
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<pre style="margin: 0;">+<span id="LC466" class="line" lang="plaintext">rights granted under this License, and you may not initiate litigation</span>
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467
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<pre style="margin: 0;">+<span id="LC467" class="line" lang="plaintext">(including a cross-claim or counterclaim in a lawsuit) alleging that</span>
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468
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<pre style="margin: 0;">+<span id="LC468" class="line" lang="plaintext">any patent claim is infringed by making, using, selling, offering for</span>
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469
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<pre style="margin: 0;">+<span id="LC469" class="line" lang="plaintext">sale, or importing the Program or any portion of it.</span>
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470
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<pre style="margin: 0;">+<span id="LC470" class="line" lang="plaintext"></span>
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471
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<pre style="margin: 0;">+<span id="LC471" class="line" lang="plaintext"> 11. Patents.</span>
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472
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<pre style="margin: 0;">+<span id="LC472" class="line" lang="plaintext"></span>
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473
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<pre style="margin: 0;">+<span id="LC473" class="line" lang="plaintext"> A "contributor" is a copyright holder who authorizes use under this</span>
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474
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<pre style="margin: 0;">+<span id="LC474" class="line" lang="plaintext">License of the Program or a work on which the Program is based. The</span>
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475
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<pre style="margin: 0;">+<span id="LC475" class="line" lang="plaintext">work thus licensed is called the contributor's "contributor version".</span>
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476
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<pre style="margin: 0;">+<span id="LC476" class="line" lang="plaintext"></span>
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477
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<pre style="margin: 0;">+<span id="LC477" class="line" lang="plaintext"> A contributor's "essential patent claims" are all patent claims</span>
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478
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<pre style="margin: 0;">+<span id="LC478" class="line" lang="plaintext">owned or controlled by the contributor, whether already acquired or</span>
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479
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<pre style="margin: 0;">+<span id="LC479" class="line" lang="plaintext">hereafter acquired, that would be infringed by some manner, permitted</span>
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480
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<pre style="margin: 0;">+<span id="LC480" class="line" lang="plaintext">by this License, of making, using, or selling its contributor version,</span>
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481
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<pre style="margin: 0;">+<span id="LC481" class="line" lang="plaintext">but do not include claims that would be infringed only as a</span>
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482
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<pre style="margin: 0;">+<span id="LC482" class="line" lang="plaintext">consequence of further modification of the contributor version. For</span>
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483
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<pre style="margin: 0;">+<span id="LC483" class="line" lang="plaintext">purposes of this definition, "control" includes the right to grant</span>
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484
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<pre style="margin: 0;">+<span id="LC484" class="line" lang="plaintext">patent sublicenses in a manner consistent with the requirements of</span>
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485
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<pre style="margin: 0;">+<span id="LC485" class="line" lang="plaintext">this License.</span>
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486
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<pre style="margin: 0;">+<span id="LC486" class="line" lang="plaintext"></span>
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487
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<pre style="margin: 0;">+<span id="LC487" class="line" lang="plaintext"> Each contributor grants you a non-exclusive, worldwide, royalty-free</span>
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<td class="diff-line-num new new_line" data-linenumber="488" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
488
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<pre style="margin: 0;">+<span id="LC488" class="line" lang="plaintext">patent license under the contributor's essential patent claims, to</span>
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<td class="diff-line-num new new_line" data-linenumber="489" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
489
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<pre style="margin: 0;">+<span id="LC489" class="line" lang="plaintext">make, use, sell, offer for sale, import and otherwise run, modify and</span>
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<td class="diff-line-num new new_line" data-linenumber="490" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
490
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<pre style="margin: 0;">+<span id="LC490" class="line" lang="plaintext">propagate the contents of its contributor version.</span>
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491
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<pre style="margin: 0;">+<span id="LC491" class="line" lang="plaintext"></span>
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<td class="diff-line-num new new_line" data-linenumber="492" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
492
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<pre style="margin: 0;">+<span id="LC492" class="line" lang="plaintext"> In the following three paragraphs, a "patent license" is any express</span>
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<td class="diff-line-num new new_line" data-linenumber="493" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
493
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<pre style="margin: 0;">+<span id="LC493" class="line" lang="plaintext">agreement or commitment, however denominated, not to enforce a patent</span>
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<td class="diff-line-num new new_line" data-linenumber="494" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
494
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<pre style="margin: 0;">+<span id="LC494" class="line" lang="plaintext">(such as an express permission to practice a patent or covenant not to</span>
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<td class="diff-line-num new new_line" data-linenumber="495" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
495
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<pre style="margin: 0;">+<span id="LC495" class="line" lang="plaintext">sue for patent infringement). To "grant" such a patent license to a</span>
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<td class="diff-line-num new new_line" data-linenumber="496" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
496
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<pre style="margin: 0;">+<span id="LC496" class="line" lang="plaintext">party means to make such an agreement or commitment not to enforce a</span>
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497
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<pre style="margin: 0;">+<span id="LC497" class="line" lang="plaintext">patent against the party.</span>
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498
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<pre style="margin: 0;">+<span id="LC498" class="line" lang="plaintext"></span>
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<td class="diff-line-num new new_line" data-linenumber="499" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
499
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<pre style="margin: 0;">+<span id="LC499" class="line" lang="plaintext"> If you convey a covered work, knowingly relying on a patent license,</span>
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500
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<pre style="margin: 0;">+<span id="LC500" class="line" lang="plaintext">and the Corresponding Source of the work is not available for anyone</span>
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<td class="diff-line-num new new_line" data-linenumber="501" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
501
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<pre style="margin: 0;">+<span id="LC501" class="line" lang="plaintext">to copy, free of charge and under the terms of this License, through a</span>
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<td class="diff-line-num new new_line" data-linenumber="502" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
502
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<pre style="margin: 0;">+<span id="LC502" class="line" lang="plaintext">publicly available network server or other readily accessible means,</span>
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<td class="diff-line-num new new_line" data-linenumber="503" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
503
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<pre style="margin: 0;">+<span id="LC503" class="line" lang="plaintext">then you must either (1) cause the Corresponding Source to be so</span>
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<td class="diff-line-num new new_line" data-linenumber="504" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
504
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<pre style="margin: 0;">+<span id="LC504" class="line" lang="plaintext">available, or (2) arrange to deprive yourself of the benefit of the</span>
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<td class="diff-line-num new new_line" data-linenumber="505" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
505
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<pre style="margin: 0;">+<span id="LC505" class="line" lang="plaintext">patent license for this particular work, or (3) arrange, in a manner</span>
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<td class="diff-line-num new new_line" data-linenumber="506" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
506
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<pre style="margin: 0;">+<span id="LC506" class="line" lang="plaintext">consistent with the requirements of this License, to extend the patent</span>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="507" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
507
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<pre style="margin: 0;">+<span id="LC507" class="line" lang="plaintext">license to downstream recipients. "Knowingly relying" means you have</span>
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<td class="diff-line-num new new_line" data-linenumber="508" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
508
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<pre style="margin: 0;">+<span id="LC508" class="line" lang="plaintext">actual knowledge that, but for the patent license, your conveying the</span>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="509" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
509
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<pre style="margin: 0;">+<span id="LC509" class="line" lang="plaintext">covered work in a country, or your recipient's use of the covered work</span>
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<td class="diff-line-num new new_line" data-linenumber="510" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
510
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<pre style="margin: 0;">+<span id="LC510" class="line" lang="plaintext">in a country, would infringe one or more identifiable patents in that</span>
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<td class="diff-line-num new new_line" data-linenumber="511" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
511
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<pre style="margin: 0;">+<span id="LC511" class="line" lang="plaintext">country that you have reason to believe are valid.</span>
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<td class="diff-line-num new new_line" data-linenumber="512" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
512
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<pre style="margin: 0;">+<span id="LC512" class="line" lang="plaintext"></span>
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<td class="diff-line-num new new_line" data-linenumber="513" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
513
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<pre style="margin: 0;">+<span id="LC513" class="line" lang="plaintext"> If, pursuant to or in connection with a single transaction or</span>
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<td class="diff-line-num new new_line" data-linenumber="514" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
514
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<pre style="margin: 0;">+<span id="LC514" class="line" lang="plaintext">arrangement, you convey, or propagate by procuring conveyance of, a</span>
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<td class="diff-line-num new new_line" data-linenumber="515" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
515
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<pre style="margin: 0;">+<span id="LC515" class="line" lang="plaintext">covered work, and grant a patent license to some of the parties</span>
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516
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<pre style="margin: 0;">+<span id="LC516" class="line" lang="plaintext">receiving the covered work authorizing them to use, propagate, modify</span>
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<td class="diff-line-num new new_line" data-linenumber="517" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
517
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<pre style="margin: 0;">+<span id="LC517" class="line" lang="plaintext">or convey a specific copy of the covered work, then the patent license</span>
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518
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<pre style="margin: 0;">+<span id="LC518" class="line" lang="plaintext">you grant is automatically extended to all recipients of the covered</span>
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519
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<pre style="margin: 0;">+<span id="LC519" class="line" lang="plaintext">work and works based on it.</span>
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520
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<pre style="margin: 0;">+<span id="LC520" class="line" lang="plaintext"></span>
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521
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<pre style="margin: 0;">+<span id="LC521" class="line" lang="plaintext"> A patent license is "discriminatory" if it does not include within</span>
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522
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<pre style="margin: 0;">+<span id="LC522" class="line" lang="plaintext">the scope of its coverage, prohibits the exercise of, or is</span>
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523
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<pre style="margin: 0;">+<span id="LC523" class="line" lang="plaintext">conditioned on the non-exercise of one or more of the rights that are</span>
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524
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<pre style="margin: 0;">+<span id="LC524" class="line" lang="plaintext">specifically granted under this License. You may not convey a covered</span>
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525
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<pre style="margin: 0;">+<span id="LC525" class="line" lang="plaintext">work if you are a party to an arrangement with a third party that is</span>
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526
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<pre style="margin: 0;">+<span id="LC526" class="line" lang="plaintext">in the business of distributing software, under which you make payment</span>
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527
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<pre style="margin: 0;">+<span id="LC527" class="line" lang="plaintext">to the third party based on the extent of your activity of conveying</span>
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528
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<pre style="margin: 0;">+<span id="LC528" class="line" lang="plaintext">the work, and under which the third party grants, to any of the</span>
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529
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<pre style="margin: 0;">+<span id="LC529" class="line" lang="plaintext">parties who would receive the covered work from you, a discriminatory</span>
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530
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<pre style="margin: 0;">+<span id="LC530" class="line" lang="plaintext">patent license (a) in connection with copies of the covered work</span>
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<td class="diff-line-num new new_line" data-linenumber="531" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
531
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<pre style="margin: 0;">+<span id="LC531" class="line" lang="plaintext">conveyed by you (or copies made from those copies), or (b) primarily</span>
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532
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<pre style="margin: 0;">+<span id="LC532" class="line" lang="plaintext">for and in connection with specific products or compilations that</span>
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533
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<pre style="margin: 0;">+<span id="LC533" class="line" lang="plaintext">contain the covered work, unless you entered into that arrangement,</span>
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534
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<pre style="margin: 0;">+<span id="LC534" class="line" lang="plaintext">or that patent license was granted, prior to 28 March 2007.</span>
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535
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<pre style="margin: 0;">+<span id="LC535" class="line" lang="plaintext"></span>
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<td class="diff-line-num new new_line" data-linenumber="536" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
536
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<pre style="margin: 0;">+<span id="LC536" class="line" lang="plaintext"> Nothing in this License shall be construed as excluding or limiting</span>
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<td class="diff-line-num new new_line" data-linenumber="537" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
537
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<pre style="margin: 0;">+<span id="LC537" class="line" lang="plaintext">any implied license or other defenses to infringement that may</span>
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538
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<pre style="margin: 0;">+<span id="LC538" class="line" lang="plaintext">otherwise be available to you under applicable patent law.</span>
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539
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<pre style="margin: 0;">+<span id="LC539" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC540" class="line" lang="plaintext"> 12. No Surrender of Others' Freedom.</span>
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541
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<pre style="margin: 0;">+<span id="LC541" class="line" lang="plaintext"></span>
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542
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<pre style="margin: 0;">+<span id="LC542" class="line" lang="plaintext"> If conditions are imposed on you (whether by court order, agreement or</span>
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543
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<pre style="margin: 0;">+<span id="LC543" class="line" lang="plaintext">otherwise) that contradict the conditions of this License, they do not</span>
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544
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<pre style="margin: 0;">+<span id="LC544" class="line" lang="plaintext">excuse you from the conditions of this License. If you cannot convey a</span>
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545
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<pre style="margin: 0;">+<span id="LC545" class="line" lang="plaintext">covered work so as to satisfy simultaneously your obligations under this</span>
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546
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<pre style="margin: 0;">+<span id="LC546" class="line" lang="plaintext">License and any other pertinent obligations, then as a consequence you may</span>
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547
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<pre style="margin: 0;">+<span id="LC547" class="line" lang="plaintext">not convey it at all. For example, if you agree to terms that obligate you</span>
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548
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<pre style="margin: 0;">+<span id="LC548" class="line" lang="plaintext">to collect a royalty for further conveying from those to whom you convey</span>
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549
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<pre style="margin: 0;">+<span id="LC549" class="line" lang="plaintext">the Program, the only way you could satisfy both those terms and this</span>
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550
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<pre style="margin: 0;">+<span id="LC550" class="line" lang="plaintext">License would be to refrain entirely from conveying the Program.</span>
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551
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<pre style="margin: 0;">+<span id="LC551" class="line" lang="plaintext"></span>
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552
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<pre style="margin: 0;">+<span id="LC552" class="line" lang="plaintext"> 13. Use with the GNU Affero General Public License.</span>
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553
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554
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<pre style="margin: 0;">+<span id="LC554" class="line" lang="plaintext"> Notwithstanding any other provision of this License, you have</span>
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555
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<pre style="margin: 0;">+<span id="LC555" class="line" lang="plaintext">permission to link or combine any covered work with a work licensed</span>
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556
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<pre style="margin: 0;">+<span id="LC556" class="line" lang="plaintext">under version 3 of the GNU Affero General Public License into a single</span>
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557
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<pre style="margin: 0;">+<span id="LC557" class="line" lang="plaintext">combined work, and to convey the resulting work. The terms of this</span>
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558
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<pre style="margin: 0;">+<span id="LC558" class="line" lang="plaintext">License will continue to apply to the part which is the covered work,</span>
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559
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<pre style="margin: 0;">+<span id="LC559" class="line" lang="plaintext">but the special requirements of the GNU Affero General Public License,</span>
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560
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<pre style="margin: 0;">+<span id="LC560" class="line" lang="plaintext">section 13, concerning interaction through a network will apply to the</span>
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561
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<pre style="margin: 0;">+<span id="LC561" class="line" lang="plaintext">combination as such.</span>
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562
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<pre style="margin: 0;">+<span id="LC562" class="line" lang="plaintext"></span>
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563
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<pre style="margin: 0;">+<span id="LC563" class="line" lang="plaintext"> 14. Revised Versions of this License.</span>
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<pre style="margin: 0;">+<span id="LC564" class="line" lang="plaintext"></span>
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<td class="diff-line-num new new_line" data-linenumber="565" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
565
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<pre style="margin: 0;">+<span id="LC565" class="line" lang="plaintext"> The Free Software Foundation may publish revised and/or new versions of</span>
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566
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<pre style="margin: 0;">+<span id="LC566" class="line" lang="plaintext">the GNU General Public License from time to time. Such new versions will</span>
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567
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<pre style="margin: 0;">+<span id="LC567" class="line" lang="plaintext">be similar in spirit to the present version, but may differ in detail to</span>
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568
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<pre style="margin: 0;">+<span id="LC568" class="line" lang="plaintext">address new problems or concerns.</span>
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569
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<pre style="margin: 0;">+<span id="LC569" class="line" lang="plaintext"></span>
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570
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<pre style="margin: 0;">+<span id="LC570" class="line" lang="plaintext"> Each version is given a distinguishing version number. If the</span>
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571
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<pre style="margin: 0;">+<span id="LC571" class="line" lang="plaintext">Program specifies that a certain numbered version of the GNU General</span>
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<td class="diff-line-num new new_line" data-linenumber="572" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
572
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<pre style="margin: 0;">+<span id="LC572" class="line" lang="plaintext">Public License "or any later version" applies to it, you have the</span>
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573
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<pre style="margin: 0;">+<span id="LC573" class="line" lang="plaintext">option of following the terms and conditions either of that numbered</span>
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574
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<pre style="margin: 0;">+<span id="LC574" class="line" lang="plaintext">version or of any later version published by the Free Software</span>
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575
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<pre style="margin: 0;">+<span id="LC575" class="line" lang="plaintext">Foundation. If the Program does not specify a version number of the</span>
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576
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<pre style="margin: 0;">+<span id="LC576" class="line" lang="plaintext">GNU General Public License, you may choose any version ever published</span>
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577
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<pre style="margin: 0;">+<span id="LC577" class="line" lang="plaintext">by the Free Software Foundation.</span>
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578
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<pre style="margin: 0;">+<span id="LC578" class="line" lang="plaintext"></span>
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579
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<pre style="margin: 0;">+<span id="LC579" class="line" lang="plaintext"> If the Program specifies that a proxy can decide which future</span>
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580
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<pre style="margin: 0;">+<span id="LC580" class="line" lang="plaintext">versions of the GNU General Public License can be used, that proxy's</span>
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581
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<pre style="margin: 0;">+<span id="LC581" class="line" lang="plaintext">public statement of acceptance of a version permanently authorizes you</span>
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582
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<pre style="margin: 0;">+<span id="LC582" class="line" lang="plaintext">to choose that version for the Program.</span>
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583
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<pre style="margin: 0;">+<span id="LC583" class="line" lang="plaintext"></span>
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584
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<pre style="margin: 0;">+<span id="LC584" class="line" lang="plaintext"> Later license versions may give you additional or different</span>
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585
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<pre style="margin: 0;">+<span id="LC585" class="line" lang="plaintext">permissions. However, no additional obligations are imposed on any</span>
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586
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<pre style="margin: 0;">+<span id="LC586" class="line" lang="plaintext">author or copyright holder as a result of your choosing to follow a</span>
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587
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<pre style="margin: 0;">+<span id="LC587" class="line" lang="plaintext">later version.</span>
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588
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<pre style="margin: 0;">+<span id="LC588" class="line" lang="plaintext"></span>
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589
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<pre style="margin: 0;">+<span id="LC589" class="line" lang="plaintext"> 15. Disclaimer of Warranty.</span>
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590
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<pre style="margin: 0;">+<span id="LC590" class="line" lang="plaintext"></span>
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591
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<pre style="margin: 0;">+<span id="LC591" class="line" lang="plaintext"> THERE IS NO WARRANTY FOR THE PROGRAM, TO THE EXTENT PERMITTED BY</span>
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592
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<pre style="margin: 0;">+<span id="LC592" class="line" lang="plaintext">APPLICABLE LAW. EXCEPT WHEN OTHERWISE STATED IN WRITING THE COPYRIGHT</span>
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593
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<pre style="margin: 0;">+<span id="LC593" class="line" lang="plaintext">HOLDERS AND/OR OTHER PARTIES PROVIDE THE PROGRAM "AS IS" WITHOUT WARRANTY</span>
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594
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<pre style="margin: 0;">+<span id="LC594" class="line" lang="plaintext">OF ANY KIND, EITHER EXPRESSED OR IMPLIED, INCLUDING, BUT NOT LIMITED TO,</span>
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595
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<pre style="margin: 0;">+<span id="LC595" class="line" lang="plaintext">THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR</span>
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596
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<pre style="margin: 0;">+<span id="LC596" class="line" lang="plaintext">PURPOSE. THE ENTIRE RISK AS TO THE QUALITY AND PERFORMANCE OF THE PROGRAM</span>
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<td class="diff-line-num new new_line" data-linenumber="597" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
597
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<pre style="margin: 0;">+<span id="LC597" class="line" lang="plaintext">IS WITH YOU. SHOULD THE PROGRAM PROVE DEFECTIVE, YOU ASSUME THE COST OF</span>
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<td class="diff-line-num new new_line" data-linenumber="598" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
598
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<pre style="margin: 0;">+<span id="LC598" class="line" lang="plaintext">ALL NECESSARY SERVICING, REPAIR OR CORRECTION.</span>
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599
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<pre style="margin: 0;">+<span id="LC599" class="line" lang="plaintext"></span>
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600
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<pre style="margin: 0;">+<span id="LC600" class="line" lang="plaintext"> 16. Limitation of Liability.</span>
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601
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<pre style="margin: 0;">+<span id="LC601" class="line" lang="plaintext"></span>
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602
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<pre style="margin: 0;">+<span id="LC602" class="line" lang="plaintext"> IN NO EVENT UNLESS REQUIRED BY APPLICABLE LAW OR AGREED TO IN WRITING</span>
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603
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<pre style="margin: 0;">+<span id="LC603" class="line" lang="plaintext">WILL ANY COPYRIGHT HOLDER, OR ANY OTHER PARTY WHO MODIFIES AND/OR CONVEYS</span>
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604
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<pre style="margin: 0;">+<span id="LC604" class="line" lang="plaintext">THE PROGRAM AS PERMITTED ABOVE, BE LIABLE TO YOU FOR DAMAGES, INCLUDING ANY</span>
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605
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<pre style="margin: 0;">+<span id="LC605" class="line" lang="plaintext">GENERAL, SPECIAL, INCIDENTAL OR CONSEQUENTIAL DAMAGES ARISING OUT OF THE</span>
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<td class="diff-line-num new new_line" data-linenumber="606" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
606
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<pre style="margin: 0;">+<span id="LC606" class="line" lang="plaintext">USE OR INABILITY TO USE THE PROGRAM (INCLUDING BUT NOT LIMITED TO LOSS OF</span>
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607
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<pre style="margin: 0;">+<span id="LC607" class="line" lang="plaintext">DATA OR DATA BEING RENDERED INACCURATE OR LOSSES SUSTAINED BY YOU OR THIRD</span>
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608
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<pre style="margin: 0;">+<span id="LC608" class="line" lang="plaintext">PARTIES OR A FAILURE OF THE PROGRAM TO OPERATE WITH ANY OTHER PROGRAMS),</span>
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<td class="diff-line-num new new_line" data-linenumber="609" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
609
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<pre style="margin: 0;">+<span id="LC609" class="line" lang="plaintext">EVEN IF SUCH HOLDER OR OTHER PARTY HAS BEEN ADVISED OF THE POSSIBILITY OF</span>
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610
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<pre style="margin: 0;">+<span id="LC610" class="line" lang="plaintext">SUCH DAMAGES.</span>
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611
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<pre style="margin: 0;">+<span id="LC611" class="line" lang="plaintext"></span>
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612
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<pre style="margin: 0;">+<span id="LC612" class="line" lang="plaintext"> 17. Interpretation of Sections 15 and 16.</span>
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613
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<pre style="margin: 0;">+<span id="LC613" class="line" lang="plaintext"></span>
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614
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<pre style="margin: 0;">+<span id="LC614" class="line" lang="plaintext"> If the disclaimer of warranty and limitation of liability provided</span>
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615
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<pre style="margin: 0;">+<span id="LC615" class="line" lang="plaintext">above cannot be given local legal effect according to their terms,</span>
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616
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<pre style="margin: 0;">+<span id="LC616" class="line" lang="plaintext">reviewing courts shall apply local law that most closely approximates</span>
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617
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<pre style="margin: 0;">+<span id="LC617" class="line" lang="plaintext">an absolute waiver of all civil liability in connection with the</span>
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618
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<pre style="margin: 0;">+<span id="LC618" class="line" lang="plaintext">Program, unless a warranty or assumption of liability accompanies a</span>
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619
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<pre style="margin: 0;">+<span id="LC619" class="line" lang="plaintext">copy of the Program in return for a fee.</span>
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620
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<pre style="margin: 0;">+<span id="LC620" class="line" lang="plaintext"></span>
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621
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<pre style="margin: 0;">+<span id="LC621" class="line" lang="plaintext"> END OF TERMS AND CONDITIONS</span>
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622
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<pre style="margin: 0;">+<span id="LC622" class="line" lang="plaintext"></span>
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623
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<pre style="margin: 0;">+<span id="LC623" class="line" lang="plaintext"> How to Apply These Terms to Your New Programs</span>
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624
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<pre style="margin: 0;">+<span id="LC624" class="line" lang="plaintext"></span>
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625
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<pre style="margin: 0;">+<span id="LC625" class="line" lang="plaintext"> If you develop a new program, and you want it to be of the greatest</span>
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626
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<pre style="margin: 0;">+<span id="LC626" class="line" lang="plaintext">possible use to the public, the best way to achieve this is to make it</span>
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627
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<pre style="margin: 0;">+<span id="LC627" class="line" lang="plaintext">free software which everyone can redistribute and change under these terms.</span>
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628
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<pre style="margin: 0;">+<span id="LC628" class="line" lang="plaintext"></span>
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629
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<pre style="margin: 0;">+<span id="LC629" class="line" lang="plaintext"> To do so, attach the following notices to the program. It is safest</span>
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630
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<pre style="margin: 0;">+<span id="LC630" class="line" lang="plaintext">to attach them to the start of each source file to most effectively</span>
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631
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<pre style="margin: 0;">+<span id="LC631" class="line" lang="plaintext">state the exclusion of warranty; and each file should have at least</span>
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632
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<pre style="margin: 0;">+<span id="LC632" class="line" lang="plaintext">the "copyright" line and a pointer to where the full notice is found.</span>
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633
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<pre style="margin: 0;">+<span id="LC633" class="line" lang="plaintext"></span>
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634
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<pre style="margin: 0;">+<span id="LC634" class="line" lang="plaintext"> <one line to give the program's name and a brief idea of what it does.></span>
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635
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<pre style="margin: 0;">+<span id="LC635" class="line" lang="plaintext"> Copyright (C) <year> <name of author></span>
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636
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<pre style="margin: 0;">+<span id="LC636" class="line" lang="plaintext"></span>
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637
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<pre style="margin: 0;">+<span id="LC637" class="line" lang="plaintext"> This program is free software: you can redistribute it and/or modify</span>
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638
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<pre style="margin: 0;">+<span id="LC638" class="line" lang="plaintext"> it under the terms of the GNU General Public License as published by</span>
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639
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<pre style="margin: 0;">+<span id="LC639" class="line" lang="plaintext"> the Free Software Foundation, either version 3 of the License, or</span>
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640
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<pre style="margin: 0;">+<span id="LC640" class="line" lang="plaintext"> (at your option) any later version.</span>
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641
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<pre style="margin: 0;">+<span id="LC641" class="line" lang="plaintext"></span>
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642
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<pre style="margin: 0;">+<span id="LC642" class="line" lang="plaintext"> This program is distributed in the hope that it will be useful,</span>
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643
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<pre style="margin: 0;">+<span id="LC643" class="line" lang="plaintext"> but WITHOUT ANY WARRANTY; without even the implied warranty of</span>
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644
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<pre style="margin: 0;">+<span id="LC644" class="line" lang="plaintext"> MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the</span>
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645
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<pre style="margin: 0;">+<span id="LC645" class="line" lang="plaintext"> GNU General Public License for more details.</span>
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646
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<pre style="margin: 0;">+<span id="LC646" class="line" lang="plaintext"></span>
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647
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<pre style="margin: 0;">+<span id="LC647" class="line" lang="plaintext"> You should have received a copy of the GNU General Public License</span>
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648
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<pre style="margin: 0;">+<span id="LC648" class="line" lang="plaintext"> along with this program. If not, see <http://www.gnu.org/licenses/>.</span>
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649
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<pre style="margin: 0;">+<span id="LC649" class="line" lang="plaintext"></span>
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650
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<pre style="margin: 0;">+<span id="LC650" class="line" lang="plaintext">Also add information on how to contact you by electronic and paper mail.</span>
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651
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<pre style="margin: 0;">+<span id="LC651" class="line" lang="plaintext"></span>
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652
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<pre style="margin: 0;">+<span id="LC652" class="line" lang="plaintext"> If the program does terminal interaction, make it output a short</span>
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653
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<pre style="margin: 0;">+<span id="LC653" class="line" lang="plaintext">notice like this when it starts in an interactive mode:</span>
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654
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<pre style="margin: 0;">+<span id="LC654" class="line" lang="plaintext"></span>
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655
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<pre style="margin: 0;">+<span id="LC655" class="line" lang="plaintext"> <program> Copyright (C) <year> <name of author></span>
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656
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<pre style="margin: 0;">+<span id="LC656" class="line" lang="plaintext"> This program comes with ABSOLUTELY NO WARRANTY; for details type `show w'.</span>
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657
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<pre style="margin: 0;">+<span id="LC657" class="line" lang="plaintext"> This is free software, and you are welcome to redistribute it</span>
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658
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<pre style="margin: 0;">+<span id="LC658" class="line" lang="plaintext"> under certain conditions; type `show c' for details.</span>
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659
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<pre style="margin: 0;">+<span id="LC659" class="line" lang="plaintext"></span>
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660
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<pre style="margin: 0;">+<span id="LC660" class="line" lang="plaintext">The hypothetical commands `show w' and `show c' should show the appropriate</span>
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661
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<pre style="margin: 0;">+<span id="LC661" class="line" lang="plaintext">parts of the General Public License. Of course, your program's commands</span>
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662
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<pre style="margin: 0;">+<span id="LC662" class="line" lang="plaintext">might be different; for a GUI interface, you would use an "about box".</span>
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663
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<pre style="margin: 0;">+<span id="LC663" class="line" lang="plaintext"></span>
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664
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<pre style="margin: 0;">+<span id="LC664" class="line" lang="plaintext"> You should also get your employer (if you work as a programmer) or school,</span>
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665
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<pre style="margin: 0;">+<span id="LC665" class="line" lang="plaintext">if any, to sign a "copyright disclaimer" for the program, if necessary.</span>
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666
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<pre style="margin: 0;">+<span id="LC666" class="line" lang="plaintext">For more information on this, and how to apply and follow the GNU GPL, see</span>
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667
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<pre style="margin: 0;">+<span id="LC667" class="line" lang="plaintext"><http://www.gnu.org/licenses/>.</span>
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<pre style="margin: 0;">+<span id="LC668" class="line" lang="plaintext"></span>
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669
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<pre style="margin: 0;">+<span id="LC669" class="line" lang="plaintext"> The GNU General Public License does not permit incorporating your program</span>
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670
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<pre style="margin: 0;">+<span id="LC670" class="line" lang="plaintext">into proprietary programs. If your program is a subroutine library, you</span>
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<pre style="margin: 0;">+<span id="LC671" class="line" lang="plaintext">may consider it more useful to permit linking proprietary applications with</span>
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672
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<pre style="margin: 0;">+<span id="LC672" class="line" lang="plaintext">the library. If this is what you want to do, use the GNU Lesser General</span>
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673
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<pre style="margin: 0;">+<span id="LC673" class="line" lang="plaintext">Public License instead of this License. But first, please read</span>
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674
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<pre style="margin: 0;">+<span id="LC674" class="line" lang="plaintext"><http://www.gnu.org/philosophy/why-not-lgpl.html>.</span></pre>
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<li id="25a94da7773e5b037a2a7fd18bfbff6556149f1a">
<a href="https://salsa.debian.org/med-team/nanoplot/-/compare/35ac3dd7570ee601d826d8097ce4bb42a18d499b...57b98e9246eae2217e5a08735febdf7a8702b228#25a94da7773e5b037a2a7fd18bfbff6556149f1a"><strong>NanoPlot.egg-info/PKG-INFO</strong></a>
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1
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<pre style="margin: 0;"> <span id="LC1" class="line" lang="plaintext">Metadata-Version: 2.1</span>
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="plaintext">Name: NanoPlot</span>
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3
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<pre style="margin: 0;">-<span id="LC3" class="line" lang="plaintext">Version: 1.<span class="idiff left right">29.0</span></span>
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3
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext">Version: 1.<span class="idiff left right">30.1</span></span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext">Summary: Plotting suite for Oxford Nanopore sequencing data and alignments</span>
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5
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="plaintext">Home-page: https://github.com/wdecoster/NanoPlot</span>
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="plaintext">Author: Wouter De Coster</span>
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="plaintext">Author-email: decosterwouter@gmail.com</span>
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<pre style="margin: 0;">-<span id="LC8" class="line" lang="plaintext">License: <span class="idiff left right">MIT</span></span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext">License: <span class="idiff left right">GPLv3</span></span>
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="plaintext">Description: # NanoPlot</span>
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="plaintext"> Plotting tool for long read sequencing data and alignments. </span>
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="plaintext"> </span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="175" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="175" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -175,6 +175,8 @@ Description: # NanoPlot</td>
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<pre style="margin: 0;"> <span id="LC175" class="line" lang="plaintext"> ## CITATION</span>
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<pre style="margin: 0;"> <span id="LC176" class="line" lang="plaintext"> If you use this tool, please consider citing our [publication](https://academic.oup.com/bioinformatics/advance-article/doi/10.1093/bioinformatics/bty149/4934939).</span>
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<pre style="margin: 0;"> <span id="LC177" class="line" lang="plaintext"> </span>
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<pre style="margin: 0;">+<span id="LC178" class="line" lang="plaintext"> Copyright: 2016-2020 Wouter De Coster <decosterwouter@gmail.com></span>
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<pre style="margin: 0;">+<span id="LC179" class="line" lang="plaintext"> </span>
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<pre style="margin: 0;"> <span id="LC180" class="line" lang="plaintext">Keywords: nanopore sequencing plotting quality control</span>
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181
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<pre style="margin: 0;"> <span id="LC181" class="line" lang="plaintext">Platform: UNKNOWN</span>
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182
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<pre style="margin: 0;"> <span id="LC182" class="line" lang="plaintext">Classifier: Development Status :: 4 - Beta</span>
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<a href="https://salsa.debian.org/med-team/nanoplot/-/compare/35ac3dd7570ee601d826d8097ce4bb42a18d499b...57b98e9246eae2217e5a08735febdf7a8702b228#8b9bda71a20c83dd855d105a9ea743e447e051ac"><strong>NanoPlot.egg-info/SOURCES.txt</strong>
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="plaintext">MANIFEST.in</span>
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<pre style="margin: 0;">-<span id="LC2" class="line" lang="plaintext">README.md</span>
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<pre style="margin: 0;">-<span id="LC3" class="line" lang="plaintext">setup.py</span>
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<pre style="margin: 0;">-<span id="LC4" class="line" lang="plaintext">NanoPlot.egg-info/PKG-INFO</span>
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<pre style="margin: 0;">-<span id="LC5" class="line" lang="plaintext">NanoPlot.egg-info/SOURCES.txt</span>
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<pre style="margin: 0;">-<span id="LC6" class="line" lang="plaintext">NanoPlot.egg-info/dependency_links.txt</span>
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<pre style="margin: 0;">-<span id="LC7" class="line" lang="plaintext">NanoPlot.egg-info/entry_points.txt</span>
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<pre style="margin: 0;">-<span id="LC8" class="line" lang="plaintext">NanoPlot.egg-info/requires.txt</span>
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<pre style="margin: 0;">-<span id="LC9" class="line" lang="plaintext">NanoPlot.egg-info/top_level.txt</span>
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<pre style="margin: 0;">-<span id="LC10" class="line" lang="plaintext">extra/color_options.txt</span>
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<pre style="margin: 0;">-<span id="LC11" class="line" lang="plaintext">nanoplot/NanoPlot.py</span>
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<pre style="margin: 0;">-<span id="LC12" class="line" lang="plaintext">nanoplot/__init__.py</span>
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<pre style="margin: 0;">-<span id="LC13" class="line" lang="plaintext">nanoplot/filteroptions.py</span>
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<pre style="margin: 0;">-<span id="LC14" class="line" lang="plaintext">nanoplot/utils.py</span>
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<pre style="margin: 0;">-<span id="LC15" class="line" lang="plaintext">nanoplot/version.py</span>
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<pre style="margin: 0;">-<span id="LC16" class="line" lang="plaintext">nanoplotter/__init__.py</span>
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<pre style="margin: 0;">-<span id="LC17" class="line" lang="plaintext">nanoplotter/nanoplotter_main.py</span>
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<pre style="margin: 0;">-<span id="LC18" class="line" lang="plaintext">nanoplotter/plot.py</span>
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<pre style="margin: 0;">-<span id="LC19" class="line" lang="plaintext">nanoplotter/spatial_heatmap.py</span>
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<pre style="margin: 0;">-<span id="LC20" class="line" lang="plaintext">nanoplotter/timeplots.py</span>
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<pre style="margin: 0;">-<span id="LC21" class="line" lang="plaintext">scripts/add_barcodes_to_summary.py</span>
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<pre style="margin: 0;">-<span id="LC22" class="line" lang="plaintext">scripts/sequencing_speed_only.py</span>
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<pre style="margin: 0;">-<span id="LC23" class="line" lang="plaintext">scripts/split_summary_on_barcodes.py</span>
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<pre style="margin: 0;">-<span id="LC24" class="line" lang="plaintext">scripts/test.sh</span></pre>
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<a href="https://salsa.debian.org/med-team/nanoplot/-/compare/35ac3dd7570ee601d826d8097ce4bb42a18d499b...57b98e9246eae2217e5a08735febdf7a8702b228#d9c782fa56a1bc8534d84cd139167c489b05e05f"><strong>NanoPlot.egg-info/requires.txt</strong>
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="plaintext">biopython</span>
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<pre style="margin: 0;">-<span id="LC2" class="line" lang="plaintext">pysam>0.10.0.0</span>
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<pre style="margin: 0;">-<span id="LC3" class="line" lang="plaintext">pandas>=0.22.0</span>
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<pre style="margin: 0;">-<span id="LC4" class="line" lang="plaintext">numpy</span>
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<pre style="margin: 0;">-<span id="LC5" class="line" lang="plaintext">scipy</span>
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6
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<pre style="margin: 0;">-<span id="LC6" class="line" lang="plaintext">python-dateutil</span>
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7
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<pre style="margin: 0;">-<span id="LC7" class="line" lang="plaintext">seaborn>=0.9.0</span>
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8
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<pre style="margin: 0;">-<span id="LC8" class="line" lang="plaintext">matplotlib>=3.1.3</span>
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9
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<pre style="margin: 0;">-<span id="LC9" class="line" lang="plaintext">nanoget>=1.9.0</span>
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10
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<pre style="margin: 0;">-<span id="LC10" class="line" lang="plaintext">nanomath>=0.23.1</span>
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11
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<pre style="margin: 0;">-<span id="LC11" class="line" lang="plaintext">pauvre==0.1.86</span>
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12
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<pre style="margin: 0;">-<span id="LC12" class="line" lang="plaintext">statsmodels==0.10.1</span>
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13
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<pre style="margin: 0;">-<span id="LC13" class="line" lang="plaintext">plotly>=4.1.0</span></pre>
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<a href="https://salsa.debian.org/med-team/nanoplot/-/compare/35ac3dd7570ee601d826d8097ce4bb42a18d499b...57b98e9246eae2217e5a08735febdf7a8702b228#7d26833a43d8865f6d9679068f6f9ee7d6e13dcf"><strong>PKG-INFO</strong></a>
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<pre style="margin: 0;"> <span id="LC1" class="line" lang="plaintext">Metadata-Version: 2.1</span>
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="plaintext">Name: NanoPlot</span>
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3
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<pre style="margin: 0;">-<span id="LC3" class="line" lang="plaintext">Version: 1.<span class="idiff left right">29.0</span></span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext">Version: 1.<span class="idiff left right">30.1</span></span>
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4
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext">Summary: Plotting suite for Oxford Nanopore sequencing data and alignments</span>
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5
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5
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="plaintext">Home-page: https://github.com/wdecoster/NanoPlot</span>
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6
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6
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="plaintext">Author: Wouter De Coster</span>
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7
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7
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="plaintext">Author-email: decosterwouter@gmail.com</span>
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8
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<pre style="margin: 0;">-<span id="LC8" class="line" lang="plaintext">License: <span class="idiff left right">MIT</span></span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext">License: <span class="idiff left right">GPLv3</span></span>
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="plaintext">Description: # NanoPlot</span>
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="plaintext"> Plotting tool for long read sequencing data and alignments. </span>
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="plaintext"> </span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="175" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="175" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -175,6 +175,8 @@ Description: # NanoPlot</td>
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<pre style="margin: 0;"> <span id="LC175" class="line" lang="plaintext"> ## CITATION</span>
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<pre style="margin: 0;"> <span id="LC176" class="line" lang="plaintext"> If you use this tool, please consider citing our [publication](https://academic.oup.com/bioinformatics/advance-article/doi/10.1093/bioinformatics/bty149/4934939).</span>
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<pre style="margin: 0;"> <span id="LC177" class="line" lang="plaintext"> </span>
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<pre style="margin: 0;">+<span id="LC178" class="line" lang="plaintext"> Copyright: 2016-2020 Wouter De Coster <decosterwouter@gmail.com></span>
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<pre style="margin: 0;">+<span id="LC179" class="line" lang="plaintext"> </span>
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<pre style="margin: 0;"> <span id="LC180" class="line" lang="plaintext">Keywords: nanopore sequencing plotting quality control</span>
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<pre style="margin: 0;"> <span id="LC181" class="line" lang="plaintext">Platform: UNKNOWN</span>
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<pre style="margin: 0;"> <span id="LC182" class="line" lang="plaintext">Classifier: Development Status :: 4 - Beta</span>
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<a href="https://salsa.debian.org/med-team/nanoplot/-/compare/35ac3dd7570ee601d826d8097ce4bb42a18d499b...57b98e9246eae2217e5a08735febdf7a8702b228#8ec9a00bfd09b3190ac6b22251dbb1aa95a0579d"><strong>README.md</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -166,3 +166,5 @@ Bivariate plot of mapping quality against basecall quality||||x|||dot, hex, kde</td>
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<pre style="margin: 0;"> <span id="LC166" class="line" lang="markdown"></span>
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<pre style="margin: 0;"> <span id="LC167" class="line" lang="markdown"><span class="gu" style="color: #800080; font-weight: 600;">## CITATION</span></span>
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<pre style="margin: 0;"> <span id="LC168" class="line" lang="markdown">If you use this tool, please consider citing our <span class="p">[</span><span class="nv" style="color: #008080;">publication</span><span class="p">](</span><span class="sx" style="color: #d14;">https://academic.oup.com/bioinformatics/advance-article/doi/10.1093/bioinformatics/bty149/4934939</span><span class="p">)</span>.</span>
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<pre style="margin: 0;">+<span id="LC169" class="line" lang="markdown"></span>
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<pre style="margin: 0;">+<span id="LC170" class="line" lang="markdown">Copyright: 2016-2020 Wouter De Coster <span class="nv" style="color: #008080;"><decosterwouter@gmail.com></span></span></pre>
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<a href="https://salsa.debian.org/med-team/nanoplot/-/compare/35ac3dd7570ee601d826d8097ce4bb42a18d499b...57b98e9246eae2217e5a08735febdf7a8702b228#561b88e19de321ca62c7590bbb350765fb110905"><strong>README.rst</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">NanoPlot</span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="plaintext">========</span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="plaintext">Plotting tool for long read sequencing data and alignments.</span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext">|Twitter URL| |conda badge| |Build Status|</span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext">NanoPlot is also available as a `web service <http://nanoplot.bioinf.be>`__.</span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="plaintext">~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~</span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="plaintext">.. figure:: https://github.com/wdecoster/NanoPlot/blob/master/examples/scaled_Log_Downsampled_LengthvsQualityScatterPlot_kde.png</span>
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="plaintext"> :alt: Example plot</span>
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="plaintext"> Example plot</span>
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="plaintext">The example plot above shows a bivariate plot comparing log transformed</span>
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="plaintext">read length with average basecall Phred quality score. More examples can</span>
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<pre style="margin: 0;">+<span id="LC18" class="line" lang="plaintext">be found in the `gallery on my blog ‘Gigabase Or</span>
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="plaintext">Gigabyte’. <https://gigabaseorgigabyte.wordpress.com/2017/06/01/example-gallery-of-nanoplot/>`__</span>
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<pre style="margin: 0;">+<span id="LC20" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC21" class="line" lang="plaintext">In addition to various plots also a NanoStats file is created</span>
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<pre style="margin: 0;">+<span id="LC22" class="line" lang="plaintext">summarizing key features of the dataset.</span>
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<pre style="margin: 0;">+<span id="LC23" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC24" class="line" lang="plaintext">| This script performs data extraction from Oxford Nanopore sequencing</span>
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<pre style="margin: 0;">+<span id="LC25" class="line" lang="plaintext"> data in the following formats:</span>
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<pre style="margin: 0;">+<span id="LC26" class="line" lang="plaintext">| - fastq files</span>
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<pre style="margin: 0;">+<span id="LC27" class="line" lang="plaintext">| (can be bgzip, bzip2 or gzip compressed)</span>
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<pre style="margin: 0;">+<span id="LC28" class="line" lang="plaintext">| - fastq files generated by albacore, guppy or MinKNOW containing</span>
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<pre style="margin: 0;">+<span id="LC29" class="line" lang="plaintext"> additional information</span>
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<pre style="margin: 0;">+<span id="LC30" class="line" lang="plaintext">| (can be bgzip, bzip2 or gzip compressed)</span>
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<pre style="margin: 0;">+<span id="LC31" class="line" lang="plaintext">| - sorted bam files</span>
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<pre style="margin: 0;">+<span id="LC32" class="line" lang="plaintext">| - sequencing_summary.txt output table generated by albacore, guppy or</span>
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<pre style="margin: 0;">+<span id="LC33" class="line" lang="plaintext"> MinKnow basecalling (can be gzip, bz2, zip and xz compressed) - fasta</span>
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<pre style="margin: 0;">+<span id="LC34" class="line" lang="plaintext"> files (can be bgzip, bzip2 or gzip compressed)</span>
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<pre style="margin: 0;">+<span id="LC35" class="line" lang="plaintext">| Multiple files of the same type can be offered simultaneously</span>
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<pre style="margin: 0;">+<span id="LC36" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC37" class="line" lang="plaintext">INSTALLATION</span>
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<pre style="margin: 0;">+<span id="LC38" class="line" lang="plaintext">~~~~~~~~~~~~</span>
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<pre style="margin: 0;">+<span id="LC39" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC40" class="line" lang="plaintext">``pip install NanoPlot``</span>
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<pre style="margin: 0;">+<span id="LC41" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC42" class="line" lang="plaintext">| Upgrade to a newer version using:</span>
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<pre style="margin: 0;">+<span id="LC43" class="line" lang="plaintext">| ``pip install NanoPlot --upgrade``</span>
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<pre style="margin: 0;">+<span id="LC44" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC45" class="line" lang="plaintext">or</span>
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<pre style="margin: 0;">+<span id="LC46" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC47" class="line" lang="plaintext">| |conda badge|</span>
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<pre style="margin: 0;">+<span id="LC48" class="line" lang="plaintext">| ``conda install -c bioconda nanoplot``</span>
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<pre style="margin: 0;">+<span id="LC49" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC50" class="line" lang="plaintext">The script is written for python3.</span>
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<pre style="margin: 0;">+<span id="LC51" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC52" class="line" lang="plaintext">OUTPUT</span>
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<pre style="margin: 0;">+<span id="LC53" class="line" lang="plaintext">~~~~~~</span>
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<pre style="margin: 0;">+<span id="LC54" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC55" class="line" lang="plaintext">NanoPlot creates: - a statistical summary - a number of plots - a html</span>
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<pre style="margin: 0;">+<span id="LC56" class="line" lang="plaintext">summary file</span>
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<pre style="margin: 0;">+<span id="LC57" class="line" lang="plaintext"></span>
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58
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<pre style="margin: 0;">+<span id="LC58" class="line" lang="plaintext">USAGE</span>
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59
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<pre style="margin: 0;">+<span id="LC59" class="line" lang="plaintext">~~~~~</span>
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60
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<pre style="margin: 0;">+<span id="LC60" class="line" lang="plaintext"></span>
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61
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<pre style="margin: 0;">+<span id="LC61" class="line" lang="plaintext">::</span>
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62
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<pre style="margin: 0;">+<span id="LC62" class="line" lang="plaintext"></span>
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63
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<pre style="margin: 0;">+<span id="LC63" class="line" lang="plaintext"> NanoPlot [-h] [-v] [-t THREADS] [--verbose] [--store] [--raw]</span>
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64
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<pre style="margin: 0;">+<span id="LC64" class="line" lang="plaintext"> [-o OUTDIR] [-p PREFIX] [--maxlength N] [--minlength N]</span>
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65
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<pre style="margin: 0;">+<span id="LC65" class="line" lang="plaintext"> [--drop_outliers] [--downsample N] [--loglength]</span>
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66
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<pre style="margin: 0;">+<span id="LC66" class="line" lang="plaintext"> [--percentqual] [--alength] [--minqual N]</span>
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67
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<pre style="margin: 0;">+<span id="LC67" class="line" lang="plaintext"> [--readtype {1D,2D,1D2}] [--barcoded] [--runtime_until N]</span>
</pre>
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68
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<pre style="margin: 0;">+<span id="LC68" class="line" lang="plaintext"> [-c COLOR]</span>
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69
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<pre style="margin: 0;">+<span id="LC69" class="line" lang="plaintext"> [-f {eps,jpeg,jpg,pdf,pgf,png,ps,raw,rgba,svg,svgz,tif,tiff}]</span>
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70
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<pre style="margin: 0;">+<span id="LC70" class="line" lang="plaintext"> [--plots [{kde,hex,dot,pauvre} [{kde,hex,dot,pauvre} ...]]]</span>
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71
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<pre style="margin: 0;">+<span id="LC71" class="line" lang="plaintext"> [--listcolors] [--no-N50] [--N50] [--title TITLE]</span>
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72
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<pre style="margin: 0;">+<span id="LC72" class="line" lang="plaintext"> (--fastq file [file ...] | --fasta file [file ...] | --fastq_rich file [file ...] | --fastq_minimal file [file ...] | --summary file [file ...] | --bam file [file ...] | --cram file [file ...] | --pickle pickle)</span>
</pre>
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73
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<pre style="margin: 0;">+<span id="LC73" class="line" lang="plaintext"></span>
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74
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<pre style="margin: 0;">+<span id="LC74" class="line" lang="plaintext"></span>
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75
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<pre style="margin: 0;">+<span id="LC75" class="line" lang="plaintext"> General options:</span>
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76
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<pre style="margin: 0;">+<span id="LC76" class="line" lang="plaintext"> -h, --help show the help and exit</span>
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77
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<pre style="margin: 0;">+<span id="LC77" class="line" lang="plaintext"> -v, --version Print version and exit.</span>
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78
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<pre style="margin: 0;">+<span id="LC78" class="line" lang="plaintext"> -t, --threads THREADS Set the allowed number of threads to be used by the script</span>
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79
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<pre style="margin: 0;">+<span id="LC79" class="line" lang="plaintext"> --verbose Write log messages also to terminal.</span>
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80
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<pre style="margin: 0;">+<span id="LC80" class="line" lang="plaintext"> --store Store the extracted data in a pickle file for future plotting.</span>
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81
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<pre style="margin: 0;">+<span id="LC81" class="line" lang="plaintext"> --raw Store the extracted data in tab separated file.</span>
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<pre style="margin: 0;">+<span id="LC82" class="line" lang="plaintext"> -o, --outdir OUTDIR Specify directory in which output has to be created.</span>
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<pre style="margin: 0;">+<span id="LC83" class="line" lang="plaintext"> -p, --prefix PREFIX Specify an optional prefix to be used for the output files.</span>
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84
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<pre style="margin: 0;">+<span id="LC84" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC85" class="line" lang="plaintext"> Options for filtering or transforming input prior to plotting:</span>
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86
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<pre style="margin: 0;">+<span id="LC86" class="line" lang="plaintext"> --maxlength N Hide reads longer than length specified.</span>
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87
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<pre style="margin: 0;">+<span id="LC87" class="line" lang="plaintext"> --minlength N Hide reads shorter than length specified.</span>
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<pre style="margin: 0;">+<span id="LC88" class="line" lang="plaintext"> --drop_outliers Drop outlier reads with extreme long length.</span>
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89
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<pre style="margin: 0;">+<span id="LC89" class="line" lang="plaintext"> --downsample N Reduce dataset to N reads by random sampling.</span>
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<pre style="margin: 0;">+<span id="LC90" class="line" lang="plaintext"> --loglength Logarithmic scaling of lengths in plots.</span>
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<pre style="margin: 0;">+<span id="LC91" class="line" lang="plaintext"> --percentqual Use qualities as theoretical percent identities.</span>
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<pre style="margin: 0;">+<span id="LC92" class="line" lang="plaintext"> --alength Use aligned read lengths rather than sequenced length (bam mode)</span>
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<pre style="margin: 0;">+<span id="LC93" class="line" lang="plaintext"> --minqual N Drop reads with an average quality lower than specified.</span>
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<pre style="margin: 0;">+<span id="LC94" class="line" lang="plaintext"> --runtime_until N Only take the N first hours of a run</span>
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<pre style="margin: 0;">+<span id="LC95" class="line" lang="plaintext"> --readtype Which read type to extract information about from a summary file.</span>
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<pre style="margin: 0;">+<span id="LC96" class="line" lang="plaintext"> One of 1D (default), 2D, 1D2</span>
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<pre style="margin: 0;">+<span id="LC97" class="line" lang="plaintext"> --barcoded Use if you want to split the summary file by barcode</span>
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<pre style="margin: 0;">+<span id="LC98" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC99" class="line" lang="plaintext"> Options for customizing the plots created:</span>
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<pre style="margin: 0;">+<span id="LC100" class="line" lang="plaintext"> -c, --color COLOR Specify a color for the plots, must be a valid matplotlib color</span>
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<pre style="margin: 0;">+<span id="LC101" class="line" lang="plaintext"> -f, --format Specify the output format of the plots.</span>
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<pre style="margin: 0;">+<span id="LC102" class="line" lang="plaintext"> One of png [default], eps,jpeg,jpg,pdf,pgf,ps,raw,rgba,svg,svgz,tif,tiff</span>
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<pre style="margin: 0;">+<span id="LC103" class="line" lang="plaintext"> --plots Specify which bivariate plots have to be made.</span>
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<pre style="margin: 0;">+<span id="LC104" class="line" lang="plaintext"> One or more of 'dot' (default), 'kde' (default), 'hex' and 'pauvre'</span>
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<pre style="margin: 0;">+<span id="LC105" class="line" lang="plaintext"> --listcolors List the colors which are available for plotting and exit.</span>
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<pre style="margin: 0;">+<span id="LC106" class="line" lang="plaintext"> --no-N50 Hide the N50 mark in the read length histogram</span>
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<pre style="margin: 0;">+<span id="LC107" class="line" lang="plaintext"> --N50 Show the N50 mark in the read length histogram</span>
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<pre style="margin: 0;">+<span id="LC108" class="line" lang="plaintext"> --title TITLE Add a title to all plots, requires quoting if using spaces</span>
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<td class="diff-line-num new new_line" data-linenumber="109" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
109
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<pre style="margin: 0;">+<span id="LC109" class="line" lang="plaintext"></span>
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<td class="diff-line-num new new_line" data-linenumber="110" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
110
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<pre style="margin: 0;">+<span id="LC110" class="line" lang="plaintext"> Input data sources, one of these is required.:</span>
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<td class="diff-line-num new new_line" data-linenumber="111" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
111
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<pre style="margin: 0;">+<span id="LC111" class="line" lang="plaintext"> --fastq file [file ...]</span>
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<td class="diff-line-num new new_line" data-linenumber="112" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
112
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<pre style="margin: 0;">+<span id="LC112" class="line" lang="plaintext"> Data is in one or more default fastq file(s).</span>
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<td class="diff-line-num new new_line" data-linenumber="113" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
113
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<pre style="margin: 0;">+<span id="LC113" class="line" lang="plaintext"> --fasta file [file ...]</span>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="114" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
114
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<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC114" class="line" lang="plaintext"> Data is in one or more default fasta file(s).</span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="115" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
115
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<pre style="margin: 0;">+<span id="LC115" class="line" lang="plaintext"> --fastq_rich file [file ...]</span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="116" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
116
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<pre style="margin: 0;">+<span id="LC116" class="line" lang="plaintext"> Data is in one or more fastq file(s) generated by albacore or MinKNOW with</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="117" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
117
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<pre style="margin: 0;">+<span id="LC117" class="line" lang="plaintext"> additional information concerning channel and time.</span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="118" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
118
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<pre style="margin: 0;">+<span id="LC118" class="line" lang="plaintext"> --fastq_minimal file [file ...]</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="119" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
119
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<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC119" class="line" lang="plaintext"> Data is in one or more fastq file(s) generated by albacore or MinKNOW with</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="120" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
120
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<pre style="margin: 0;">+<span id="LC120" class="line" lang="plaintext"> additional information concerning channel and time. Minimal data is extracted</span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="121" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
121
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<pre style="margin: 0;">+<span id="LC121" class="line" lang="plaintext"> swiftly without elaborate checks.</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="122" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
122
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<pre style="margin: 0;">+<span id="LC122" class="line" lang="plaintext"> --summary file [file ...]</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="123" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
123
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<pre style="margin: 0;">+<span id="LC123" class="line" lang="plaintext"> Data is in one or more summary file(s) generated by albacore or guppy.</span>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="124" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
124
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<pre style="margin: 0;">+<span id="LC124" class="line" lang="plaintext"> --bam file [file ...]</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="125" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
125
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<pre style="margin: 0;">+<span id="LC125" class="line" lang="plaintext"> Data is in one or more sorted bam file(s).</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="126" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
126
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<pre style="margin: 0;">+<span id="LC126" class="line" lang="plaintext"> --cram file [file ...]</span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="127" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
127
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<pre style="margin: 0;">+<span id="LC127" class="line" lang="plaintext"> Data is in one or more sorted cram file(s).</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="128" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
128
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<pre style="margin: 0;">+<span id="LC128" class="line" lang="plaintext"> --pickle pickle Data is a pickle file stored earlier.</span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="129" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
129
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<pre style="margin: 0;">+<span id="LC129" class="line" lang="plaintext"></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="130" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
130
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<pre style="margin: 0;">+<span id="LC130" class="line" lang="plaintext">NOTES</span>
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<td class="diff-line-num new new_line" data-linenumber="131" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
131
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<pre style="margin: 0;">+<span id="LC131" class="line" lang="plaintext">~~~~~</span>
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<td class="diff-line-num new new_line" data-linenumber="132" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
132
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<pre style="margin: 0;">+<span id="LC132" class="line" lang="plaintext"></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="133" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
133
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<pre style="margin: 0;">+<span id="LC133" class="line" lang="plaintext">- ``--downsample`` won’t save you tons of time, as down sampling is</span>
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<td class="diff-line-num new new_line" data-linenumber="134" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
134
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<pre style="margin: 0;">+<span id="LC134" class="line" lang="plaintext"> only done after collecting all data and probably would only make a</span>
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135
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<pre style="margin: 0;">+<span id="LC135" class="line" lang="plaintext"> difference for a huge amount of data. If you want to save time you</span>
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136
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<pre style="margin: 0;">+<span id="LC136" class="line" lang="plaintext"> could down sample your data upfront. Note also that extracting</span>
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137
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<pre style="margin: 0;">+<span id="LC137" class="line" lang="plaintext"> information from a summary file is faster than other formats, and</span>
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138
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<pre style="margin: 0;">+<span id="LC138" class="line" lang="plaintext"> that you can extract from multiple files simultaneously (which will</span>
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139
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<pre style="margin: 0;">+<span id="LC139" class="line" lang="plaintext"> happen in parallel then). Some plot types (especially kde) are slower</span>
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140
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<pre style="margin: 0;">+<span id="LC140" class="line" lang="plaintext"> than others and you can take a look at the input for ``--plots`` to</span>
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141
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<pre style="margin: 0;">+<span id="LC141" class="line" lang="plaintext"> speed things up (default is to make both kde and dot plot). If you</span>
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142
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<pre style="margin: 0;">+<span id="LC142" class="line" lang="plaintext"> are only interested in say the read length histogram it is possible</span>
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143
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<pre style="margin: 0;">+<span id="LC143" class="line" lang="plaintext"> to write a script to just get you that and avoid wasting time on the</span>
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144
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<pre style="margin: 0;">+<span id="LC144" class="line" lang="plaintext"> rest. Let me know if you need any help here.</span>
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145
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<pre style="margin: 0;">+<span id="LC145" class="line" lang="plaintext"></span>
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146
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<pre style="margin: 0;">+<span id="LC146" class="line" lang="plaintext">EXAMPLE USAGE</span>
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147
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<pre style="margin: 0;">+<span id="LC147" class="line" lang="plaintext">~~~~~~~~~~~~~</span>
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148
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<pre style="margin: 0;">+<span id="LC148" class="line" lang="plaintext"></span>
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149
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<pre style="margin: 0;">+<span id="LC149" class="line" lang="plaintext">.. code:: bash</span>
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150
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<pre style="margin: 0;">+<span id="LC150" class="line" lang="plaintext"></span>
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151
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<pre style="margin: 0;">+<span id="LC151" class="line" lang="plaintext"> Nanoplot --summary sequencing_summary.txt --loglength -o summary-plots-log-transformed </span>
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152
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<pre style="margin: 0;">+<span id="LC152" class="line" lang="plaintext"> NanoPlot -t 2 --fastq reads1.fastq.gz reads2.fastq.gz --maxlength 40000 --plots hex dot</span>
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153
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<pre style="margin: 0;">+<span id="LC153" class="line" lang="plaintext"> NanoPlot -t 12 --color yellow --bam alignment1.bam alignment2.bam alignment3.bam --downsample 10000 -o bamplots_downsampled</span>
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154
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<pre style="margin: 0;">+<span id="LC154" class="line" lang="plaintext"></span>
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155
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<pre style="margin: 0;">+<span id="LC155" class="line" lang="plaintext">This script now also provides read length vs mean quality plots in the</span>
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156
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<pre style="margin: 0;">+<span id="LC156" class="line" lang="plaintext">‘`pauvre <https://github.com/conchoecia/pauvre>`__’-style from</span>
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157
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<pre style="margin: 0;">+<span id="LC157" class="line" lang="plaintext">[@conchoecia](https://github.com/conchoecia).</span>
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158
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<pre style="margin: 0;">+<span id="LC158" class="line" lang="plaintext"></span>
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159
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<pre style="margin: 0;">+<span id="LC159" class="line" lang="plaintext">ACKNOWLEDGMENTS/CONTRIBUTORS</span>
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160
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<pre style="margin: 0;">+<span id="LC160" class="line" lang="plaintext">----------------------------</span>
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161
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<pre style="margin: 0;">+<span id="LC161" class="line" lang="plaintext"></span>
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162
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<pre style="margin: 0;">+<span id="LC162" class="line" lang="plaintext">- Andreas Sjödin for building and maintaining conda recipes</span>
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163
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<pre style="margin: 0;">+<span id="LC163" class="line" lang="plaintext">- Darrin Schultz [@conchoecia](https://github.com/conchoecia) for</span>
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164
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<pre style="margin: 0;">+<span id="LC164" class="line" lang="plaintext"> Pauvre code</span>
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165
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<pre style="margin: 0;">+<span id="LC165" class="line" lang="plaintext">- [@alexomics](https://github.com/alexomics) for fixing the indentation</span>
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166
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<pre style="margin: 0;">+<span id="LC166" class="line" lang="plaintext"> of the printed stats</span>
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167
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<pre style="margin: 0;">+<span id="LC167" class="line" lang="plaintext">- Botond Sipos [@bsipos](https://github.com/bsipos) for speeding up the</span>
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168
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<pre style="margin: 0;">+<span id="LC168" class="line" lang="plaintext"> calculation of average quality scores</span>
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169
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<pre style="margin: 0;">+<span id="LC169" class="line" lang="plaintext"></span>
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170
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<pre style="margin: 0;">+<span id="LC170" class="line" lang="plaintext">CONTRIBUTING</span>
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171
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<pre style="margin: 0;">+<span id="LC171" class="line" lang="plaintext">------------</span>
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172
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<pre style="margin: 0;">+<span id="LC172" class="line" lang="plaintext"></span>
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173
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<pre style="margin: 0;">+<span id="LC173" class="line" lang="plaintext">I welcome all suggestions, bug reports, feature requests and</span>
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174
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<pre style="margin: 0;">+<span id="LC174" class="line" lang="plaintext">contributions. Please leave an</span>
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175
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<pre style="margin: 0;">+<span id="LC175" class="line" lang="plaintext">`issue <https://github.com/wdecoster/NanoPlot/issues>`__ or open a pull</span>
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176
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<pre style="margin: 0;">+<span id="LC176" class="line" lang="plaintext">request. I will usually respond within a day, or rarely within a few</span>
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177
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<pre style="margin: 0;">+<span id="LC177" class="line" lang="plaintext">days.</span>
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178
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<pre style="margin: 0;">+<span id="LC178" class="line" lang="plaintext"></span>
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179
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<pre style="margin: 0;">+<span id="LC179" class="line" lang="plaintext">PLOTS GENERATED</span>
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180
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<pre style="margin: 0;">+<span id="LC180" class="line" lang="plaintext">---------------</span>
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181
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<pre style="margin: 0;">+<span id="LC181" class="line" lang="plaintext"></span>
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182
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<pre style="margin: 0;">+<span id="LC182" class="line" lang="plaintext">+--------+--------+--------+--------+--------+--------+--------+--------+</span>
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<td class="diff-line-num new new_line" data-linenumber="183" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
183
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<pre style="margin: 0;">+<span id="LC183" class="line" lang="plaintext">| Plot | Fastq | Fast | F | Bam | S | O | Style |</span>
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184
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<pre style="margin: 0;">+<span id="LC184" class="line" lang="plaintext">| | | q_rich | astq_m | | ummary | ptions | |</span>
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185
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<pre style="margin: 0;">+<span id="LC185" class="line" lang="plaintext">| | | | inimal | | | | |</span>
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<td class="diff-line-num new new_line" data-linenumber="186" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
186
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<pre style="margin: 0;">+<span id="LC186" class="line" lang="plaintext">+========+========+========+========+========+========+========+========+</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="187" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
187
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<pre style="margin: 0;">+<span id="LC187" class="line" lang="plaintext">| His | x | x | x | x | x | N50 | |</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="188" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
188
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<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC188" class="line" lang="plaintext">| togram | | | | | | | |</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="189" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
189
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<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC189" class="line" lang="plaintext">| of | | | | | | | |</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="190" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
190
</td>
<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC190" class="line" lang="plaintext">| read | | | | | | | |</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="191" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
191
</td>
<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC191" class="line" lang="plaintext">| length | | | | | | | |</span>
</pre>
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<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="192" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
192
</td>
<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC192" class="line" lang="plaintext">+--------+--------+--------+--------+--------+--------+--------+--------+</span>
</pre>
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</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="193" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
193
</td>
<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC193" class="line" lang="plaintext">| His | x | x | x | x | x | N50 | |</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="194" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
194
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<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC194" class="line" lang="plaintext">| togram | | | | | | | |</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="195" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
195
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<pre style="margin: 0;">+<span id="LC195" class="line" lang="plaintext">| of | | | | | | | |</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="196" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
196
</td>
<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC196" class="line" lang="plaintext">| (log | | | | | | | |</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="197" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
197
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<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC197" class="line" lang="plaintext">| transf | | | | | | | |</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="198" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
198
</td>
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<pre style="margin: 0;">+<span id="LC198" class="line" lang="plaintext">| ormed) | | | | | | | |</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="199" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
199
</td>
<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC199" class="line" lang="plaintext">| read | | | | | | | |</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="200" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
200
</td>
<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC200" class="line" lang="plaintext">| length | | | | | | | |</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="201" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
201
</td>
<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC201" class="line" lang="plaintext">+--------+--------+--------+--------+--------+--------+--------+--------+</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="202" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
202
</td>
<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC202" class="line" lang="plaintext">| Biv | x | x | | x | x | log | dot, |</span>
</pre>
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</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="203" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
203
</td>
<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC203" class="line" lang="plaintext">| ariate | | | | | | tr | hex, |</span>
</pre>
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</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="204" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
204
</td>
<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC204" class="line" lang="plaintext">| plot | | | | | | ansfor | kde, |</span>
</pre>
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</tr>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="205" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
205
</td>
<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC205" class="line" lang="plaintext">| of | | | | | | mation | pauvre |</span>
</pre>
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</tr>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="206" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
206
</td>
<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC206" class="line" lang="plaintext">| length | | | | | | | |</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="207" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
207
</td>
<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC207" class="line" lang="plaintext">| a | | | | | | | |</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="208" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
208
</td>
<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC208" class="line" lang="plaintext">| gainst | | | | | | | |</span>
</pre>
</td>
</tr>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="209" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
209
</td>
<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC209" class="line" lang="plaintext">| base | | | | | | | |</span>
</pre>
</td>
</tr>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="210" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
210
</td>
<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC210" class="line" lang="plaintext">| call | | | | | | | |</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="211" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
211
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<pre style="margin: 0;">+<span id="LC211" class="line" lang="plaintext">| q | | | | | | | |</span>
</pre>
</td>
</tr>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="212" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
212
</td>
<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC212" class="line" lang="plaintext">| uality | | | | | | | |</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="213" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
213
</td>
<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC213" class="line" lang="plaintext">+--------+--------+--------+--------+--------+--------+--------+--------+</span>
</pre>
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</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="214" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
214
</td>
<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC214" class="line" lang="plaintext">| H | | x | | | x | | |</span>
</pre>
</td>
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<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="215" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
215
</td>
<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC215" class="line" lang="plaintext">| eatmap | | | | | | | |</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="216" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
216
</td>
<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC216" class="line" lang="plaintext">| of | | | | | | | |</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="217" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
217
</td>
<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC217" class="line" lang="plaintext">| reads | | | | | | | |</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="218" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
218
</td>
<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC218" class="line" lang="plaintext">| per | | | | | | | |</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="219" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
219
</td>
<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC219" class="line" lang="plaintext">| c | | | | | | | |</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="220" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
220
</td>
<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC220" class="line" lang="plaintext">| hannel | | | | | | | |</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="221" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
221
</td>
<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC221" class="line" lang="plaintext">+--------+--------+--------+--------+--------+--------+--------+--------+</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="222" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
222
</td>
<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC222" class="line" lang="plaintext">| Cumu | | x | x | | x | | |</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="223" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
223
</td>
<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC223" class="line" lang="plaintext">| lative | | | | | | | |</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="224" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
224
</td>
<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC224" class="line" lang="plaintext">| yield | | | | | | | |</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="225" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
225
</td>
<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC225" class="line" lang="plaintext">| plot | | | | | | | |</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="226" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
226
</td>
<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC226" class="line" lang="plaintext">+--------+--------+--------+--------+--------+--------+--------+--------+</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="227" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
227
</td>
<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC227" class="line" lang="plaintext">| Violin | | x | x | | x | | |</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="228" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
228
</td>
<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC228" class="line" lang="plaintext">| plot | | | | | | | |</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="229" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
229
</td>
<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC229" class="line" lang="plaintext">| of | | | | | | | |</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="230" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
230
</td>
<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC230" class="line" lang="plaintext">| read | | | | | | | |</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="231" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
231
</td>
<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC231" class="line" lang="plaintext">| length | | | | | | | |</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="232" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
232
</td>
<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC232" class="line" lang="plaintext">| over | | | | | | | |</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="233" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
233
</td>
<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC233" class="line" lang="plaintext">| time | | | | | | | |</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="234" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
234
</td>
<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC234" class="line" lang="plaintext">+--------+--------+--------+--------+--------+--------+--------+--------+</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="235" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
235
</td>
<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC235" class="line" lang="plaintext">| Violin | | x | | | x | | |</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="236" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
236
</td>
<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC236" class="line" lang="plaintext">| plot | | | | | | | |</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="237" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
237
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<pre style="margin: 0;">+<span id="LC237" class="line" lang="plaintext">| of | | | | | | | |</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="238" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
238
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<pre style="margin: 0;">+<span id="LC238" class="line" lang="plaintext">| base | | | | | | | |</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="239" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
239
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<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC239" class="line" lang="plaintext">| call | | | | | | | |</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="240" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
240
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<pre style="margin: 0;">+<span id="LC240" class="line" lang="plaintext">| q | | | | | | | |</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="241" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
241
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<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC241" class="line" lang="plaintext">| uality | | | | | | | |</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="242" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
242
</td>
<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC242" class="line" lang="plaintext">| over | | | | | | | |</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="243" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
243
</td>
<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC243" class="line" lang="plaintext">| time | | | | | | | |</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="244" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
244
</td>
<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC244" class="line" lang="plaintext">+--------+--------+--------+--------+--------+--------+--------+--------+</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="245" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
245
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<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC245" class="line" lang="plaintext">| Biv | | | | x | | | dot, |</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="246" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
246
</td>
<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC246" class="line" lang="plaintext">| ariate | | | | | | | hex, |</span>
</pre>
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</tr>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="247" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
247
</td>
<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC247" class="line" lang="plaintext">| plot | | | | | | | kde |</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="248" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
248
</td>
<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC248" class="line" lang="plaintext">| of | | | | | | | |</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="249" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
249
</td>
<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC249" class="line" lang="plaintext">| a | | | | | | | |</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="250" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
250
</td>
<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC250" class="line" lang="plaintext">| ligned | | | | | | | |</span>
</pre>
</td>
</tr>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="251" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
251
</td>
<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC251" class="line" lang="plaintext">| read | | | | | | | |</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="252" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
252
</td>
<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC252" class="line" lang="plaintext">| length | | | | | | | |</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="253" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
253
</td>
<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC253" class="line" lang="plaintext">| a | | | | | | | |</span>
</pre>
</td>
</tr>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="254" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
254
</td>
<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC254" class="line" lang="plaintext">| gainst | | | | | | | |</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="255" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
255
</td>
<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC255" class="line" lang="plaintext">| seq | | | | | | | |</span>
</pre>
</td>
</tr>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="256" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
256
</td>
<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC256" class="line" lang="plaintext">| uenced | | | | | | | |</span>
</pre>
</td>
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<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="257" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
257
</td>
<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC257" class="line" lang="plaintext">| read | | | | | | | |</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="258" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
258
</td>
<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC258" class="line" lang="plaintext">| length | | | | | | | |</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="259" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
259
</td>
<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC259" class="line" lang="plaintext">+--------+--------+--------+--------+--------+--------+--------+--------+</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="260" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
260
</td>
<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC260" class="line" lang="plaintext">| Biv | | | | x | | log | dot, |</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="261" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
261
</td>
<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC261" class="line" lang="plaintext">| ariate | | | | | | tr | hex, |</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="262" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
262
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<pre style="margin: 0;">+<span id="LC262" class="line" lang="plaintext">| plot | | | | | | ansfor | kde |</span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="263" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
263
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<pre style="margin: 0;">+<span id="LC263" class="line" lang="plaintext">| of | | | | | | mation | |</span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="264" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
264
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<pre style="margin: 0;">+<span id="LC264" class="line" lang="plaintext">| p | | | | | | | |</span>
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<td class="diff-line-num new new_line" data-linenumber="265" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
265
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<pre style="margin: 0;">+<span id="LC265" class="line" lang="plaintext">| ercent | | | | | | | |</span>
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266
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<pre style="margin: 0;">+<span id="LC266" class="line" lang="plaintext">| ref | | | | | | | |</span>
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<td class="diff-line-num new new_line" data-linenumber="267" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
267
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<pre style="margin: 0;">+<span id="LC267" class="line" lang="plaintext">| erence | | | | | | | |</span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="268" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
268
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<pre style="margin: 0;">+<span id="LC268" class="line" lang="plaintext">| id | | | | | | | |</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="269" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
269
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<pre style="margin: 0;">+<span id="LC269" class="line" lang="plaintext">| entity | | | | | | | |</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="270" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
270
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<pre style="margin: 0;">+<span id="LC270" class="line" lang="plaintext">| a | | | | | | | |</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="271" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
271
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<pre style="margin: 0;">+<span id="LC271" class="line" lang="plaintext">| gainst | | | | | | | |</span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="272" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
272
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<pre style="margin: 0;">+<span id="LC272" class="line" lang="plaintext">| read | | | | | | | |</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="273" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
273
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<pre style="margin: 0;">+<span id="LC273" class="line" lang="plaintext">| length | | | | | | | |</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="274" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
274
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<pre style="margin: 0;">+<span id="LC274" class="line" lang="plaintext">+--------+--------+--------+--------+--------+--------+--------+--------+</span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="275" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
275
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<pre style="margin: 0;">+<span id="LC275" class="line" lang="plaintext">| Biv | | | | x | | | dot, |</span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="276" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
276
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<pre style="margin: 0;">+<span id="LC276" class="line" lang="plaintext">| ariate | | | | | | | hex, |</span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="277" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
277
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<pre style="margin: 0;">+<span id="LC277" class="line" lang="plaintext">| plot | | | | | | | kde |</span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="278" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
278
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<pre style="margin: 0;">+<span id="LC278" class="line" lang="plaintext">| of | | | | | | | |</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="279" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
279
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<pre style="margin: 0;">+<span id="LC279" class="line" lang="plaintext">| p | | | | | | | |</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="280" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
280
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<pre style="margin: 0;">+<span id="LC280" class="line" lang="plaintext">| ercent | | | | | | | |</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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281
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<pre style="margin: 0;">+<span id="LC281" class="line" lang="plaintext">| ref | | | | | | | |</span>
</pre>
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282
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<pre style="margin: 0;">+<span id="LC282" class="line" lang="plaintext">| erence | | | | | | | |</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="283" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
283
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<pre style="margin: 0;">+<span id="LC283" class="line" lang="plaintext">| id | | | | | | | |</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="284" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
284
</td>
<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC284" class="line" lang="plaintext">| entity | | | | | | | |</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="285" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
285
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<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC285" class="line" lang="plaintext">| a | | | | | | | |</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="286" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
286
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<pre style="margin: 0;">+<span id="LC286" class="line" lang="plaintext">| gainst | | | | | | | |</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="287" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
287
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<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC287" class="line" lang="plaintext">| base | | | | | | | |</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="288" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
288
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<pre style="margin: 0;">+<span id="LC288" class="line" lang="plaintext">| call | | | | | | | |</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="289" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
289
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<pre style="margin: 0;">+<span id="LC289" class="line" lang="plaintext">| q | | | | | | | |</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="290" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
290
</td>
<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC290" class="line" lang="plaintext">| uality | | | | | | | |</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="291" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
291
</td>
<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC291" class="line" lang="plaintext">+--------+--------+--------+--------+--------+--------+--------+--------+</span>
</pre>
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</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="292" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
292
</td>
<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC292" class="line" lang="plaintext">| Biv | | | | x | | log | dot, |</span>
</pre>
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</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="293" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
293
</td>
<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC293" class="line" lang="plaintext">| ariate | | | | | | tr | hex, |</span>
</pre>
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<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="294" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
294
</td>
<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC294" class="line" lang="plaintext">| plot | | | | | | ansfor | kde |</span>
</pre>
</td>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="295" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
295
</td>
<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC295" class="line" lang="plaintext">| of | | | | | | mation | |</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="296" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
296
</td>
<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC296" class="line" lang="plaintext">| m | | | | | | | |</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="297" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
297
</td>
<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC297" class="line" lang="plaintext">| apping | | | | | | | |</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="298" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
298
</td>
<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC298" class="line" lang="plaintext">| q | | | | | | | |</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="299" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
299
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<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC299" class="line" lang="plaintext">| uality | | | | | | | |</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="300" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
300
</td>
<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC300" class="line" lang="plaintext">| a | | | | | | | |</span>
</pre>
</td>
</tr>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="301" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
301
</td>
<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC301" class="line" lang="plaintext">| gainst | | | | | | | |</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="302" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
302
</td>
<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC302" class="line" lang="plaintext">| read | | | | | | | |</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="303" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
303
</td>
<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC303" class="line" lang="plaintext">| length | | | | | | | |</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="304" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
304
</td>
<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC304" class="line" lang="plaintext">+--------+--------+--------+--------+--------+--------+--------+--------+</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="305" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
305
</td>
<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC305" class="line" lang="plaintext">| Biv | | | | x | | | dot, |</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="306" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
306
</td>
<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC306" class="line" lang="plaintext">| ariate | | | | | | | hex, |</span>
</pre>
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</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="307" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
307
</td>
<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC307" class="line" lang="plaintext">| plot | | | | | | | kde |</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="308" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
308
</td>
<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC308" class="line" lang="plaintext">| of | | | | | | | |</span>
</pre>
</td>
</tr>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="309" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
309
</td>
<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC309" class="line" lang="plaintext">| m | | | | | | | |</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="310" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
310
</td>
<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC310" class="line" lang="plaintext">| apping | | | | | | | |</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="311" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
311
</td>
<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC311" class="line" lang="plaintext">| q | | | | | | | |</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="312" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
312
</td>
<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC312" class="line" lang="plaintext">| uality | | | | | | | |</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="313" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
313
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<pre style="margin: 0;">+<span id="LC313" class="line" lang="plaintext">| a | | | | | | | |</span>
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314
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<pre style="margin: 0;">+<span id="LC314" class="line" lang="plaintext">| gainst | | | | | | | |</span>
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315
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<pre style="margin: 0;">+<span id="LC315" class="line" lang="plaintext">| ba | | | | | | | |</span>
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316
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<pre style="margin: 0;">+<span id="LC316" class="line" lang="plaintext">| secall | | | | | | | |</span>
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317
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<pre style="margin: 0;">+<span id="LC317" class="line" lang="plaintext">| q | | | | | | | |</span>
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318
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<pre style="margin: 0;">+<span id="LC318" class="line" lang="plaintext">| uality | | | | | | | |</span>
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319
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<pre style="margin: 0;">+<span id="LC319" class="line" lang="plaintext">+--------+--------+--------+--------+--------+--------+--------+--------+</span>
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320
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<pre style="margin: 0;">+<span id="LC320" class="line" lang="plaintext"></span>
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321
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<pre style="margin: 0;">+<span id="LC321" class="line" lang="plaintext">COMPANION SCRIPTS</span>
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322
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<pre style="margin: 0;">+<span id="LC322" class="line" lang="plaintext">-----------------</span>
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323
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<pre style="margin: 0;">+<span id="LC323" class="line" lang="plaintext"></span>
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324
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<pre style="margin: 0;">+<span id="LC324" class="line" lang="plaintext">- `NanoComp <https://github.com/wdecoster/nanocomp>`__: comparing</span>
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325
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<pre style="margin: 0;">+<span id="LC325" class="line" lang="plaintext"> multiple runs</span>
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326
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<pre style="margin: 0;">+<span id="LC326" class="line" lang="plaintext">- `NanoStat <https://github.com/wdecoster/nanostat>`__: statistic</span>
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327
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<pre style="margin: 0;">+<span id="LC327" class="line" lang="plaintext"> summary report of reads or alignments</span>
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328
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<pre style="margin: 0;">+<span id="LC328" class="line" lang="plaintext">- `NanoFilt <https://github.com/wdecoster/nanofilt>`__: filtering and</span>
</pre>
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329
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<pre style="margin: 0;">+<span id="LC329" class="line" lang="plaintext"> trimming of reads</span>
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330
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<pre style="margin: 0;">+<span id="LC330" class="line" lang="plaintext">- `NanoLyse <https://github.com/wdecoster/nanolyse>`__: removing</span>
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331
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<pre style="margin: 0;">+<span id="LC331" class="line" lang="plaintext"> contaminant reads (e.g. lambda control DNA) from fastq</span>
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332
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<pre style="margin: 0;">+<span id="LC332" class="line" lang="plaintext"></span>
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333
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<pre style="margin: 0;">+<span id="LC333" class="line" lang="plaintext">CITATION</span>
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334
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<pre style="margin: 0;">+<span id="LC334" class="line" lang="plaintext">--------</span>
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335
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<pre style="margin: 0;">+<span id="LC335" class="line" lang="plaintext"></span>
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336
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<pre style="margin: 0;">+<span id="LC336" class="line" lang="plaintext">If you use this tool, please consider citing our</span>
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337
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<pre style="margin: 0;">+<span id="LC337" class="line" lang="plaintext">`publication <https://academic.oup.com/bioinformatics/advance-article/doi/10.1093/bioinformatics/bty149/4934939>`__.</span>
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338
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<pre style="margin: 0;">+<span id="LC338" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC339" class="line" lang="plaintext">Copyright: 2016-2020 Wouter De Coster decosterwouter@gmail.com</span>
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<pre style="margin: 0;">+<span id="LC341" class="line" lang="plaintext">.. |Twitter URL| image:: https://img.shields.io/twitter/url/https/twitter.com/wouter_decoster.svg?style=social&label=Follow%20%40wouter_decoster</span>
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<pre style="margin: 0;">+<span id="LC342" class="line" lang="plaintext"> :target: https://twitter.com/wouter_decoster</span>
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<pre style="margin: 0;">+<span id="LC343" class="line" lang="plaintext">.. |conda badge| image:: https://anaconda.org/bioconda/nanoplot/badges/installer/conda.svg</span>
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<pre style="margin: 0;">+<span id="LC344" class="line" lang="plaintext"> :target: https://anaconda.org/bioconda/nanoplot</span>
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<pre style="margin: 0;">+<span id="LC345" class="line" lang="plaintext">.. |Build Status| image:: https://travis-ci.org/wdecoster/NanoPlot.svg?branch=master</span>
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<pre style="margin: 0;">+<span id="LC346" class="line" lang="plaintext"> :target: https://travis-ci.org/wdecoster/NanoPlot</span></pre>
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<li id="2c9946377578b6a8fe8f38b82cb11e5d60481930">
<a href="https://salsa.debian.org/med-team/nanoplot/-/compare/35ac3dd7570ee601d826d8097ce4bb42a18d499b...57b98e9246eae2217e5a08735febdf7a8702b228#2c9946377578b6a8fe8f38b82cb11e5d60481930"><strong>nanoplot/NanoPlot.py</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -59,7 +59,8 @@ def main():</td>
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<pre style="margin: 0;"> <span id="LC59" class="line" lang="python"> <span class="n" style="color: #333;">readtype</span><span class="o" style="font-weight: 600;">=</span><span class="n" style="color: #333;">args</span><span class="p">.</span><span class="n" style="color: #333;">readtype</span><span class="p">,</span></span>
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<pre style="margin: 0;"> <span id="LC60" class="line" lang="python"> <span class="n" style="color: #333;">combine</span><span class="o" style="font-weight: 600;">=</span><span class="s" style="color: #d14;">"simple"</span><span class="p">,</span></span>
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<pre style="margin: 0;"> <span id="LC61" class="line" lang="python"> <span class="n" style="color: #333;">barcoded</span><span class="o" style="font-weight: 600;">=</span><span class="n" style="color: #333;">args</span><span class="p">.</span><span class="n" style="color: #333;">barcoded</span><span class="p">,</span></span>
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<pre style="margin: 0;">-<span id="LC62" class="line" lang="python"> <span class="n" style="color: #333;">huge</span><span class="o" style="font-weight: 600;">=</span><span class="n" style="color: #333;">args</span><span class="p">.</span><span class="n" style="color: #333;">huge</span><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC62" class="line" lang="python"> <span class="n" style="color: #333;">huge</span><span class="o" style="font-weight: 600;">=</span><span class="n" style="color: #333;">args</span><span class="p">.</span><span class="n" style="color: #333;">huge</span><span class="p">,</span></span>
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<pre style="margin: 0;">+<span id="LC63" class="line" lang="python"> <span class="n" style="color: #333;">keep_supp</span><span class="o" style="font-weight: 600;">=</span><span class="ow" style="font-weight: 600;">not</span><span class="p">(</span><span class="n" style="color: #333;">args</span><span class="p">.</span><span class="n" style="color: #333;">no_supplementary</span><span class="p">))</span></span>
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<pre style="margin: 0;"> <span id="LC64" class="line" lang="python"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">args</span><span class="p">.</span><span class="n" style="color: #333;">store</span><span class="p">:</span></span>
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<pre style="margin: 0;"> <span id="LC65" class="line" lang="python"> <span class="n" style="color: #333;">pickle</span><span class="p">.</span><span class="n" style="color: #333;">dump</span><span class="p">(</span></span>
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<pre style="margin: 0;"> <span id="LC66" class="line" lang="python"> <span class="n" style="color: #333;">obj</span><span class="o" style="font-weight: 600;">=</span><span class="n" style="color: #333;">datadf</span><span class="p">,</span></span>
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<a href="https://salsa.debian.org/med-team/nanoplot/-/compare/35ac3dd7570ee601d826d8097ce4bb42a18d499b...57b98e9246eae2217e5a08735febdf7a8702b228#eb7b181afb0820ee0fe4e200d2b9801a9bd4ebc6"><strong>nanoplot/utils.py</strong></a>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="139" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="139" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -139,6 +139,10 @@ def get_args():</td>
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<pre style="margin: 0;"> <span id="LC139" class="line" lang="python"> <span class="n" style="color: #333;">filtering</span><span class="p">.</span><span class="n" style="color: #333;">add_argument</span><span class="p">(</span><span class="s" style="color: #d14;">"--barcoded"</span><span class="p">,</span></span>
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<pre style="margin: 0;"> <span id="LC140" class="line" lang="python"> <span class="n" style="color: #333;">help</span><span class="o" style="font-weight: 600;">=</span><span class="s" style="color: #d14;">"Use if you want to split the summary file by barcode"</span><span class="p">,</span></span>
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<pre style="margin: 0;"> <span id="LC141" class="line" lang="python"> <span class="n" style="color: #333;">action</span><span class="o" style="font-weight: 600;">=</span><span class="s" style="color: #d14;">"store_true"</span><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC142" class="line" lang="python"> <span class="n" style="color: #333;">filtering</span><span class="p">.</span><span class="n" style="color: #333;">add_argument</span><span class="p">(</span><span class="s" style="color: #d14;">"--no_supplementary"</span><span class="p">,</span></span>
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<pre style="margin: 0;">+<span id="LC143" class="line" lang="python"> <span class="n" style="color: #333;">help</span><span class="o" style="font-weight: 600;">=</span><span class="s" style="color: #d14;">"Use if you want to remove supplementary alignments"</span><span class="p">,</span></span>
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144
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<pre style="margin: 0;">+<span id="LC144" class="line" lang="python"> <span class="n" style="color: #333;">action</span><span class="o" style="font-weight: 600;">=</span><span class="s" style="color: #d14;">"store_true"</span><span class="p">,</span></span>
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145
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<pre style="margin: 0;">+<span id="LC145" class="line" lang="python"> <span class="n" style="color: #333;">default</span><span class="o" style="font-weight: 600;">=</span><span class="bp" style="color: #999;">False</span><span class="p">)</span></span>
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142
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146
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<pre style="margin: 0;"> <span id="LC146" class="line" lang="python"> <span class="n" style="color: #333;">visual</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">parser</span><span class="p">.</span><span class="n" style="color: #333;">add_argument_group</span><span class="p">(</span></span>
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143
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147
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<pre style="margin: 0;"> <span id="LC147" class="line" lang="python"> <span class="n" style="color: #333;">title</span><span class="o" style="font-weight: 600;">=</span><span class="s" style="color: #d14;">'Options for customizing the plots created'</span><span class="p">)</span></span>
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144
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148
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<pre style="margin: 0;"> <span id="LC148" class="line" lang="python"> <span class="n" style="color: #333;">visual</span><span class="p">.</span><span class="n" style="color: #333;">add_argument</span><span class="p">(</span><span class="s" style="color: #d14;">"-c"</span><span class="p">,</span> <span class="s" style="color: #d14;">"--color"</span><span class="p">,</span></span>
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<a href="https://salsa.debian.org/med-team/nanoplot/-/compare/35ac3dd7570ee601d826d8097ce4bb42a18d499b...57b98e9246eae2217e5a08735febdf7a8702b228#f7afc41a2b57eaf26e6f05f09c573d5ca8a67794"><strong>nanoplot/version.py</strong></a>
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="python"><span class="n" style="color: #333;">__version__</span> <span class="o" style="font-weight: 600;">=</span> <span class="s" style="color: #d14;">"1.<span class="idiff left right">29.0</span>"</span></span></pre>
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1
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="python"><span class="n" style="color: #333;">__version__</span> <span class="o" style="font-weight: 600;">=</span> <span class="s" style="color: #d14;">"1.<span class="idiff left right">30.1</span>"</span></span></pre>
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<a href="https://salsa.debian.org/med-team/nanoplot/-/compare/35ac3dd7570ee601d826d8097ce4bb42a18d499b...57b98e9246eae2217e5a08735febdf7a8702b228#c50263638f3890c64d93ff52ebd1ab67bd90ed5b"><strong>scripts/test.sh</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -12,6 +12,11 @@ NanoPlot --bam nanotest/alignment.bam --verbose</td>
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<pre style="margin: 0;"> <span id="LC12" class="line" lang="shell"><span class="nb" style="color: #0086b3;">echo</span> <span class="s2" style="color: #d14;">""</span></span>
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13
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<pre style="margin: 0;"> <span id="LC13" class="line" lang="shell"><span class="nb" style="color: #0086b3;">echo</span> <span class="s2" style="color: #d14;">""</span></span>
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14
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<pre style="margin: 0;"> <span id="LC14" class="line" lang="shell"><span class="nb" style="color: #0086b3;">echo</span> <span class="s2" style="color: #d14;">""</span></span>
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="shell"><span class="nb" style="color: #0086b3;">echo</span> <span class="s2" style="color: #d14;">"testing bam without supplementary alignments:"</span></span>
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="shell">NanoPlot <span class="nt" style="color: #000080;">--bam</span> nanotest/alignment.bam <span class="nt" style="color: #000080;">--verbose</span> <span class="nt" style="color: #000080;">--no_supplementary</span></span>
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17
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="shell"><span class="nb" style="color: #0086b3;">echo</span> <span class="s2" style="color: #d14;">""</span></span>
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18
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<pre style="margin: 0;">+<span id="LC18" class="line" lang="shell"><span class="nb" style="color: #0086b3;">echo</span> <span class="s2" style="color: #d14;">""</span></span>
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19
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="shell"><span class="nb" style="color: #0086b3;">echo</span> <span class="s2" style="color: #d14;">""</span></span>
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15
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<pre style="margin: 0;"> <span id="LC20" class="line" lang="shell"><span class="nb" style="color: #0086b3;">echo</span> <span class="s2" style="color: #d14;">"testing summary:"</span></span>
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16
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<pre style="margin: 0;"> <span id="LC21" class="line" lang="shell">NanoPlot <span class="nt" style="color: #000080;">--summary</span> nanotest/sequencing_summary.txt <span class="nt" style="color: #000080;">--loglength</span> <span class="nt" style="color: #000080;">--verbose</span></span>
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17
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22
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<pre style="margin: 0;"> <span id="LC22" class="line" lang="shell"><span class="nb" style="color: #0086b3;">echo</span> <span class="s2" style="color: #d14;">""</span></span>
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<a href="https://salsa.debian.org/med-team/nanoplot/-/compare/35ac3dd7570ee601d826d8097ce4bb42a18d499b...57b98e9246eae2217e5a08735febdf7a8702b228#8e2edce0d507e1297474f25c00cae94258db38d8"><strong>setup.py</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -16,7 +16,7 @@ setup(</td>
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<pre style="margin: 0;"> <span id="LC16" class="line" lang="python"> <span class="n" style="color: #333;">url</span><span class="o" style="font-weight: 600;">=</span><span class="s" style="color: #d14;">'https://github.com/wdecoster/NanoPlot'</span><span class="p">,</span></span>
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<pre style="margin: 0;"> <span id="LC17" class="line" lang="python"> <span class="n" style="color: #333;">author</span><span class="o" style="font-weight: 600;">=</span><span class="s" style="color: #d14;">'Wouter De Coster'</span><span class="p">,</span></span>
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<pre style="margin: 0;"> <span id="LC18" class="line" lang="python"> <span class="n" style="color: #333;">author_email</span><span class="o" style="font-weight: 600;">=</span><span class="s" style="color: #d14;">'decosterwouter@gmail.com'</span><span class="p">,</span></span>
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<pre style="margin: 0;">-<span id="LC19" class="line" lang="python"> <span class="n" style="color: #333;">license</span><span class="o" style="font-weight: 600;">=</span><span class="s" style="color: #d14;">'<span class="idiff left right">MIT</span>'</span><span class="p">,</span></span>
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="python"> <span class="n" style="color: #333;">license</span><span class="o" style="font-weight: 600;">=</span><span class="s" style="color: #d14;">'<span class="idiff left right">GPLv3</span>'</span><span class="p">,</span></span>
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<pre style="margin: 0;"> <span id="LC20" class="line" lang="python"> <span class="n" style="color: #333;">classifiers</span><span class="o" style="font-weight: 600;">=</span><span class="p">[</span></span>
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<pre style="margin: 0;"> <span id="LC21" class="line" lang="python"> <span class="s" style="color: #d14;">'Development Status :: 4 - Beta'</span><span class="p">,</span></span>
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<pre style="margin: 0;"> <span id="LC22" class="line" lang="python"> <span class="s" style="color: #d14;">'Intended Audience :: Science/Research'</span><span class="p">,</span></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -36,12 +36,11 @@ setup(</td>
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<pre style="margin: 0;"> <span id="LC36" class="line" lang="python"> <span class="s" style="color: #d14;">'numpy'</span><span class="p">,</span></span>
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<pre style="margin: 0;"> <span id="LC37" class="line" lang="python"> <span class="s" style="color: #d14;">'scipy'</span><span class="p">,</span></span>
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<pre style="margin: 0;"> <span id="LC38" class="line" lang="python"> <span class="s" style="color: #d14;">'python-dateutil'</span><span class="p">,</span></span>
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<pre style="margin: 0;">-<span id="LC39" class="line" lang="python"> <span class="s" style="color: #d14;">'seaborn>=0.<span class="idiff left right">9.0</span>'</span><span class="p">,</span></span>
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<pre style="margin: 0;">+<span id="LC39" class="line" lang="python"> <span class="s" style="color: #d14;">'seaborn>=0.<span class="idiff left right">10.1</span>'</span><span class="p">,</span></span>
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<pre style="margin: 0;"> <span id="LC40" class="line" lang="python"> <span class="s" style="color: #d14;">'matplotlib>=3.1.3'</span><span class="p">,</span></span>
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<pre style="margin: 0;">-<span id="LC41" class="line" lang="python"> <span class="s" style="color: #d14;">'nanoget>=1.<span class="idiff left right">9</span>.0'</span><span class="p">,</span></span>
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<pre style="margin: 0;">+<span id="LC41" class="line" lang="python"> <span class="s" style="color: #d14;">'nanoget>=1.<span class="idiff left right">13</span>.0'</span><span class="p">,</span></span>
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<pre style="margin: 0;"> <span id="LC42" class="line" lang="python"> <span class="s" style="color: #d14;">'nanomath>=0.23.1'</span><span class="p">,</span></span>
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<pre style="margin: 0;">-<span id="LC43" class="line" lang="python"> <span class="s" style="color: #d14;">"pauvre==0.1.86"</span><span class="p">,</span></span>
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<pre style="margin: 0;">-<span id="LC44" class="line" lang="python"> <span class="s" style="color: #d14;">"statsmodels==0.10.1"</span><span class="p">,</span></span>
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<pre style="margin: 0;">+<span id="LC43" class="line" lang="python"> <span class="s" style="color: #d14;">"pauvre==0.2.0"</span><span class="p">,</span></span>
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<pre style="margin: 0;"> <span id="LC44" class="line" lang="python"> <span class="s" style="color: #d14;">'plotly>=4.1.0'</span><span class="p">,</span></span>
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<pre style="margin: 0;"> <span id="LC45" class="line" lang="python"> <span class="p">],</span></span>
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<pre style="margin: 0;"> <span id="LC46" class="line" lang="python"> <span class="n" style="color: #333;">package_data</span><span class="o" style="font-weight: 600;">=</span><span class="p">{</span><span class="s" style="color: #d14;">'NanoPlot'</span><span class="p">:</span> <span class="p">[]},</span></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -52,4 +51,5 @@ setup(</td>
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<pre style="margin: 0;"> <span id="LC51" class="line" lang="python"> <span class="s" style="color: #d14;">'NanoPlot=nanoplot.NanoPlot:main'</span><span class="p">,</span></span>
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<pre style="margin: 0;"> <span id="LC52" class="line" lang="python"> <span class="p">],</span></span>
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<pre style="margin: 0;"> <span id="LC53" class="line" lang="python"> <span class="p">},</span></span>
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<pre style="margin: 0;">+<span id="LC54" class="line" lang="python"> <span class="n" style="color: #333;">data_files</span><span class="o" style="font-weight: 600;">=</span><span class="p">[(</span><span class="s" style="color: #d14;">""</span><span class="p">,</span> <span class="p">[</span><span class="s" style="color: #d14;">"LICENSE"</span><span class="p">])]</span></span>
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<pre style="margin: 0;"> <span id="LC55" class="line" lang="python"><span class="p">)</span></span></pre>
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