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<h3>
Steffen Möller pushed to branch master
at <a href="https://salsa.debian.org/med-team/spades">Debian Med / spades</a>
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Commits:
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<strong><a href="https://salsa.debian.org/med-team/spades/-/commit/4172b726b5f77a72b44087aaaefd2a8951672a9f">4172b726</a></strong>
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<span>by Steffen Moeller</span>
<i>at 2020-06-24T13:26:03+02:00</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Extended description to help finding metaspades
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<h4>1 changed file:</h4>
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<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
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<h4>Changes:</h4>
<li id="58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
<a href="https://salsa.debian.org/med-team/spades/-/commit/4172b726b5f77a72b44087aaaefd2a8951672a9f#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2"><strong>debian/control</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -51,3 +51,19 @@ Description: genome assembler for single-cell and isolates data sets</td>
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<pre style="margin: 0;"> <span id="LC51" class="line" lang="plaintext"> with Illumina or IonTorrent reads and is capable of providing hybrid</span>
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<pre style="margin: 0;"> <span id="LC52" class="line" lang="plaintext"> assemblies using PacBio and Sanger reads. You can also provide</span>
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<pre style="margin: 0;"> <span id="LC53" class="line" lang="plaintext"> additional contigs that will be used as long reads.</span>
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<pre style="margin: 0;">+<span id="LC54" class="line" lang="plaintext"> .</span>
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<pre style="margin: 0;">+<span id="LC55" class="line" lang="plaintext"> This package provides the following additional pipelines:</span>
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<pre style="margin: 0;">+<span id="LC56" class="line" lang="plaintext"> * metaSPAdes – a pipeline for metagenomic data sets</span>
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<pre style="margin: 0;">+<span id="LC57" class="line" lang="plaintext"> * plasmidSPAdes – a pipeline for extracting and assembling plasmids</span>
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<pre style="margin: 0;">+<span id="LC58" class="line" lang="plaintext"> from WGS data sets</span>
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<pre style="margin: 0;">+<span id="LC59" class="line" lang="plaintext"> * metaplasmidSPAdes – a pipeline for extracting and assembling</span>
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<pre style="margin: 0;">+<span id="LC60" class="line" lang="plaintext"> plasmids from metagenomic data sets</span>
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<pre style="margin: 0;">+<span id="LC61" class="line" lang="plaintext"> * rnaSPAdes – a de novo transcriptome assembler from RNA-Seq data</span>
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<pre style="margin: 0;">+<span id="LC62" class="line" lang="plaintext"> * truSPAdes – a module for TruSeq barcode assembly</span>
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<pre style="margin: 0;">+<span id="LC63" class="line" lang="plaintext"> * biosyntheticSPAdes – a module for biosynthetic gene cluster</span>
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<pre style="margin: 0;">+<span id="LC64" class="line" lang="plaintext"> assembly with paired-end reads</span>
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<pre style="margin: 0;">+<span id="LC65" class="line" lang="plaintext"> .</span>
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<pre style="margin: 0;">+<span id="LC66" class="line" lang="plaintext"> SPAdes provides several stand-alone binaries with relatively simple</span>
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<pre style="margin: 0;">+<span id="LC67" class="line" lang="plaintext"> command-line interface: k-mer counting (spades-kmercounter), assembly</span>
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<pre style="margin: 0;">+<span id="LC68" class="line" lang="plaintext"> graph construction (spades-gbuilder) and long read to graph aligner</span>
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<pre style="margin: 0;">+<span id="LC69" class="line" lang="plaintext"> (spades-gmapper).</span></pre>
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