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<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/med-team/community/helper-scripts">Debian Med / community / helper-scripts</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/community/helper-scripts/-/commit/974faf103cdd4ce1ff3483e0dbc9289681b6646a">974faf10</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-07-07T13:44:03+00:00</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">automatic update
</pre>
</li>
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<h4>2 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#f6d55d24085decec06151dd27f30199089d856ca">
debian-med-tests.txt
</a>
</li>
<li class="file-stats">
<a href="#2654e31016bcee9bbe05d462121706cc8ed368af">
outdated_med-packages.txt
</a>
</li>
</ul>
<h4>Changes:</h4>
<li id="f6d55d24085decec06151dd27f30199089d856ca">
<a href="https://salsa.debian.org/med-team/community/helper-scripts/-/commit/974faf103cdd4ce1ff3483e0dbc9289681b6646a#f6d55d24085decec06151dd27f30199089d856ca"><strong>debian-med-tests.txt</strong></a>
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="plaintext">Last-Update: Tue, 07 Jul 2020 <span class="idiff left right">01:42:04</span> +0000</span>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">Last-Update: Tue, 07 Jul 2020 <span class="idiff left right">13:42:03</span> +0000</span>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext"> Source | Vote | Tasks | Tags </span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext">-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------</span>
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<pre style="margin: 0;">-<span id="LC5" class="line" lang="plaintext"> dcmtk | 18<span class="idiff left right">6</span> | {covid-19,imaging} | </span>
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<pre style="margin: 0;">-<span id="LC6" class="line" lang="plaintext"> orthanc | 9<span class="idiff left right">3</span> | {covid-19,imaging,practice} | </span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext"> dcmtk | 18<span class="idiff left right">9</span> | {covid-19,imaging} | </span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext"> orthanc | 9<span class="idiff left right">6</span> | {covid-19,imaging,practice} | </span>
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="plaintext"> gdcm | 44 | {imaging-dev} | </span>
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<pre style="margin: 0;">-<span id="LC8" class="line" lang="plaintext"> orthanc-wsi | 43 | {his,practice,covid-19,laboratory,imaging,oncology} | </span>
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<pre style="margin: 0;">-<span id="LC9" class="line" lang="plaintext"> htsjdk | 32 | {bio-dev} | </span>
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<pre style="margin: 0;">-<span id="LC10" class="line" lang="plaintext"> dcm2niix | 25 | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext"> orthanc-wsi | 44 | {his,practice,covid-19,laboratory,imaging,oncology} | </span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="plaintext"> htsjdk | 30 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="plaintext"> dicom3tools | 24 | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC12" class="line" lang="plaintext"> dicomscope | 24 | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC13" class="line" lang="plaintext"> gdcm | 18 | {covid-19,imaging} | </span>
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="plaintext"> dcm2niix | 23 | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="plaintext"> dicomscope | 23 | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="plaintext"> gnumed-server | 18 | {practice,covid-19} | </span>
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<pre style="margin: 0;"> <span id="LC14" class="line" lang="plaintext"> ngs-sdk | 18 | {bio-dev} | </span>
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<pre style="margin: 0;">-<span id="LC15" class="line" lang="plaintext"> gnumed-server | 17 | {practice,covid-19} | </span>
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<pre style="margin: 0;">-<span id="LC16" class="line" lang="plaintext"> invesalius | 15 | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC17" class="line" lang="plaintext"> gdcm | 14 | {imaging-dev} | </span>
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<pre style="margin: 0;">-<span id="LC18" class="line" lang="plaintext"> minc-tools | 13 | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="plaintext"> gdcm | 16 | {covid-19,imaging} | </span>
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="plaintext"> invesalius | 14 | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="plaintext"> gdcm | 13 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC18" class="line" lang="plaintext"> pixelmed | 13 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC19" class="line" lang="plaintext"> insighttoolkit4 | 12 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC20" class="line" lang="plaintext"> jebl2 | 12 | {bio-dev} | </span>
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<pre style="margin: 0;">-<span id="LC22" class="line" lang="plaintext"> vtk-dicom | 12 | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC23" class="line" lang="plaintext"> biosig4c++ | 10 | {physics,imaging} | </span>
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<pre style="margin: 0;">-<span id="LC24" class="line" lang="plaintext"> openslide | 10 | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC21" class="line" lang="plaintext"> minc-tools | 12 | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC22" class="line" lang="plaintext"> vtk-dicom | 11 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC23" class="line" lang="plaintext"> adun.app | 9 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC24" class="line" lang="plaintext"> biosig4c++ | 9 | {physics,imaging} | </span>
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<pre style="margin: 0;"> <span id="LC25" class="line" lang="plaintext"> libdivsufsort | 9 | {bio-dev} | </span>
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<pre style="margin: 0;">-<span id="LC27" class="line" lang="plaintext"> <span class="idiff left right">psychopy | 9 | {psychology}</span> | </span>
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<pre style="margin: 0;">+<span id="LC26" class="line" lang="plaintext"> <span class="idiff left right">openslide | 9 | {imaging} </span> | </span>
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<pre style="margin: 0;"> <span id="LC27" class="line" lang="plaintext"> dicompyler | 8 | {oncology} | </span>
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<pre style="margin: 0;"> <span id="LC28" class="line" lang="plaintext"> king | 8 | {imaging,typesetting} | </span>
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<pre style="margin: 0;"> <span id="LC29" class="line" lang="plaintext"> lagan | 8 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC30" class="line" lang="plaintext"> melting | 8 | {bio,cloud} | </span>
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<pre style="margin: 0;"> <span id="LC31" class="line" lang="plaintext"> ngs-sdk | 8 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC32" class="line" lang="plaintext"> plastimatch | 8 | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC33" class="line" lang="plaintext"> psychopy | 8 | {psychology} | </span>
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<pre style="margin: 0;"> <span id="LC34" class="line" lang="plaintext"> libminc | 7 | {imaging-dev} | </span>
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<pre style="margin: 0;">-<span id="LC35" class="line" lang="plaintext"> librg-utils-perl | 7 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC35" class="line" lang="plaintext"> orthanc-webviewer | 7 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC36" class="line" lang="plaintext"> stacks | 7 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC37" class="line" lang="plaintext"> treeview | 7 | {bio-phylogeny,bio} | </span>
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<pre style="margin: 0;"> <span id="LC38" class="line" lang="plaintext"> ea-utils | 6 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC39" class="line" lang="plaintext"> king-probe | 6 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC40" class="line" lang="plaintext"> librg-utils-perl | 6 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC41" class="line" lang="plaintext"> orthanc-dicomweb | 6 | {imaging,covid-19} | </span>
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<pre style="margin: 0;"> <span id="LC42" class="line" lang="plaintext"> paraclu | 6 | {cloud,bio} | </span>
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<pre style="margin: 0;"> <span id="LC43" class="line" lang="plaintext"> anfo | 5 | {bio,cloud} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -76,7 +76,6 @@ Last-Update: Tue, 07 Jul 2020 01:42:04 +0000</td>
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<pre style="margin: 0;"> <span id="LC76" class="line" lang="plaintext"> bandage | 3 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC77" class="line" lang="plaintext"> brig | 3 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC78" class="line" lang="plaintext"> busco | 3 | {covid-19,bio} | </span>
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<pre style="margin: 0;">-<span id="LC79" class="line" lang="plaintext"> delly | 3 | {bio,covid-19} | </span>
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<pre style="margin: 0;"> <span id="LC79" class="line" lang="plaintext"> ecopcr | 3 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC80" class="line" lang="plaintext"> edtsurf | 3 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC81" class="line" lang="plaintext"> embassy-domainatrix | 3 | {cloud,bio} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -86,10 +85,10 @@ Last-Update: Tue, 07 Jul 2020 01:42:04 +0000</td>
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<pre style="margin: 0;"> <span id="LC85" class="line" lang="plaintext"> ipig | 3 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC86" class="line" lang="plaintext"> libncl | 3 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC87" class="line" lang="plaintext"> librdp-taxonomy-tree-java | 3 | {bio-dev} | </span>
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<pre style="margin: 0;">-<span id="LC89" class="line" lang="plaintext"> maffilter | 3 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC88" class="line" lang="plaintext"> mauve-aligner | 3 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC89" class="line" lang="plaintext"> mhap | 3 | {bio-ngs,bio} | </span>
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<pre style="margin: 0;"> <span id="LC90" class="line" lang="plaintext"> microbegps | 3 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC91" class="line" lang="plaintext"> mrs | 3 | {bio} | </span>
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92
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<pre style="margin: 0;"> <span id="LC92" class="line" lang="plaintext"> multiqc | 3 | {bio,covid-19} | </span>
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93
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<pre style="margin: 0;"> <span id="LC93" class="line" lang="plaintext"> nutsqlite | 3 | {tools} | </span>
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94
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<pre style="margin: 0;"> <span id="LC94" class="line" lang="plaintext"> perm | 3 | {cloud,bio} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -100,7 +99,6 @@ Last-Update: Tue, 07 Jul 2020 01:42:04 +0000</td>
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99
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<pre style="margin: 0;"> <span id="LC99" class="line" lang="plaintext"> relion | 3 | {bio} | </span>
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100
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<pre style="margin: 0;"> <span id="LC100" class="line" lang="plaintext"> saint | 3 | {bio} | </span>
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101
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<pre style="margin: 0;"> <span id="LC101" class="line" lang="plaintext"> salmon | 3 | {bio,covid-19} | </span>
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<pre style="margin: 0;">-<span id="LC103" class="line" lang="plaintext"> segemehl | 3 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC102" class="line" lang="plaintext"> seqmagick | 3 | {covid-19,bio} | </span>
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<pre style="margin: 0;"> <span id="LC103" class="line" lang="plaintext"> seqsero | 3 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC104" class="line" lang="plaintext"> tnseq-transit | 3 | {covid-19,bio} | </span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="123" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -123,6 +121,7 @@ Last-Update: Tue, 07 Jul 2020 01:42:04 +0000</td>
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121
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<pre style="margin: 0;"> <span id="LC121" class="line" lang="plaintext"> daligner | 2 | {bio-ngs,bio} | </span>
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<pre style="margin: 0;"> <span id="LC122" class="line" lang="plaintext"> dascrubber | 2 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC123" class="line" lang="plaintext"> dazzdb | 2 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC124" class="line" lang="plaintext"> delly | 2 | {bio,covid-19} | </span>
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<pre style="margin: 0;"> <span id="LC125" class="line" lang="plaintext"> dindel | 2 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC126" class="line" lang="plaintext"> dwgsim | 2 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC127" class="line" lang="plaintext"> estscan | 2 | {bio} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -136,9 +135,8 @@ Last-Update: Tue, 07 Jul 2020 01:42:04 +0000</td>
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135
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<pre style="margin: 0;"> <span id="LC135" class="line" lang="plaintext"> libctapimkt | 2 | {practice} | </span>
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<pre style="margin: 0;"> <span id="LC136" class="line" lang="plaintext"> libpal-java | 2 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC137" class="line" lang="plaintext"> libsbml | 2 | {bio-dev} | </span>
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<pre style="margin: 0;">+<span id="LC138" class="line" lang="plaintext"> maffilter | 2 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC139" class="line" lang="plaintext"> metaphlan2 | 2 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC140" class="line" lang="plaintext"> mptp | 2 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC141" class="line" lang="plaintext"> mrs | 2 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC140" class="line" lang="plaintext"> murasaki | 2 | {bio} | </span>
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141
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<pre style="margin: 0;"> <span id="LC141" class="line" lang="plaintext"> ncbi-vdb | 2 | {bio-dev} | </span>
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142
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<pre style="margin: 0;"> <span id="LC142" class="line" lang="plaintext"> oscar | 2 | {practice,tools,data} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -160,6 +158,7 @@ Last-Update: Tue, 07 Jul 2020 01:42:04 +0000</td>
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158
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<pre style="margin: 0;"> <span id="LC158" class="line" lang="plaintext"> samblaster | 2 | {covid-19,bio} | </span>
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159
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<pre style="margin: 0;"> <span id="LC159" class="line" lang="plaintext"> samtools-legacy | 2 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC160" class="line" lang="plaintext"> scrm | 2 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC161" class="line" lang="plaintext"> segemehl | 2 | {bio} | </span>
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162
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<pre style="margin: 0;"> <span id="LC162" class="line" lang="plaintext"> seqan | 2 | {bio-dev} | </span>
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163
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<pre style="margin: 0;"> <span id="LC163" class="line" lang="plaintext"> sga | 2 | {bio} | </span>
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164
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<pre style="margin: 0;"> <span id="LC164" class="line" lang="plaintext"> sift | 2 | {bio} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -182,7 +181,7 @@ Last-Update: Tue, 07 Jul 2020 01:42:04 +0000</td>
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181
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<pre style="margin: 0;"> <span id="LC181" class="line" lang="plaintext"> libdisorder | 1 | {bio-dev} | </span>
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183
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182
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<pre style="margin: 0;"> <span id="LC182" class="line" lang="plaintext"> libvistaio | 1 | {imaging-dev} | </span>
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184
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183
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<pre style="margin: 0;"> <span id="LC183" class="line" lang="plaintext"> logol | 1 | {bio} | </span>
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185
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<pre style="margin: 0;">-<span id="LC185" class="line" lang="plaintext"> n<span class="idiff left right">anook | 1 | {bio,covid-19}</span> | </span>
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184
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<pre style="margin: 0;">+<span id="LC184" class="line" lang="plaintext"> n<span class="idiff left right">gs-sdk | 1 | {bio-dev} </span> | </span>
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186
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185
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<pre style="margin: 0;"> <span id="LC185" class="line" lang="plaintext"> opencfu | 1 | {laboratory} | </span>
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187
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186
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<pre style="margin: 0;"> <span id="LC186" class="line" lang="plaintext"> openslide | 1 | {imaging-dev} | </span>
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188
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187
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<pre style="margin: 0;"> <span id="LC187" class="line" lang="plaintext"> opensurgsim | 1 | {imaging-dev} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -248,7 +247,6 @@ Last-Update: Tue, 07 Jul 2020 01:42:04 +0000</td>
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248
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247
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<pre style="margin: 0;"> <span id="LC247" class="line" lang="plaintext"> mssstest | 0 | {tools} | </span>
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249
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248
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<pre style="margin: 0;"> <span id="LC248" class="line" lang="plaintext"> murasaki | 0 | {bio} | </span>
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250
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249
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<pre style="margin: 0;"> <span id="LC249" class="line" lang="plaintext"> nanosv | 0 | {bio,covid-19} | </span>
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251
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<pre style="margin: 0;">-<span id="LC251" class="line" lang="plaintext"> ngs-sdk | 0 | {bio-dev} | </span>
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250
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<pre style="margin: 0;"> <span id="LC250" class="line" lang="plaintext"> orthanc-imagej | 0 | {imaging} | </span>
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251
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<pre style="margin: 0;"> <span id="LC251" class="line" lang="plaintext"> papyrus | 0 | {imaging-dev} | </span>
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254
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<pre style="margin: 0;"> <span id="LC252" class="line" lang="plaintext"> parallel-fastq-dump | 0 | {covid-19} | </span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="256" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -256,8 +254,8 @@ Last-Update: Tue, 07 Jul 2020 01:42:04 +0000</td>
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256
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254
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<pre style="margin: 0;"> <span id="LC254" class="line" lang="plaintext"> pilercr | 0 | {bio} | </span>
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257
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255
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<pre style="margin: 0;"> <span id="LC255" class="line" lang="plaintext"> python-py2bit | 0 | {bio,bio-dev} | </span>
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258
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256
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<pre style="margin: 0;"> <span id="LC256" class="line" lang="plaintext"> quicktree | 0 | {bio,covid-19,bio-phylogeny} | </span>
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259
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<pre style="margin: 0;">-<span id="LC259" class="line" lang="plaintext"> relion | 0 | {bio} | </span>
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260
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257
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<pre style="margin: 0;"> <span id="LC257" class="line" lang="plaintext"> relion | 0 | {bio-dev} | </span>
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<pre style="margin: 0;">+<span id="LC258" class="line" lang="plaintext"> relion | 0 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC259" class="line" lang="plaintext"> sambamba | 0 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC260" class="line" lang="plaintext"> sbmltoolbox | 0 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC261" class="line" lang="plaintext"> seq-gen | 0 | {bio} | </span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="276" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -276,5 +274,5 @@ Last-Update: Tue, 07 Jul 2020 01:42:04 +0000</td>
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<pre style="margin: 0;"> <span id="LC274" class="line" lang="plaintext"> pycoqc | -1 | {covid-19,bio} | </span>
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<pre style="margin: 0;"> <span id="LC275" class="line" lang="plaintext"> shovill | -1 | {bio,covid-19} | </span>
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<pre style="margin: 0;"> <span id="LC276" class="line" lang="plaintext"> yanagiba | -1 | {bio,covid-19} | </span>
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<pre style="margin: 0;">-<span id="LC279" class="line" lang="plaintext">(30<span class="idiff left right">3</span> rows)</span>
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<pre style="margin: 0;">+<span id="LC277" class="line" lang="plaintext">(30<span class="idiff left right">1</span> rows)</span>
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<pre style="margin: 0;"> <span id="LC278" class="line" lang="plaintext"></span></pre>
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