<!DOCTYPE html PUBLIC "-//W3C//DTD HTML 4.0 Transitional//EN" "http://www.w3.org/TR/REC-html40/loose.dtd">
<html lang="en">
<head>
<meta content="text/html; charset=US-ASCII" http-equiv="Content-Type">
<title>
GitLab
</title>



<style>img {
max-width: 100%; height: auto;
}
</style>
</head>
<body>
<div class="content">

<h3>
Balint Reczey pushed to branch master
at <a href="https://salsa.debian.org/med-team/python-cogent">Debian Med / python-cogent</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/python-cogent/-/commit/f1fb891f63c539562d6695634f495aaaf24b73ca">f1fb891f</a></strong>
<div>
<span>by Balint Reczey</span>
<i>at 2020-07-03T12:04:49+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 2020.6.30a0+dfsg</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/python-cogent/-/commit/80ba0bae80e037a0dc26c7ebe9acb40a64571fae">80ba0bae</a></strong>
<div>
<span>by Balint Reczey</span>
<i>at 2020-07-03T12:04:55+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Update upstream source from tag 'upstream/2020.6.30a0+dfsg'

Update to upstream version '2020.6.30a0+dfsg'
with Debian dir 8d7ddeca261ebb7d61fd8496a16bc70557869ef4</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/python-cogent/-/commit/aebf1d39dd039bb06cf5c9895c1a9ddfa6bb2757">aebf1d39</a></strong>
<div>
<span>by Balint Reczey</span>
<i>at 2020-07-06T10:38:29+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Update changelog
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/python-cogent/-/commit/4987fd0a8c12fe8bd8f3c0aac947c7eaa84b3d48">4987fd0a</a></strong>
<div>
<span>by Balint Reczey</span>
<i>at 2020-07-06T10:38:33+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Drop patches applied in new upstream release
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/python-cogent/-/commit/46efc9536ba0948d8e06545127e45a99b62b5e9c">46efc953</a></strong>
<div>
<span>by Balint Reczey</span>
<i>at 2020-07-06T10:38:33+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Refresh patches
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/python-cogent/-/commit/02f2f37bf16d0d8e31945a6e14855e36df103b3b">02f2f37b</a></strong>
<div>
<span>by Balint Reczey</span>
<i>at 2020-07-06T10:38:33+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Add new build dependencies:

- python3-sphinx-bootstrap-theme
- python3-sphinx-gallery
- python3-jupyter-sphinx
- python3-numba
</pre>
</li>
</ul>
<h4>29 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#091aff741808a09242f252264b14f4a9adaa5305">
<span class="new-file">
+
.github/dependabot.yml
</span>
</a>
</li>
<li class="file-stats">
<a href="#6b9c6782d59be7c3d669b9e78328b8c384296d32">
<span class="new-file">
+
.github/workflows/testing_develop.yml
</span>
</a>
</li>
<li class="file-stats">
<a href="#a5cc2925ca8258af241be7e5b0381edf30266302">
.gitignore
</a>
</li>
<li class="file-stats">
<a href="#39764dc6adbe1c6e740db8636ab21a5f44f41f59">
.hgignore
</a>
</li>
<li class="file-stats">
<a href="#0398ccd0f49298b10a3d76a47800d2ebecd49859">
LICENSE
</a>
</li>
<li class="file-stats">
<a href="#8875df48c18030126ef5ef5a6f5c93b23451fb9f">
MANIFEST.in
</a>
</li>
<li class="file-stats">
<a href="#8ec9a00bfd09b3190ac6b22251dbb1aa95a0579d">
README.md
</a>
</li>
<li class="file-stats">
<a href="#40ebc6823f24f296c0cd3fddd6ccda69b74ff2e4">
azure-pipelines.yml
</a>
</li>
<li class="file-stats">
<a href="#6367da19134353bcf9c8488dd256f6e23ed1f96e">
<span class="new-file">
+
c3dev-environment.yml
</span>
</a>
</li>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
</a>
</li>
<li class="file-stats">
<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
</a>
</li>
<li class="file-stats">
<a href="#6624b2fdbd825ce0eaa060246bdc1184625056cc">
<span class="deleted-file">

debian/patches/3bc0a8a413cb82ec6a3e86beaa0e2e71ad8ed3fb.patch
</span>
</a>
</li>
<li class="file-stats">
<a href="#0deb4568a4619b7726807e1faa3355cf56b0131a">
<span class="deleted-file">

debian/patches/96ab670d76f88a188286017602c1c47463be5037.patch
</span>
</a>
</li>
<li class="file-stats">
<a href="#613deecdce0bea1b1f43de8f67c113f2df661c9a">
<span class="deleted-file">

debian/patches/9ea740ee6a936895f68af59537fd6171803aa7e6.patch
</span>
</a>
</li>
<li class="file-stats">
<a href="#bc34014ab4b9a49dd7a27bdd8d352912607c3a96">
debian/patches/series
</a>
</li>
<li class="file-stats">
<a href="#0325e4f25102e77f8a7e2b29dd07d7e574a1b96e">
debian/patches/sphinx.patch
</a>
</li>
<li class="file-stats">
<a href="#cc95256222fd09d147178b534a640477b6725554">
doc/COGENT3_LICENSE.rst
</a>
</li>
<li class="file-stats">
<a href="#c86c7a6d9a7bc77f1c375315f47ff6952729ba5b">
doc/Makefile
</a>
</li>
<li class="file-stats">
<a href="#4e0e6e1d68ca4ca1718217231d689c5e6ad1cb2c">
<span class="new-file">
+
doc/api/sequence/classes/cogent3.core.sequence.ProteinSequence.rst
</span>
</a>
</li>
<li class="file-stats">
<a href="#97b11b16081ff4b3212213b5a3f38d96a88a5b4f">
doc/api/sequence/sequence.rst
</a>
</li>
<li class="file-stats">
<a href="#20ebd29097323b191d4559ebbbd71e142dc9f6a9">
doc/app/align-codon.rst
</a>
</li>
<li class="file-stats">
<a href="#31533a462d22a367b805a86b03fd8140ae1bbeb8">
doc/app/align-nucleotide.rst
</a>
</li>
<li class="file-stats">
<a href="#f44b149d8606cedb16e21482ca6562dc7bb3bfad">
doc/app/align-protein.rst
</a>
</li>
<li class="file-stats">
<a href="#28ce1e2af1f25b3d567ce679f3c0bc8a7e55ecce">
<span class="deleted-file">

doc/app/available-apps.ipynb
</span>
</a>
</li>
<li class="file-stats">
<a href="#ea13067b34bd42a24e5a7598637b60d3bc99f02b">
<span class="new-file">
+
doc/app/available-apps.rst
</span>
</a>
</li>
<li class="file-stats">
<a href="#0b98ea827d171f542972ff4a2a22d3df17290f8f">
<span class="deleted-file">

doc/app/dstore.ipynb
</span>
</a>
</li>
<li class="file-stats">
<a href="#6b8723e73a35afa020ee1876c4b7606c027c0a9e">
<span class="new-file">
+
doc/app/dstore.rst
</span>
</a>
</li>
<li class="file-stats">
<a href="#7e590917bfd479eb521e98819e8cd90b14cb3b4d">
<span class="deleted-file">

doc/app/evo-ancestral-states.ipynb
</span>
</a>
</li>
<li class="file-stats">
<a href="#1547afe4324a9a746bbfb97fcb76b8ce51654f94">
<span class="new-file">
+
doc/app/evo-ancestral-states.rst
</span>
</a>
</li>
</ul>
<h5>The diff was not included because it is too large.</h5>

</div>
<div class="footer" style="margin-top: 10px;">
<p style="font-size: small; color: #777;">

<br>
<a href="https://salsa.debian.org/med-team/python-cogent/-/compare/b92f93b10ea3f06f3845d2a706e3508e9441632c...02f2f37bf16d0d8e31945a6e14855e36df103b3b">View it on GitLab</a>.
<br>
You're receiving this email because of your account on salsa.debian.org.
If you'd like to receive fewer emails, you can
adjust your notification settings.



</p>
</div>
</body>
</html>